Clone BO08612 Report

Search the DGRC for BO08612

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:86
Well:12
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO08612.pep: validated not full length
Sequenced Size:1156

Clone Sequence Records

BO08612.3prime Sequence

920 bp (905 high quality bases) assembled on 2006-01-09

> BO08612.3prime
ATGGTCTAGAAAGCTTGCGCTCATTTTCACGCGTTTCCTTGGTGGTCCAA
TTGGTGGGATTTGTTGTGTTGCGAGCGCACGAAATGCCTCCGCTATCAAA
TGTGAATGTGTTGTGATCATATTTTGCCAGCCGGAGGTTTCCATCACATC
GGTGGCATGAGTATTTATGAAATCTATCGTTTGTGCTTTCAATTGATCCG
CACTGTGGAGATCAGCTAATATTAGGGTTTCGGCTGCTGTTTCTACAGAG
AGATTGACGCACAGCGCCTCCTCGCACATCACTTTCAGCTTTTCGAGTGC
ATACTTATCAGCAGCCGCTAGGAGATCATCAGCCATTTTTTCTAGATTGG
GCGCCTTGCCCGTGTATATGAATCGCAGCATTTCTTTAAGAACCTCATGA
TCCACATCGGTTATGGCGACACGATTCAACTTTCGCTCCTCCATCTCATG
CTCGAACATGGCCGCAAAGACATCGCTGCGCGCTGCCAATATGGCCTTGT
GCGCCTGGAACTCTCGACCGCCCACGGAGAGCGTGACGTCGCTGAACTTC
TCGTTGTCAAATAGATTGCCAAGATCCTCGGACAGCTTGCATTCGGGCAC
TTTGAACTGCACGATATTGGATTGTCCGGAGATGTTCACGCTGTCCGCCA
CGACGCTGACCTCGCAGAAGATGGTCAGCTTATCCTCCGGCAGCAGGCCG
TTGGCCTCGTCCAGCAGGAAGTCTCGTCGGATGAACTTCTTGAAGCCCCA
ATCTTTGCCCTGCACAAAACGATAAGCTCTTTGGGATTCCATTGCTTTGG
TTTCCTCACGCTTCGCATTCAGTATGGAAAATTTGAACTTGGCTCTGACT
TCTGATTTATTACACGAAACTAACAGTAAATATAAAGAAAGGTAATCCTT
GCTCTCCTCGTCGAGACCCT

BO08612.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG9924-PC 1212 CG9924-RC 308..1209 920..19 4510 100 Minus
CG9924-PE 2490 CG9924-RE 1586..2487 920..19 4510 100 Minus
CG9924-PA 1221 CG9924-RA 317..1218 920..19 4510 100 Minus
CG9924-PB 1125 CG9924-RB 221..1122 920..19 4510 100 Minus
CG9924-PD 1212 CG9924-RD 308..1209 920..19 4510 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:19:30
Subject Length Description Subject Range Query Range Score Percent Strand
rdx-RF 3856 CG12537-RF 827..1728 920..19 4510 100 Minus
rdx-RE 4159 CG12537-RE 2024..2925 920..19 4510 100 Minus
rdx-RB 2311 CG12537-RB 846..1747 920..19 4510 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:19:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13969909..13970206 483..780 1490 100 Plus
3R 32079331 3R 13969608..13969790 304..486 915 100 Plus
3R 32079331 3R 13969397..13969541 161..305 725 100 Plus
3R 32079331 3R 13969189..13969330 19..160 710 100 Plus
3R 32079331 3R 13970278..13970419 779..920 710 100 Plus
Blast to na_te.dros performed 2015-02-10 23:19:26
Subject Length Description Subject Range Query Range Score Percent Strand
invader1 4032 invader1 INVADER 4032bp 2149..2196 146..99 132 75 Minus

