Clone Sequence Records
BO08612.3prime Sequence
920 bp (905 high quality bases) assembled on 2006-01-09
> BO08612.3prime
ATGGTCTAGAAAGCTTGCGCTCATTTTCACGCGTTTCCTTGGTGGTCCAA
TTGGTGGGATTTGTTGTGTTGCGAGCGCACGAAATGCCTCCGCTATCAAA
TGTGAATGTGTTGTGATCATATTTTGCCAGCCGGAGGTTTCCATCACATC
GGTGGCATGAGTATTTATGAAATCTATCGTTTGTGCTTTCAATTGATCCG
CACTGTGGAGATCAGCTAATATTAGGGTTTCGGCTGCTGTTTCTACAGAG
AGATTGACGCACAGCGCCTCCTCGCACATCACTTTCAGCTTTTCGAGTGC
ATACTTATCAGCAGCCGCTAGGAGATCATCAGCCATTTTTTCTAGATTGG
GCGCCTTGCCCGTGTATATGAATCGCAGCATTTCTTTAAGAACCTCATGA
TCCACATCGGTTATGGCGACACGATTCAACTTTCGCTCCTCCATCTCATG
CTCGAACATGGCCGCAAAGACATCGCTGCGCGCTGCCAATATGGCCTTGT
GCGCCTGGAACTCTCGACCGCCCACGGAGAGCGTGACGTCGCTGAACTTC
TCGTTGTCAAATAGATTGCCAAGATCCTCGGACAGCTTGCATTCGGGCAC
TTTGAACTGCACGATATTGGATTGTCCGGAGATGTTCACGCTGTCCGCCA
CGACGCTGACCTCGCAGAAGATGGTCAGCTTATCCTCCGGCAGCAGGCCG
TTGGCCTCGTCCAGCAGGAAGTCTCGTCGGATGAACTTCTTGAAGCCCCA
ATCTTTGCCCTGCACAAAACGATAAGCTCTTTGGGATTCCATTGCTTTGG
TTTCCTCACGCTTCGCATTCAGTATGGAAAATTTGAACTTGGCTCTGACT
TCTGATTTATTACACGAAACTAACAGTAAATATAAAGAAAGGTAATCCTT
GCTCTCCTCGTCGAGACCCT
BO08612.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9924-PC | 1212 | CG9924-RC | 308..1209 | 920..19 | 4510 | 100 | Minus |
CG9924-PE | 2490 | CG9924-RE | 1586..2487 | 920..19 | 4510 | 100 | Minus |
CG9924-PA | 1221 | CG9924-RA | 317..1218 | 920..19 | 4510 | 100 | Minus |
CG9924-PB | 1125 | CG9924-RB | 221..1122 | 920..19 | 4510 | 100 | Minus |
CG9924-PD | 1212 | CG9924-RD | 308..1209 | 920..19 | 4510 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:19:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdx-RF | 3856 | CG12537-RF | 827..1728 | 920..19 | 4510 | 100 | Minus |
rdx-RE | 4159 | CG12537-RE | 2024..2925 | 920..19 | 4510 | 100 | Minus |
rdx-RB | 2311 | CG12537-RB | 846..1747 | 920..19 | 4510 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:19:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13969909..13970206 | 483..780 | 1490 | 100 | Plus |
3R | 32079331 | 3R | 13969608..13969790 | 304..486 | 915 | 100 | Plus |
3R | 32079331 | 3R | 13969397..13969541 | 161..305 | 725 | 100 | Plus |
3R | 32079331 | 3R | 13969189..13969330 | 19..160 | 710 | 100 | Plus |
3R | 32079331 | 3R | 13970278..13970419 | 779..920 | 710 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 23:19:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader1 | 4032 | invader1 INVADER 4032bp | 2149..2196 | 146..99 | 132 | 75 | Minus |
BO08612.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:41 Download gff for
BO08612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FBpp0099767 | 1586..2490 | 16..920 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:48:13 Download gff for
BO08612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9924-PD | 308..1212 | 16..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:03:40 Download gff for
BO08612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdx-RB | 846..1751 | 15..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:34:01 Download gff for
BO08612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdx-RB | 846..1751 | 15..920 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:34:01 Download gff for
