Clone Sequence Records
BO08616.3prime Sequence
861 bp (752 high quality bases) assembled on 2006-01-09
> BO08616.3prime
ATGGTCTAGAAAGCTTGCCTGATCTAAGTGTCCACCTTGGACCGCCGCCG
CCGCAGCCGCTGCCGCCGCCGCCTTCTGGGCCTGCGCCTGCTTCTCCTGT
TCGTTCAGCTCCTTGATCGCCTGGATCTCCTTCTTCAGCTTCATTCGCCG
GTTCTGGAACCAGATCTTGATCTGCCGCTCCGTCAGGCATAGCGCGTGCG
CCATCTCGATTCTCCGTCTGCGGGTCAGATAATGATTCGTGTGGAACTCC
TTCTCCAGCTCGAGCGTCTGGTAGCGGGTGTATGTCTGTCGGCCGCGTCT
TCGCAGACCATTTGTACCTAGCCAGTCTGGTAGAAGTGAGCCCGCAAGAG
ATTCTGAGTATCTCTTACCCATGTCTGTTGATATGCCGCCGTATTGTGTT
AAATCAGATCTTATCTTACCTGCGATAGCCATCCAGGGGTAGAATGTGTG
ATTGCTGGCCTGGTGTAAACTGCTGGCGGCCGCCGTTTGGGCAGCGGCGC
CCGAGATGGTGCAATTGGCATTCCAGGCAGTGCCCGCTCCGGCCACGCCC
ACGCCGCTCTGTACGCCTCCGGCGTTGCCGTTGCCGCCGCTGACACTCAC
ATTACCGCCGGCACTGCCGCCGCGATGGCTAACGGGACTGCCGCCCGACG
TGTCCAAATAGCCGCCCACTCGGGAATCTGGGGTGCAGGCGGAGGGTCTA
ACGGGCATACCGCCCGCCGGATTGTTCTGTCCGTTTGCATTGGCCGCATT
ACCGCCATTGGCATTGCCGGCTCCACCTGTTCCCGCCGCTCCGCCGCCAC
CACCGCCTCCGCCGCCACCCCCGCCGCCATTCGAGCCGCCCGTGTCCCAA
ATGTCTTTGTA
BO08616.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10388-PE | 1143 | Ubx-RE | 298..1140 | 861..19 | 4140 | 99.6 | Minus |
| CG10388-PD | 1092 | Ubx-RD | 298..745 | 861..414 | 2165 | 99.3 | Minus |
| CG10388-PB | 1041 | Ubx-RB | 298..742 | 861..417 | 2150 | 99.3 | Minus |
| CG10388-PA | 1170 | Ubx-RA | 298..741 | 861..418 | 2145 | 99.3 | Minus |
| CG10388-PC | 1119 | Ubx-RC | 298..741 | 861..418 | 2145 | 99.3 | Minus |
| CG10388-PF | 1068 | Ubx-RF | 298..741 | 861..418 | 2145 | 99.3 | Minus |
| CG10388-PA | 1170 | Ubx-RA | 767..1167 | 419..19 | 2005 | 100 | Minus |
| CG10388-PD | 1092 | Ubx-RD | 739..1089 | 369..19 | 1755 | 100 | Minus |
| CG10388-PC | 1119 | Ubx-RC | 767..1116 | 368..19 | 1750 | 100 | Minus |
| CG10388-PB | 1041 | Ubx-RB | 738..1038 | 319..19 | 1505 | 100 | Minus |
| CG10388-PF | 1068 | Ubx-RF | 767..1065 | 317..19 | 1495 | 100 | Minus |
| CG1030-PA | 1254 | Scr-RA | 1090..1146 | 183..127 | 210 | 94.7 | Minus |
| CG1030-PB | 1254 | Scr-RB | 1090..1146 | 183..127 | 210 | 94.7 | Minus |
| CG1030-PC | 1254 | Scr-RC | 1090..1146 | 183..127 | 210 | 94.7 | Minus |
| CG1030-PA | 1254 | Scr-RA | 989..1032 | 284..241 | 195 | 97.7 | Minus |
| CG1030-PB | 1254 | Scr-RB | 989..1032 | 284..241 | 195 | 97.7 | Minus |
| CG1030-PC | 1254 | Scr-RC | 989..1032 | 284..241 | 195 | 97.7 | Minus |
| CG10325-PA | 993 | abd-A-RA | 526..588 | 189..127 | 190 | 92 | Minus |
| CG10325-PB | 1773 | abd-A-RB | 1306..1368 | 189..127 | 190 | 92 | Minus |
| CG2189-PA | 1761 | Dfd-RA | 1217..1271 | 182..128 | 175 | 92.7 | Minus |
| CG2047-PA | 1233 | ftz-RA | 775..822 | 288..241 | 140 | 91.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:23:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ubx-RE | 3117 | CG10388-RE | 1261..2103 | 861..19 | 4170 | 99.6 | Minus |
| Ubx-RA | 4282 | CG10388-RA | 1261..2130 | 861..19 | 3870 | 96.6 | Minus |
| Ubx-RD | 2784 | CG10388-RD | 1261..1708 | 861..414 | 2195 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:23:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16732723..16733166 | 418..861 | 2175 | 99.3 | Plus |
| 3R | 32079331 | 3R | 16658775..16659075 | 19..319 | 1505 | 100 | Plus |
| 3R | 32079331 | 3R | 6825490..6825647 | 127..284 | 490 | 87.3 | Plus |
| 3R | 32079331 | 3R | 16810131..16810338 | 96..303 | 395 | 79.3 | Plus |
| 3R | 32079331 | 3R | 6898359..6898531 | 126..298 | 385 | 81.5 | Plus |