BO08612.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:41 Download gff for BO08612.3prime
Subject Subject Range Query Range Percent Splice Strand
FBpp0099767 1586..2490 16..920 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:48:13 Download gff for BO08612.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9924-PD 308..1212 16..920 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:03:40 Download gff for BO08612.3prime
Subject Subject Range Query Range Percent Splice Strand
rdx-RB 846..1751 15..920 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:34:01 Download gff for BO08612.3prime
Subject Subject Range Query Range Percent Splice Strand
rdx-RB 846..1751 15..920 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:34:01 Download gff for BO08612.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13970278..13970419 779..920 100   Plus
3R 13969184..13969330 15..160 98 <- Plus
3R 13969397..13969539 161..303 100 <- Plus
3R 13969608..13969786 304..482 100 <- Plus
3R 13969909..13970204 483..778 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:03:40 Download gff for BO08612.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9794906..9795052 15..160 98 <- Plus
arm_3R 9795119..9795261 161..303 100 <- Plus
arm_3R 9795330..9795508 304..482 100 <- Plus
arm_3R 9795631..9795926 483..778 100 <- Plus
arm_3R 9796000..9796141 779..920 100   Plus

BO08612.5prime Sequence

909 bp (742 high quality bases) assembled on 2006-01-09

> BO08612.5prime
GAAGTTATCAGTCGACATGGCGGTCAGCCGTGTACCATCGCCGCCCTTGC
CGGAAGTTAATACGCCAGTTGCCGAGAACTGGTGCTACACGCAGGTCAAA
GTGGTTAAATTTAGTTATATGTGGACCATAAATAACTTTAGTTTTTGTCG
GGAAGAAATGGGTGAGGTACTCAAATCGTCCACATTCTCAGCCGGTGCTA
ATGACAAACTAAAATGGTGTTTACGGGTTAACCCCAAGGGTCTCGACGAG
GAGAGCAAGGATTACCTTTCTTTATATTTACTGTTAGTTTCGTGTAATAA
ATCAGAAGTCAGAGCCAAGTTCAAATTTTCCATACTGAATGCGAAGCGTG
AGGAAACCAAAGCAATGGAATCCCAAAGAGCTTATCGTTTTGTGCAGGGC
AAAGATTGGGGCTTCAAGAAGTTCATCCGACGAGACTTCCTGCTGGACGA
GGCCAACGGCCTGCTGCCGGAGGATAAGCTGACCATCTTCTGCGAGGTCA
GCGTCGTGGCGGACAGCGTGAACATCTCCGGACAATCCAATATCGTGCAG
TTCAAAGTGCCCGAATGCAAGCTGTCCGAGGATCTTGGCAATCTATTTGA
CAACGAGAAGTTCAGCGACGTCACGCTCTCCGTGGGCGGTCGAGAGTTCC
AGGCGCACAAGGCCATATTGGCAGCGCGCAGCGATGTCTTTGCGGCCATG
TTCGAGCATGAGATGGAGGAGCGAAAGTTGAATCGTGTCGCCATAACCGA
TGTGGATCATGAGGTTCTTAAAGAAATGCTGCGATTCATATACACGGGCA
AGGCGCCCAATCTAGAAAAAATGGCTGATGATCTCCTAGCGGCTGCTGAT
AAGTATGCACTCGAAAAGCTGAAAGTGATGTGCGAGGAGGCGCTGTGCGT
CAATCTCTC

BO08612.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG9924-PC 1212 CG9924-RC 88..980 17..909 4465 100 Plus
CG9924-PE 2490 CG9924-RE 1366..2258 17..909 4465 100 Plus
CG9924-PA 1221 CG9924-RA 97..989 17..909 4465 100 Plus
CG9924-PB 1125 CG9924-RB 1..893 17..909 4465 100 Plus
CG9924-PD 1212 CG9924-RD 88..980 17..909 4465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:55:07
Subject Length Description Subject Range Query Range Score Percent Strand
rdx-RF 3856 CG12537-RF 607..1499 17..909 4465 100 Plus
rdx-RE 4159 CG12537-RE 1804..2696 17..909 4465 100 Plus
rdx-RB 2311 CG12537-RB 626..1518 17..909 4465 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13969909..13970206 674..377 1490 100 Minus
3R 32079331 3R 13969608..13969790 853..671 915 100 Minus
3R 32079331 3R 13970278..13970440 378..216 815 100 Minus
3R 32079331 3R 13970505..13970634 219..90 650 100 Minus
3R 32079331 3R 13970950..13971029 96..17 400 100 Minus
3R 32079331 3R 13969484..13969541 909..852 290 100 Minus
Blast to na_te.dros performed on 2015-02-13 02:55:06 has no hits.

