Clone Sequence Records
BO08618.5prime Sequence
551 bp (550 high quality bases) assembled on 2006-01-09
> BO08618.5prime
GAAGTTATCAGTCGACATGAACAACGGATTCAGCACCGGCGAGGAGGACA
GTCGCGGGCACACGGACCAAACGTGCTGCCTAATCGACGACATGGAGCGG
TGTCGCAACCAGGCTGGCTACGCCAGCTACTCCAAGCGCATCCAGAAGAC
GGTGGCCCAAAAGCGGCTCAAGCTCAGCAGCGATCCGGCCGCGCAGCACA
TTTACATCTGTGACCACCACAAGGAGCGCATCCAGTCGGTGCGCACCAAG
CGTCGGCGCAAGGACAGCGAGGACGACAGCAACGAGACGGACACGGACCT
GCACGAGTTCCCCGATCTCTACCAGCTGGGCGTGAGCACGCTGCGACGCT
ACAAGCGCCACTTCAAGGTCCAAACGAGGCAGGGCATGAAGCGGGCGCAG
CTGGCGGATACAATTATGAAACACTTCAAGACAATACCTATCAAGGAGAA
GGAGATCATCACATTCTTCGTGTACATGGTGAAGATGGGCTCGAATAAGC
TGGACCAGAAGAACGGCCTTGGCAACGACACCACCGCAAGCTTTCTAGAC
C
BO08618.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4756-PA | 522 | CG4756-RA | 1..519 | 17..535 | 2570 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 10:07:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sap30-RB | 1994 | CG4756-RB | 524..1042 | 17..535 | 2580 | 99.8 | Plus |
Sap30-RA | 1669 | CG4756-RA | 199..717 | 17..535 | 2580 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 10:07:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16787950..16788342 | 17..409 | 1965 | 100 | Plus |
X | 23542271 | X | 16788567..16788692 | 410..535 | 615 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-09 10:07:48 has no hits.
BO08618.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:50 Download gff for
BO08618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4756-PA | 1..522 | 17..538 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:48:26 Download gff for
BO08618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4756-PA | 1..522 | 17..538 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:27:06 Download gff for
BO08618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sap30-RA | 191..718 | 9..540 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:55:56 Download gff for
BO08618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sap30-RA | 195..722 | 9..540 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:55:56 Download gff for
BO08618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16787946..16788342 | 9..409 | 99 | -> | Plus |
X | 16788567..16788697 | 410..540 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:27:06 Download gff for
BO08618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16681979..16682375 | 9..409 | 99 | -> | Plus |
arm_X | 16682600..16682730 | 410..540 | 97 | | Plus |
BO08618.3prime Sequence
551 bp (550 high quality bases) assembled on 2006-01-09
> BO08618.3prime
ATGGTCTAGAAAGCTTGCGGTGGTGTCGTTGCCAAGGCCGTTCTTCTGGT
CCAGCTTATTCGAGCCCATCTTCACCATGTACACGAAGAATGTGATGATC
TCCTTCTCCTTGATAGGTATTGTCTTGAAGTGTTTCATAATTGTATCCGC
CAGCTGCGCCCGCTTCATGCCCTGCCTCGTTTGGACCTTGAAGTGGCGCT
TGTAGCGTCGCAGCGTGCTCACGCCCAGCTGGTAGAGATCGGGGAACTCG
TGCAGGTCCGTGTCCGTCTCGTTGCTGTCGTCCTCGCTGTCCTTGCGCCG
ACGCTTGGTGCGCACCGACTGGATGCGCTCCTTGTGGTGGTCACAGATGT
AAATGTGCTGCGCGGCCGGATCGCTGCTGAGCTTGAGCCGCTTTTGGGCC
ACCGTCTTCTGGATGCGCTTGGAGTAGCTGGCGTAGCCAGCCTGGTTGCG
ACACCGCTCCATGTCGTCGATTAGGCAGCACGTTTGGTCCGTGTGCCCGC
GACTGTCCTCCTCGCCGGTGCTGAATCCGTTGTTCATGTCGACTGATAAC
T
BO08618.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4756-PA | 522 | CG4756-RA | 1..519 | 537..19 | 2570 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:00:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sap30-RB | 1994 | CG4756-RB | 524..1042 | 537..19 | 2580 | 99.8 | Minus |
Sap30-RA | 1669 | CG4756-RA | 199..717 | 537..19 | 2580 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:59:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16787950..16788342 | 537..145 | 1965 | 100 | Minus |
X | 23542271 | X | 16788567..16788692 | 144..19 | 615 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:00:00 has no hits.