BO08612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13970278..13970419 | 779..920 | 100 | | Plus |
3R | 13969184..13969330 | 15..160 | 98 | <- | Plus |
3R | 13969397..13969539 | 161..303 | 100 | <- | Plus |
3R | 13969608..13969786 | 304..482 | 100 | <- | Plus |
3R | 13969909..13970204 | 483..778 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:03:40 Download gff for
BO08612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9794906..9795052 | 15..160 | 98 | <- | Plus |
arm_3R | 9795119..9795261 | 161..303 | 100 | <- | Plus |
arm_3R | 9795330..9795508 | 304..482 | 100 | <- | Plus |
arm_3R | 9795631..9795926 | 483..778 | 100 | <- | Plus |
arm_3R | 9796000..9796141 | 779..920 | 100 | | Plus |
BO08612.5prime Sequence
909 bp (742 high quality bases) assembled on 2006-01-09
> BO08612.5prime
GAAGTTATCAGTCGACATGGCGGTCAGCCGTGTACCATCGCCGCCCTTGC
CGGAAGTTAATACGCCAGTTGCCGAGAACTGGTGCTACACGCAGGTCAAA
GTGGTTAAATTTAGTTATATGTGGACCATAAATAACTTTAGTTTTTGTCG
GGAAGAAATGGGTGAGGTACTCAAATCGTCCACATTCTCAGCCGGTGCTA
ATGACAAACTAAAATGGTGTTTACGGGTTAACCCCAAGGGTCTCGACGAG
GAGAGCAAGGATTACCTTTCTTTATATTTACTGTTAGTTTCGTGTAATAA
ATCAGAAGTCAGAGCCAAGTTCAAATTTTCCATACTGAATGCGAAGCGTG
AGGAAACCAAAGCAATGGAATCCCAAAGAGCTTATCGTTTTGTGCAGGGC
AAAGATTGGGGCTTCAAGAAGTTCATCCGACGAGACTTCCTGCTGGACGA
GGCCAACGGCCTGCTGCCGGAGGATAAGCTGACCATCTTCTGCGAGGTCA
GCGTCGTGGCGGACAGCGTGAACATCTCCGGACAATCCAATATCGTGCAG
TTCAAAGTGCCCGAATGCAAGCTGTCCGAGGATCTTGGCAATCTATTTGA
CAACGAGAAGTTCAGCGACGTCACGCTCTCCGTGGGCGGTCGAGAGTTCC
AGGCGCACAAGGCCATATTGGCAGCGCGCAGCGATGTCTTTGCGGCCATG
TTCGAGCATGAGATGGAGGAGCGAAAGTTGAATCGTGTCGCCATAACCGA
TGTGGATCATGAGGTTCTTAAAGAAATGCTGCGATTCATATACACGGGCA
AGGCGCCCAATCTAGAAAAAATGGCTGATGATCTCCTAGCGGCTGCTGAT
AAGTATGCACTCGAAAAGCTGAAAGTGATGTGCGAGGAGGCGCTGTGCGT
CAATCTCTC
BO08612.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9924-PC | 1212 | CG9924-RC | 88..980 | 17..909 | 4465 | 100 | Plus |
CG9924-PE | 2490 | CG9924-RE | 1366..2258 | 17..909 | 4465 | 100 | Plus |
CG9924-PA | 1221 | CG9924-RA | 97..989 | 17..909 | 4465 | 100 | Plus |
CG9924-PB | 1125 | CG9924-RB | 1..893 | 17..909 | 4465 | 100 | Plus |
CG9924-PD | 1212 | CG9924-RD | 88..980 | 17..909 | 4465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:55:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdx-RF | 3856 | CG12537-RF | 607..1499 | 17..909 | 4465 | 100 | Plus |
rdx-RE | 4159 | CG12537-RE | 1804..2696 | 17..909 | 4465 | 100 | Plus |
rdx-RB | 2311 | CG12537-RB | 626..1518 | 17..909 | 4465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:55:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13969909..13970206 | 674..377 | 1490 | 100 | Minus |
3R | 32079331 | 3R | 13969608..13969790 | 853..671 | 915 | 100 | Minus |
3R | 32079331 | 3R | 13970278..13970440 | 378..216 | 815 | 100 | Minus |
3R | 32079331 | 3R | 13970505..13970634 | 219..90 | 650 | 100 | Minus |
3R | 32079331 | 3R | 13970950..13971029 | 96..17 | 400 | 100 | Minus |
3R | 32079331 | 3R | 13969484..13969541 | 909..852 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:55:06 has no hits.