BO08612.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:42 Download gff for BO08612.5prime
Subject Subject Range Query Range Percent Splice Strand
FBpp0099767 1356..2258 9..909 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:48:15 Download gff for BO08612.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9924-PD 78..980 9..909 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:20:05 Download gff for BO08612.5prime
Subject Subject Range Query Range Percent Splice Strand
rdx-RB 616..1518 9..909 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:25:47 Download gff for BO08612.5prime
Subject Subject Range Query Range Percent Splice Strand
rdx-RB 616..1518 9..909 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:25:47 Download gff for BO08612.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13970278..13970439 217..378 100 <- Minus
3R 13970508..13970629 95..216 100 <- Minus
3R 13970952..13971039 9..94 96   Minus
3R 13969484..13969539 854..909 100 <- Minus
3R 13969608..13969786 675..853 100 <- Minus
3R 13969909..13970204 379..674 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:20:05 Download gff for BO08612.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9795206..9795261 854..909 100 <- Minus
arm_3R 9795330..9795508 675..853 100 <- Minus
arm_3R 9795631..9795926 379..674 100 <- Minus
arm_3R 9796000..9796161 217..378 100 <- Minus
arm_3R 9796230..9796351 95..216 100 <- Minus
arm_3R 9796674..9796761 9..94 96   Minus

BO08612.complete Sequence

1156 bp (1156 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ631256

> BO08612.complete
GAAGTTATCAGTCGACATGGCGGTCAGCCGTGTACCATCGCCGCCCTTGC
CGGAAGTTAATACGCCAGTTGCCGAGAACTGGTGCTACACGCAGGTCAAA
GTGGTTAAATTTAGTTATATGTGGACCATAAATAACTTTAGTTTTTGTCG
GGAAGAAATGGGTGAGGTACTCAAATCGTCCACATTCTCAGCCGGTGCTA
ATGACAAACTAAAATGGTGTTTACGGGTTAACCCCAAGGGTCTCGACGAG
GAGAGCAAGGATTACCTTTCTTTATATTTACTGTTAGTTTCGTGTAATAA
ATCAGAAGTCAGAGCCAAGTTCAAATTTTCCATACTGAATGCGAAGCGTG
AGGAAACCAAAGCAATGGAATCCCAAAGAGCTTATCGTTTTGTGCAGGGC
AAAGATTGGGGCTTCAAGAAGTTCATCCGACGAGACTTCCTGCTGGACGA
GGCCAACGGCCTGCTGCCGGAGGATAAGCTGACCATCTTCTGCGAGGTCA
GCGTCGTGGCGGACAGCGTGAACATCTCCGGACAATCCAATATCGTGCAG
TTCAAAGTGCCCGAATGCAAGCTGTCCGAGGATCTTGGCAATCTATTTGA
CAACGAGAAGTTCAGCGACGTCACGCTCTCCGTGGGCGGTCGAGAGTTCC
AGGCGCACAAGGCCATATTGGCAGCGCGCAGCGATGTCTTTGCGGCCATG
TTCGAGCATGAGATGGAGGAGCGAAAGTTGAATCGTGTCGCCATAACCGA
TGTGGATCATGAGGTTCTTAAAGAAATGCTGCGATTCATATACACGGGCA
AGGCGCCCAATCTAGAAAAAATGGCTGATGATCTCCTAGCGGCTGCTGAT
AAGTATGCACTCGAAAAGCTGAAAGTGATGTGCGAGGAGGCGCTGTGCGT
CAATCTCTCTGTAGAAACAGCAGCCGAAACCCTAATATTAGCTGATCTCC
ACAGTGCGGATCAATTGAAAGCACAAACGATAGATTTCATAAATACTCAT
GCCACCGATGTGATGGAAACCTCCGGCTGGCAAAATATGATCACAACACA
TTCACATTTGATAGCGGAGGCATTTCGTGCGCTCGCAACACAACAAATCC
CACCAATTGGACCACCAAGGAAACGCGTGAAAATGAGCGCAAGCTTTCTA
GACCAT