| 3R | 32079331 | 3R | 16725250..16725309 | 363..422 | 300 | 100 | Plus |
| 3R | 32079331 | 3R | 16710559..16710613 | 315..369 | 275 | 100 | Plus |
| 3R | 32079331 | 3R | 6801029..6801183 | 282..128 | 250 | 77.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:23:07 has no hits.
BO08616.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:47 Download gff for
BO08616.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubx-PE | 299..1143 | 18..860 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:48:21 Download gff for
BO08616.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10388-PE | 299..1143 | 18..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:24:31 Download gff for
BO08616.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubx-RE | 1462..2303 | 19..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:44:06 Download gff for
BO08616.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubx-RE | 1262..2103 | 19..860 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:44:06 Download gff for
BO08616.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16658775..16659073 | 19..317 | 100 | <- | Plus |
| 3R | 16710562..16710612 | 318..368 | 100 | <- | Plus |
| 3R | 16725256..16725306 | 369..419 | 100 | <- | Plus |
| 3R | 16732725..16733165 | 420..860 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:24:31 Download gff for
BO08616.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12484497..12484795 | 19..317 | 100 | <- | Plus |
| arm_3R | 12536284..12536334 | 318..368 | 100 | <- | Plus |
| arm_3R | 12550978..12551028 | 369..419 | 100 | <- | Plus |
| arm_3R | 12558447..12558887 | 420..860 | 99 | | Plus |
BO08616.5prime Sequence
808 bp (758 high quality bases) assembled on 2006-01-09
> BO08616.5prime
GAAGTTATCAGTCGACATGAACTCGTACTTTGAACAGGCCTCCGGCTTTT
ATGGCCATCCGCACCAGGCCACCGGAATGGCAATGGGCAGCGGTGGCCAC
CACGACCAGACGGCCAGTGCAGCGGCGGCCGCGTACAGAGGATTCCCTCT
CTCGCTGGGCATGAGTCCCTATGCCAACCACCATCTGCAGCGCACCACCC
AGGACTCGCCCTACGATGCCAGCATCACGGCCGCCTGCAACAAGATATAC
GGCGATGGAGCCGGAGCCTACAAACAGGACTGCCTGAACATCAAGGCGGA
TGCGGTGAATGGCTACAAAGACATTTGGAACACGGGCGGCTCGAATGGCG
GCGGGGGTGGCGGCGGAGGCGGTGGTGGCGGCGGAGCGGGCGGAACAGGT
GGAGCCGGCAATGCCAATGGCGGTAATGCGGCCAATGCAAACGGACAGAA
CAATCCGGCGGGCGGTATGCCCGTTAGACCCTCCGCCTGCACCCCAGATT
CCCGAGTGGGCGGCTATTTGGACACGTCGGGCGGCAGTCCCGTTAGCCAT
CGCGGCGGCAGTGCCGGCGGTAATGTGAGTGTCAGCGGCGGCAACGGCAA
CGCCGGAGGCGTACAGAGCGGCGTGGGCGTGGCCGGAGCGGGCACTGCCT
GGAATGCCAATTGCACCATCTCGGGCGCCGCTGCCCAAACGGCGGCCGCC
AGCAGTTTACACCAGGCCAGCAATCACACATTCTACCCCTGGATGGCTAT
CGCAGGTAAGATAAGATCTGATTTAACACAATACGGCGGCATATCAACAG
ACATGGGT
BO08616.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10388-PE | 1143 | Ubx-RE | 1..792 | 17..808 | 3960 | 100 | Plus |
| CG10388-PD | 1092 | Ubx-RD | 1..745 | 17..761 | 3725 | 100 | Plus |
| CG10388-PB | 1041 | Ubx-RB | 1..742 | 17..758 | 3710 | 100 | Plus |
| CG10388-PA | 1170 | Ubx-RA | 1..741 | 17..757 | 3705 | 100 | Plus |
| CG10388-PC | 1119 | Ubx-RC | 1..741 | 17..757 | 3705 | 100 | Plus |
| CG10388-PF | 1068 | Ubx-RF | 1..741 | 17..757 | 3705 | 100 | Plus |
| CG10388-PA | 1170 | Ubx-RA | 767..819 | 756..808 | 265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:56:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ubx-RE | 3117 | CG10388-RE | 964..1755 | 17..808 | 3960 | 100 | Plus |
| Ubx-RD | 2784 | CG10388-RD | 964..1708 | 17..761 | 3725 | 100 | Plus |