BO08618.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:49 Download gff for
BO08618.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4756-PA | 1..522 | 16..537 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:48:24 Download gff for
BO08618.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4756-PA | 1..522 | 16..537 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:39:26 Download gff for
BO08618.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sap30-RA | 191..718 | 14..545 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:52:27 Download gff for
BO08618.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sap30-RA | 195..722 | 14..545 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:52:27 Download gff for
BO08618.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16787946..16788342 | 145..545 | 99 | -> | Minus |
X | 16788567..16788697 | 14..144 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:39:26 Download gff for
BO08618.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16681979..16682375 | 145..545 | 99 | -> | Minus |
arm_X | 16682600..16682730 | 14..144 | 97 | | Minus |
BO08618.complete Sequence
553 bp assembled on 2006-10-09
GenBank Submission: FJ631258
> BO08618.complete
GAAGTTATCAGTCGACATGAACAACGGATTCAGCACCGGCGAGGAGGACA
GTCGCGGGCACACGGACCAAACGTGCTGCCTAATCGACGACATGGAGCGG
TGTCGCAACCAGGCTGGCTACGCCAGCTACTCCAAGCGCATCCAGAAGAC
GGTGGCCCAAAAGCGGCTCAAGCTCAGCAGCGATCCGGCCGCGCAGCACA
TTTACATCTGTGACCACCACAAGGAGCGCATCCAGTCGGTGCGCACCAAG
CGTCGGCGCAAGGACAGCGAGGACGACAGCAACGAGACGGACACGGACCT
GCACGAGTTCCCCGATCTCTACCAGCTGGGCGTGAGCACGCTGCGACGCT
ACAAGCGCCACTTCAAGGTCCAAACGAGGCAGGGCATGAAGCGGGCGCAG
CTGGCGGATACAATTATGAAACACTTCAAGACAATACCTATCAAGGAGAA
GGAGATCATCACATTCTTCGTGTACATGGTGAAGATGGGCTCGAATAAGC
TGGACCAGAAGAACGGCCTTGGCAACGACACCACCGCAAGCTTTCTAGAC
CAT
BO08618.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:31:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sap30-RB | 522 | CG4756-PB | 1..519 | 17..535 | 2580 | 99.8 | Plus |
Sap30-RA | 522 | CG4756-PA | 1..519 | 17..535 | 2580 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:31:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sap30-RB | 1994 | CG4756-RB | 524..1042 | 17..535 | 2580 | 99.8 | Plus |
Sap30-RA | 1669 | CG4756-RA | 199..717 | 17..535 | 2580 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:31:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16787950..16788342 | 17..409 | 1965 | 100 | Plus |
X | 23542271 | X | 16788567..16788692 | 410..535 | 615 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:31:44 has no hits.
BO08618.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:35:34 Download gff for
BO08618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4756-RA | 1..522 | 17..538 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:56:47 Download gff for
BO08618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4756-RA | 191..718 | 9..540 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:03 Download gff for
BO08618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sap30-RA | 195..713 | 17..537 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:35:35 Download gff for
BO08618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4756-RA | 191..718 | 9..540 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:06 Download gff for
BO08618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sap30-RA | 199..717 | 17..537 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:06 Download gff for
BO08618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16787950..16788342 | 17..409 | 100 | -> | Plus |
X | 16788567..16788692 | 410..537 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:03 Download gff for
BO08618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16681983..16682375 | 17..409 | 100 | -> | Plus |
arm_X | 16682600..16682725 | 410..537 | 97 | | Plus |
BO08618.pep Sequence
Translation from 16 to 553
> BO08618.pep
MNNGFSTGEEDSRGHTDQTCCLIDDMERCRNQAGYASYSKRIQKTVAQKR
LKLSSDPAAQHIYICDHHKERIQSVRTKRRRKDSEDDSNETDTDLHEFPD
LYQLGVSTLRRYKRHFKVQTRQGMKRAQLADTIMKHFKTIPIKEKEIITF
FVYMVKMGSNKLDQKNGLGNDTTASFLDH
BO08618.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sap30-PB | 173 | CG4756-PB | 1..173 | 1..173 | 913 | 100 | Plus |
Sap30-PA | 173 | CG4756-PA | 1..173 | 1..173 | 913 | 100 | Plus |