BO08612.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:37:37
Subject Length Description Subject Range Query Range Score Percent Strand
rdx-RF 1221 CG12537-PF 97..1218 17..1138 5610 100 Plus
rdx-RE 2490 CG12537-PE 1366..2487 17..1138 5610 100 Plus
rdx-RB 1125 CG12537-PB 1..1122 17..1138 5610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:37:38
Subject Length Description Subject Range Query Range Score Percent Strand
rdx-RF 3856 CG12537-RF 607..1728 17..1138 5610 100 Plus
rdx-RE 4159 CG12537-RE 1804..2925 17..1138 5610 100 Plus
rdx-RB 2311 CG12537-RB 626..1747 17..1138 5610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:37:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13969909..13970206 674..377 1490 100 Minus
3R 32079331 3R 13969608..13969790 853..671 915 100 Minus
3R 32079331 3R 13970278..13970440 378..216 815 100 Minus
3R 32079331 3R 13969397..13969541 996..852 725 100 Minus
3R 32079331 3R 13969189..13969330 1138..997 710 100 Minus
3R 32079331 3R 13970505..13970634 219..90 650 100 Minus
3R 32079331 3R 13970950..13971029 96..17 400 100 Minus
Blast to na_te.dros performed 2014-11-26 21:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
invader1 4032 invader1 INVADER 4032bp 2149..2196 1011..1058 132 75 Plus

BO08612.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:00 Download gff for BO08612.complete
Subject Subject Range Query Range Percent Splice Strand
rdx-RA 87..1221 9..1141 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:30:16 Download gff for BO08612.complete
Subject Subject Range Query Range Percent Splice Strand
rdx-RA 595..1730 9..1142 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:31:52 Download gff for BO08612.complete
Subject Subject Range Query Range Percent Splice Strand
rdx-RB 626..1747 17..1140 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:00 Download gff for BO08612.complete
Subject Subject Range Query Range Percent Splice Strand
rdx-RA 595..1730 9..1142 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:38:09 Download gff for BO08612.complete
Subject Subject Range Query Range Percent Splice Strand
rdx-RB 626..1747 17..1140 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:38:09 Download gff for BO08612.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13969608..13969786 675..853 100 <- Minus
3R 13969186..13969330 997..1140 98 <- Minus
3R 13969397..13969539 854..996 100 <- Minus
3R 13969909..13970204 379..674 100 <- Minus
3R 13970278..13970439 217..378 100 <- Minus
3R 13970508..13970629 95..216 100 <- Minus
3R 13970952..13971029 17..94 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:31:52 Download gff for BO08612.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9794908..9795052 997..1140 98 <- Minus
arm_3R 9795119..9795261 854..996 100 <- Minus
arm_3R 9795330..9795508 675..853 100 <- Minus
arm_3R 9795631..9795926 379..674 100 <- Minus
arm_3R 9796000..9796161 217..378 100 <- Minus
arm_3R 9796230..9796351 95..216 100 <- Minus
arm_3R 9796674..9796751 17..94 100   Minus

BO08612.pep Sequence

Translation from 16 to 1156

> BO08612.pep
MAVSRVPSPPLPEVNTPVAENWCYTQVKVVKFSYMWTINNFSFCREEMGE
VLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCNKSEVRA
KFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLL
PEDKLTIFCEVSVVADSVNISGQSNIVQFKVPECKLSEDLGNLFDNEKFS
DVTLSVGGREFQAHKAILAARSDVFAAMFEHEMEERKLNRVAITDVDHEV
LKEMLRFIYTGKAPNLEKMADDLLAAADKYALEKLKVMCEEALCVNLSVE
TAAETLILADLHSADQLKAQTIDFINTHATDVMETSGWQNMITTHSHLIA
EAFRALATQQIPPIGPPRKRVKMSASFLDH

BO08612.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:45:00
Subject Length Description Subject Range Query Range Score Percent Strand
rdx-PB 374 CG12537-PB 1..374 1..374 1923 100 Plus
rdx-PC 403 CG12537-PC 30..403 1..374 1923 100 Plus
rdx-PF 406 CG12537-PF 33..406 1..374 1923 100 Plus
rdx-PA 406 CG12537-PA 33..406 1..374 1923 100 Plus
rdx-PE 829 CG12537-PE 456..829 1..374 1923 100 Plus