BO08612.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:42 Download gff for
BO08612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FBpp0099767 | 1356..2258 | 9..909 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:48:15 Download gff for
BO08612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9924-PD | 78..980 | 9..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:20:05 Download gff for
BO08612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdx-RB | 616..1518 | 9..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:25:47 Download gff for
BO08612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdx-RB | 616..1518 | 9..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:25:47 Download gff for
BO08612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13970278..13970439 | 217..378 | 100 | <- | Minus |
3R | 13970508..13970629 | 95..216 | 100 | <- | Minus |
3R | 13970952..13971039 | 9..94 | 96 | | Minus |
3R | 13969484..13969539 | 854..909 | 100 | <- | Minus |
3R | 13969608..13969786 | 675..853 | 100 | <- | Minus |
3R | 13969909..13970204 | 379..674 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:20:05 Download gff for
BO08612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9795206..9795261 | 854..909 | 100 | <- | Minus |
arm_3R | 9795330..9795508 | 675..853 | 100 | <- | Minus |
arm_3R | 9795631..9795926 | 379..674 | 100 | <- | Minus |
arm_3R | 9796000..9796161 | 217..378 | 100 | <- | Minus |
arm_3R | 9796230..9796351 | 95..216 | 100 | <- | Minus |
arm_3R | 9796674..9796761 | 9..94 | 96 | | Minus |
BO08612.complete Sequence
1156 bp (1156 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631256
> BO08612.complete
GAAGTTATCAGTCGACATGGCGGTCAGCCGTGTACCATCGCCGCCCTTGC
CGGAAGTTAATACGCCAGTTGCCGAGAACTGGTGCTACACGCAGGTCAAA
GTGGTTAAATTTAGTTATATGTGGACCATAAATAACTTTAGTTTTTGTCG
GGAAGAAATGGGTGAGGTACTCAAATCGTCCACATTCTCAGCCGGTGCTA
ATGACAAACTAAAATGGTGTTTACGGGTTAACCCCAAGGGTCTCGACGAG
GAGAGCAAGGATTACCTTTCTTTATATTTACTGTTAGTTTCGTGTAATAA
ATCAGAAGTCAGAGCCAAGTTCAAATTTTCCATACTGAATGCGAAGCGTG
AGGAAACCAAAGCAATGGAATCCCAAAGAGCTTATCGTTTTGTGCAGGGC
AAAGATTGGGGCTTCAAGAAGTTCATCCGACGAGACTTCCTGCTGGACGA
GGCCAACGGCCTGCTGCCGGAGGATAAGCTGACCATCTTCTGCGAGGTCA
GCGTCGTGGCGGACAGCGTGAACATCTCCGGACAATCCAATATCGTGCAG
TTCAAAGTGCCCGAATGCAAGCTGTCCGAGGATCTTGGCAATCTATTTGA
CAACGAGAAGTTCAGCGACGTCACGCTCTCCGTGGGCGGTCGAGAGTTCC
AGGCGCACAAGGCCATATTGGCAGCGCGCAGCGATGTCTTTGCGGCCATG
TTCGAGCATGAGATGGAGGAGCGAAAGTTGAATCGTGTCGCCATAACCGA
TGTGGATCATGAGGTTCTTAAAGAAATGCTGCGATTCATATACACGGGCA
AGGCGCCCAATCTAGAAAAAATGGCTGATGATCTCCTAGCGGCTGCTGAT
AAGTATGCACTCGAAAAGCTGAAAGTGATGTGCGAGGAGGCGCTGTGCGT
CAATCTCTCTGTAGAAACAGCAGCCGAAACCCTAATATTAGCTGATCTCC
ACAGTGCGGATCAATTGAAAGCACAAACGATAGATTTCATAAATACTCAT
GCCACCGATGTGATGGAAACCTCCGGCTGGCAAAATATGATCACAACACA
TTCACATTTGATAGCGGAGGCATTTCGTGCGCTCGCAACACAACAAATCC
CACCAATTGGACCACCAAGGAAACGCGTGAAAATGAGCGCAAGCTTTCTA
GACCAT
BO08612.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:37:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdx-RF | 1221 | CG12537-PF | 97..1218 | 17..1138 | 5610 | 100 | Plus |
rdx-RE | 2490 | CG12537-PE | 1366..2487 | 17..1138 | 5610 | 100 | Plus |
rdx-RB | 1125 | CG12537-PB | 1..1122 | 17..1138 | 5610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:37:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdx-RF | 3856 | CG12537-RF | 607..1728 | 17..1138 | 5610 | 100 | Plus |
rdx-RE | 4159 | CG12537-RE | 1804..2925 | 17..1138 | 5610 | 100 | Plus |