| Ubx-RB | 3628 | CG10388-RB | 964..1705 | 17..758 | 3710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:56:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16732723..16733463 | 757..17 | 3705 | 100 | Minus |
| 3R | 32079331 | 3R | 16725254..16725309 | 808..753 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:56:19 has no hits.
BO08616.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:48 Download gff for
BO08616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubx-PE | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:48:22 Download gff for
BO08616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10388-PE | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:25:16 Download gff for
BO08616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubx-RE | 1157..1955 | 9..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:10:00 Download gff for
BO08616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubx-RE | 957..1755 | 9..808 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:10:00 Download gff for
BO08616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16725254..16725306 | 756..808 | 100 | <- | Minus |
| 3R | 16732725..16733470 | 9..755 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:25:16 Download gff for
BO08616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12550976..12551028 | 756..808 | 100 | <- | Minus |
| arm_3R | 12558447..12559192 | 9..755 | 99 | | Minus |
BO08616.complete Sequence
1174 bp (1174 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631257
> BO08616.complete
GAAGTTATCAGTCGACATGAACTCGTACTTTGAACAGGCCTCCGGCTTTT
ATGGCCATCCGCACCAGGCCACCGGAATGGCAATGGGCAGCGGTGGCCAC
CACGACCAGACGGCCAGTGCAGCGGCGGCCGCGTACAGAGGATTCCCTCT
CTCGCTGGGCATGAGTCCCTATGCCAACCACCATCTGCAGCGCACCACCC
AGGACTCGCCCTACGATGCCAGCATCACGGCCGCCTGCAACAAGATATAC
GGCGATGGAGCCGGAGCCTACAAACAGGACTGCCTGAACATCAAGGCGGA
TGCGGTGAATGGCTACAAAGACATTTGGAACACGGGCGGCTCGAATGGCG
GCGGGGGTGGCGGCGGAGGCGGTGGTGGCGGCGGAGCGGGCGGAACAGGT
GGAGCCGGCAATGCCAATGGCGGTAATGCGGCCAATGCAAACGGACAGAA
CAATCCGGCGGGCGGTATGCCCGTTAGACCCTCCGCCTGCACCCCAGATT
CCCGAGTGGGCGGCTATTTGGACACGTCGGGCGGCAGTCCCGTTAGCCAT
CGCGGCGGCAGTGCCGGCGGTAATGTGAGTGTCAGCGGCGGCAACGGCAA
CGCCGGAGGCGTACAGAGCGGCGTGGGCGTGGCCGGAGCGGGCACTGCCT
GGAATGCCAATTGCACCATCTCGGGCGCCGCTGCCCAAACGGCGGCCGCC
AGCAGTTTACACCAGGCCAGCAATCACACATTCTACCCCTGGATGGCTAT
CGCAGGTAAGATAAGATCTGATTTAACACAATACGGCGGCATATCAACAG
ACATGGGTAAGAGATACTCAGAATCTCTTGCGGGCTCACTTCTACCAGAC
TGGCTAGGTACAAATGGTCTGCGAAGACGCGGCCGACAGACATACACCCG
CTACCAGACGCTCGAGCTGGAGAAGGAGTTCCACACGAATCATTATCTGA
CCCGCAGACGGAGAATCGAGATGGCGCACGCGCTATGCCTGACGGAGCGG
CAGATCAAGATCTGGTTCCAGAACCGGCGAATGAAGCTGAAGAAGGAGAT
CCAGGCGATCAAGGAGCTGAACGAACAGGAGAAGCAGGCGCAGGCCCAGA
AGGCGGCGGCGGCAGCGGCTGCGGCGGCGGCGGTCCAAGGTGGACACTTA
GATCAGGCAAGCTTTCTAGACCAT
BO08616.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:33:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ubx-RE | 1143 | CG10388-PE | 1..1140 | 17..1156 | 5700 | 100 | Plus |
| Ubx-RD | 1092 | CG10388-PD | 1..745 | 17..761 | 3725 | 100 | Plus |
| Ubx-RB | 1041 | CG10388-PB | 1..742 | 17..758 | 3710 | 100 | Plus |
| Ubx-RD | 1092 | CG10388-PD | 739..1089 | 806..1156 | 1755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:33:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ubx-RE | 3117 | CG10388-RE | 964..2103 | 17..1156 | 5700 | 100 | Plus |
| Ubx-RD | 2784 | CG10388-RD | 964..1708 | 17..761 | 3725 | 100 | Plus |
