Clone BO08618 Report

Search the DGRC for BO08618

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:86
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptSap30-RA
Protein status:BO08618.pep: validated full length
Sequenced Size:553

Clone Sequence Records

BO08618.5prime Sequence

551 bp (550 high quality bases) assembled on 2006-01-09

> BO08618.5prime
GAAGTTATCAGTCGACATGAACAACGGATTCAGCACCGGCGAGGAGGACA
GTCGCGGGCACACGGACCAAACGTGCTGCCTAATCGACGACATGGAGCGG
TGTCGCAACCAGGCTGGCTACGCCAGCTACTCCAAGCGCATCCAGAAGAC
GGTGGCCCAAAAGCGGCTCAAGCTCAGCAGCGATCCGGCCGCGCAGCACA
TTTACATCTGTGACCACCACAAGGAGCGCATCCAGTCGGTGCGCACCAAG
CGTCGGCGCAAGGACAGCGAGGACGACAGCAACGAGACGGACACGGACCT
GCACGAGTTCCCCGATCTCTACCAGCTGGGCGTGAGCACGCTGCGACGCT
ACAAGCGCCACTTCAAGGTCCAAACGAGGCAGGGCATGAAGCGGGCGCAG
CTGGCGGATACAATTATGAAACACTTCAAGACAATACCTATCAAGGAGAA
GGAGATCATCACATTCTTCGTGTACATGGTGAAGATGGGCTCGAATAAGC
TGGACCAGAAGAACGGCCTTGGCAACGACACCACCGCAAGCTTTCTAGAC
C

BO08618.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG4756-PA 522 CG4756-RA 1..519 17..535 2570 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 10:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
Sap30-RB 1994 CG4756-RB 524..1042 17..535 2580 99.8 Plus
Sap30-RA 1669 CG4756-RA 199..717 17..535 2580 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 10:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16787950..16788342 17..409 1965 100 Plus
X 23542271 X 16788567..16788692 410..535 615 99.2 Plus
Blast to na_te.dros performed on 2015-02-09 10:07:48 has no hits.

BO08618.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:50 Download gff for BO08618.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4756-PA 1..522 17..538 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:48:26 Download gff for BO08618.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4756-PA 1..522 17..538 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:27:06 Download gff for BO08618.5prime
Subject Subject Range Query Range Percent Splice Strand
Sap30-RA 191..718 9..540 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:55:56 Download gff for BO08618.5prime
Subject Subject Range Query Range Percent Splice Strand
Sap30-RA 195..722 9..540 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:55:56 Download gff for BO08618.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16787946..16788342 9..409 99 -> Plus
X 16788567..16788697 410..540 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:27:06 Download gff for BO08618.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16681979..16682375 9..409 99 -> Plus
arm_X 16682600..16682730 410..540 97   Plus

BO08618.3prime Sequence

551 bp (550 high quality bases) assembled on 2006-01-09

> BO08618.3prime
ATGGTCTAGAAAGCTTGCGGTGGTGTCGTTGCCAAGGCCGTTCTTCTGGT
CCAGCTTATTCGAGCCCATCTTCACCATGTACACGAAGAATGTGATGATC
TCCTTCTCCTTGATAGGTATTGTCTTGAAGTGTTTCATAATTGTATCCGC
CAGCTGCGCCCGCTTCATGCCCTGCCTCGTTTGGACCTTGAAGTGGCGCT
TGTAGCGTCGCAGCGTGCTCACGCCCAGCTGGTAGAGATCGGGGAACTCG
TGCAGGTCCGTGTCCGTCTCGTTGCTGTCGTCCTCGCTGTCCTTGCGCCG
ACGCTTGGTGCGCACCGACTGGATGCGCTCCTTGTGGTGGTCACAGATGT
AAATGTGCTGCGCGGCCGGATCGCTGCTGAGCTTGAGCCGCTTTTGGGCC
ACCGTCTTCTGGATGCGCTTGGAGTAGCTGGCGTAGCCAGCCTGGTTGCG
ACACCGCTCCATGTCGTCGATTAGGCAGCACGTTTGGTCCGTGTGCCCGC
GACTGTCCTCCTCGCCGGTGCTGAATCCGTTGTTCATGTCGACTGATAAC
T

BO08618.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG4756-PA 522 CG4756-RA 1..519 537..19 2570 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:00:04
Subject Length Description Subject Range Query Range Score Percent Strand
Sap30-RB 1994 CG4756-RB 524..1042 537..19 2580 99.8 Minus
Sap30-RA 1669 CG4756-RA 199..717 537..19 2580 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16787950..16788342 537..145 1965 100 Minus
X 23542271 X 16788567..16788692 144..19 615 99.2 Minus
Blast to na_te.dros performed on 2015-02-12 00:00:00 has no hits.