rdx-RB | 2311 | CG12537-RB | 626..1747 | 17..1138 | 5610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:37:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13969909..13970206 | 674..377 | 1490 | 100 | Minus |
3R | 32079331 | 3R | 13969608..13969790 | 853..671 | 915 | 100 | Minus |
3R | 32079331 | 3R | 13970278..13970440 | 378..216 | 815 | 100 | Minus |
3R | 32079331 | 3R | 13969397..13969541 | 996..852 | 725 | 100 | Minus |
3R | 32079331 | 3R | 13969189..13969330 | 1138..997 | 710 | 100 | Minus |
3R | 32079331 | 3R | 13970505..13970634 | 219..90 | 650 | 100 | Minus |
3R | 32079331 | 3R | 13970950..13971029 | 96..17 | 400 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 21:37:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader1 | 4032 | invader1 INVADER 4032bp | 2149..2196 | 1011..1058 | 132 | 75 | Plus |
BO08612.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:00 Download gff for
BO08612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdx-RA | 87..1221 | 9..1141 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:30:16 Download gff for
BO08612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdx-RA | 595..1730 | 9..1142 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:31:52 Download gff for
BO08612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdx-RB | 626..1747 | 17..1140 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:00 Download gff for
BO08612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdx-RA | 595..1730 | 9..1142 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:38:09 Download gff for
BO08612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdx-RB | 626..1747 | 17..1140 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:38:09 Download gff for
BO08612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13969608..13969786 | 675..853 | 100 | <- | Minus |
3R | 13969186..13969330 | 997..1140 | 98 | <- | Minus |
3R | 13969397..13969539 | 854..996 | 100 | <- | Minus |
3R | 13969909..13970204 | 379..674 | 100 | <- | Minus |
3R | 13970278..13970439 | 217..378 | 100 | <- | Minus |
3R | 13970508..13970629 | 95..216 | 100 | <- | Minus |
3R | 13970952..13971029 | 17..94 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:31:52 Download gff for
BO08612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9794908..9795052 | 997..1140 | 98 | <- | Minus |
arm_3R | 9795119..9795261 | 854..996 | 100 | <- | Minus |
arm_3R | 9795330..9795508 | 675..853 | 100 | <- | Minus |
arm_3R | 9795631..9795926 | 379..674 | 100 | <- | Minus |
arm_3R | 9796000..9796161 | 217..378 | 100 | <- | Minus |
arm_3R | 9796230..9796351 | 95..216 | 100 | <- | Minus |
arm_3R | 9796674..9796751 | 17..94 | 100 | | Minus |
BO08612.pep Sequence
Translation from 16 to 1156
> BO08612.pep
MAVSRVPSPPLPEVNTPVAENWCYTQVKVVKFSYMWTINNFSFCREEMGE
VLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCNKSEVRA
KFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLL
PEDKLTIFCEVSVVADSVNISGQSNIVQFKVPECKLSEDLGNLFDNEKFS
DVTLSVGGREFQAHKAILAARSDVFAAMFEHEMEERKLNRVAITDVDHEV
LKEMLRFIYTGKAPNLEKMADDLLAAADKYALEKLKVMCEEALCVNLSVE
TAAETLILADLHSADQLKAQTIDFINTHATDVMETSGWQNMITTHSHLIA
EAFRALATQQIPPIGPPRKRVKMSASFLDH
BO08612.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:45:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdx-PB | 374 | CG12537-PB | 1..374 | 1..374 | 1923 | 100 | Plus |
rdx-PC | 403 | CG12537-PC | 30..403 | 1..374 | 1923 | 100 | Plus |
rdx-PF | 406 | CG12537-PF | 33..406 | 1..374 | 1923 | 100 | Plus |
rdx-PA | 406 | CG12537-PA | 33..406 | 1..374 | 1923 | 100 | Plus |
rdx-PE | 829 | CG12537-PE | 456..829 | 1..374 | 1923 | 100 | Plus |