| Ubx-RB | 3628 | CG10388-RB | 964..1705 | 17..758 | 3710 | 100 | Plus |
| Ubx-RD | 2784 | CG10388-RD | 1702..2052 | 806..1156 | 1755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:33:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16732723..16733463 | 757..17 | 3705 | 100 | Minus |
| 3R | 32079331 | 3R | 16658775..16659075 | 1156..856 | 1505 | 100 | Minus |
| 3R | 32079331 | 3R | 6825490..6825647 | 1048..891 | 490 | 87.3 | Minus |
| 3R | 32079331 | 3R | 16810131..16810338 | 1079..872 | 395 | 79.3 | Minus |
| 3R | 32079331 | 3R | 6898359..6898531 | 1049..877 | 385 | 81.5 | Minus |
| 3R | 32079331 | 3R | 16725250..16725309 | 812..753 | 300 | 100 | Minus |
| 3R | 32079331 | 3R | 16710559..16710613 | 860..806 | 275 | 100 | Minus |
| 3R | 32079331 | 3R | 6801029..6801183 | 893..1047 | 250 | 77.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:33:29 has no hits.
BO08616.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:01 Download gff for
BO08616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubx-RE | 1..1143 | 17..1157 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:56:31 Download gff for
BO08616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubx-RE | 1164..2303 | 17..1158 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:34 Download gff for
BO08616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubx-RE | 1164..2303 | 17..1158 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:01 Download gff for
BO08616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubx-RE | 1157..2303 | 9..1156 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:30 Download gff for
BO08616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubx-RE | 964..2103 | 17..1158 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:30 Download gff for
BO08616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16658773..16659073 | 858..1158 | 99 | <- | Minus |
| 3R | 16710562..16710612 | 807..857 | 100 | <- | Minus |
| 3R | 16725256..16725306 | 756..806 | 100 | <- | Minus |
| 3R | 16732725..16733463 | 17..755 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:34 Download gff for
BO08616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12484495..12484795 | 858..1158 | 99 | <- | Minus |
| arm_3R | 12536284..12536334 | 807..857 | 100 | <- | Minus |
| arm_3R | 12550978..12551028 | 756..806 | 100 | <- | Minus |
| arm_3R | 12558447..12559185 | 17..755 | 100 | | Minus |
BO08616.pep Sequence
Translation from 16 to 1174
> BO08616.pep
MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMS
PYANHHLQRTTQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGY
KDIWNTGGSNGGGGGGGGGGGGGAGGTGGAGNANGGNAANANGQNNPAGG
MPVRPSACTPDSRVGGYLDTSGGSPVSHRGGSAGGNVSVSGGNGNAGGVQ
SGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFYPWMAIAGKIR
SDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQTYTRYQTLE
LEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKE
LNEQEKQAQAQKAAAAAAAAAAVQGGHLDQASFLDH
BO08616.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ubx-PE | 380 | CG10388-PE | 1..380 | 1..380 | 2023 | 100 | Plus |
| Ubx-PA | 389 | CG10388-PA | 1..389 | 1..380 | 2003 | 97.7 | Plus |
| Ubx-PC | 372 | CG10388-PC | 1..372 | 1..380 | 1924 | 96.1 | Plus |
| Ubx-PD | 363 | CG10388-PD | 1..363 | 1..380 | 1908 | 95.5 | Plus |
| Ubx-PF | 355 | CG10388-PF | 1..355 | 1..380 | 1817 | 91.6 | Plus |