BO08618.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:49 Download gff for BO08618.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4756-PA 1..522 16..537 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:48:24 Download gff for BO08618.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4756-PA 1..522 16..537 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:39:26 Download gff for BO08618.3prime
Subject Subject Range Query Range Percent Splice Strand
Sap30-RA 191..718 14..545 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:52:27 Download gff for BO08618.3prime
Subject Subject Range Query Range Percent Splice Strand
Sap30-RA 195..722 14..545 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:52:27 Download gff for BO08618.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16787946..16788342 145..545 99 -> Minus
X 16788567..16788697 14..144 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:39:26 Download gff for BO08618.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16681979..16682375 145..545 99 -> Minus
arm_X 16682600..16682730 14..144 97   Minus

BO08618.complete Sequence

553 bp assembled on 2006-10-09

GenBank Submission: FJ631258

> BO08618.complete
GAAGTTATCAGTCGACATGAACAACGGATTCAGCACCGGCGAGGAGGACA
GTCGCGGGCACACGGACCAAACGTGCTGCCTAATCGACGACATGGAGCGG
TGTCGCAACCAGGCTGGCTACGCCAGCTACTCCAAGCGCATCCAGAAGAC
GGTGGCCCAAAAGCGGCTCAAGCTCAGCAGCGATCCGGCCGCGCAGCACA
TTTACATCTGTGACCACCACAAGGAGCGCATCCAGTCGGTGCGCACCAAG
CGTCGGCGCAAGGACAGCGAGGACGACAGCAACGAGACGGACACGGACCT
GCACGAGTTCCCCGATCTCTACCAGCTGGGCGTGAGCACGCTGCGACGCT
ACAAGCGCCACTTCAAGGTCCAAACGAGGCAGGGCATGAAGCGGGCGCAG
CTGGCGGATACAATTATGAAACACTTCAAGACAATACCTATCAAGGAGAA
GGAGATCATCACATTCTTCGTGTACATGGTGAAGATGGGCTCGAATAAGC
TGGACCAGAAGAACGGCCTTGGCAACGACACCACCGCAAGCTTTCTAGAC
CAT

BO08618.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:31:45
Subject Length Description Subject Range Query Range Score Percent Strand
Sap30-RB 522 CG4756-PB 1..519 17..535 2580 99.8 Plus
Sap30-RA 522 CG4756-PA 1..519 17..535 2580 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:31:46
Subject Length Description Subject Range Query Range Score Percent Strand
Sap30-RB 1994 CG4756-RB 524..1042 17..535 2580 99.8 Plus
Sap30-RA 1669 CG4756-RA 199..717 17..535 2580 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:31:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16787950..16788342 17..409 1965 100 Plus
X 23542271 X 16788567..16788692 410..535 615 99.2 Plus
Blast to na_te.dros performed on 2014-11-27 20:31:44 has no hits.

BO08618.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:35:34 Download gff for BO08618.complete
Subject Subject Range Query Range Percent Splice Strand
CG4756-RA 1..522 17..538 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:56:47 Download gff for BO08618.complete
Subject Subject Range Query Range Percent Splice Strand
CG4756-RA 191..718 9..540 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:03 Download gff for BO08618.complete
Subject Subject Range Query Range Percent Splice Strand
Sap30-RA 195..713 17..537 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:35:35 Download gff for BO08618.complete
Subject Subject Range Query Range Percent Splice Strand
CG4756-RA 191..718 9..540 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:06 Download gff for BO08618.complete
Subject Subject Range Query Range Percent Splice Strand
Sap30-RA 199..717 17..537 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:06 Download gff for BO08618.complete
Subject Subject Range Query Range Percent Splice Strand
X 16787950..16788342 17..409 100 -> Plus
X 16788567..16788692 410..537 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:03 Download gff for BO08618.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16681983..16682375 17..409 100 -> Plus
arm_X 16682600..16682725 410..537 97   Plus

BO08618.pep Sequence

Translation from 16 to 553

> BO08618.pep
MNNGFSTGEEDSRGHTDQTCCLIDDMERCRNQAGYASYSKRIQKTVAQKR
LKLSSDPAAQHIYICDHHKERIQSVRTKRRRKDSEDDSNETDTDLHEFPD
LYQLGVSTLRRYKRHFKVQTRQGMKRAQLADTIMKHFKTIPIKEKEIITF
FVYMVKMGSNKLDQKNGLGNDTTASFLDH

BO08618.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:04
Subject Length Description Subject Range Query Range Score Percent Strand
Sap30-PB 173 CG4756-PB 1..173 1..173 913 100 Plus
Sap30-PA 173 CG4756-PA 1..173 1..173 913 100 Plus