Clone Sequence Records
BO08619.3prime Sequence
883 bp (881 high quality bases) assembled on 2006-01-09
> BO08619.3prime
ATGGTCTAGAAAGCTTGCCGACCCGGAACGCCCGCCCTCCGTTAGATAGG
CATTACTAGTGACGCCCATGTGCCCATGCCCATGCCCGAGTCCATGTCCA
TGCCCGAGTCCATGTCCGTGGCCATGCCCATGTCCATGACTGTGTCCGTG
TCCATATCCACTGTCCGTATTACTGTACAAAATGTTGACCATGGAAGCCA
CCGTCACCGGAGTGACGGAATGCATCGAGGAACTGTGGCTGCTCCCGCTG
CTGCTGCTGCTGCCGCCGCTGCTGTTCAGCTTCATAGTGGGTGGTGTCTG
GGGCGGAGTATCGGGCTGGATCTCGGGAAACCCCACCCGCTGTGGCGCCG
GATGGATATGAGTGGGTGGCAGCTTGCCGGTGGAGGAACTGGAACTGCTG
CTGCTGGGCAGATGCATGCCCATGGCTTCGGTGTACGCCGTAGGTATCCG
CGAATATGGCGATCCGCCGGCGTAGCTGCTCATCATACTCAGCGGCGAAC
CGAGCTCCATCGAGTGGTGCGGATGATGATGGTGCGGGTGGTGGTGGTGC
TGTTGCTGCTGCTGCAACTGCTGCAGCTGCTGTTGCTGATGCTGCTGGAG
CGGCTGGTGAGGCAACTGCTGGTCCGCCGATGAGGGTGGATAGAAGTTCT
GGCCGAGGTACGCCGCGGTGGGCGGTGGTGTCTTGCAGGCGGCTGTGTCG
GCCACGCTCCAGATCTTGGGCTTGCTCGCCGGAACTGGGATGCCACAGTC
TCTGCTCAGCGGGTTTTTTTGGGCCGCAAATTCACCCGATTCCTCCTGGC
CATAGCCACCCGGATGATAGTACGGCTGATCCATTTGATGGTGCTGCAGC
TGCTGCTGATTCTGCTGCTGCTGCTGCTGCTGT
BO08619.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10605-PA | 2082 | caup-RA | 1215..2079 | 883..19 | 4325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:26:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| caup-RA | 4317 | CG10605-RA | 2353..3217 | 883..19 | 4325 | 100 | Minus |
| ara-RB | 2918 | CG10571-RB | 1751..1849 | 769..671 | 210 | 80.8 | Minus |
| ara-RA | 2942 | CG10571-RA | 1775..1873 | 769..671 | 210 | 80.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:26:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12619834..12620698 | 883..19 | 4325 | 100 | Minus |
| 3L | 28110227 | 3L | 12594851..12594949 | 769..671 | 210 | 80.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:26:39 has no hits.
BO08619.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:51 Download gff for
BO08619.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| caup-PA | 1215..2082 | 15..883 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:48:27 Download gff for
BO08619.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10605-PA | 1215..2082 | 15..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:12:56 Download gff for
BO08619.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| caup-RA | 2353..3222 | 11..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:27:38 Download gff for
BO08619.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| caup-RA | 2353..3222 | 11..883 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:27:38 Download gff for
BO08619.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12619834..12620703 | 11..883 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:12:56 Download gff for
BO08619.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12612934..12613803 | 11..883 | 99 | | Minus |
BO08619.5prime Sequence
875 bp (780 high quality bases) assembled on 2006-01-09
> BO08619.5prime
GAAGTTATCAGTCGACATGGCTGCATATGCGCAGTTTGGATACGCTGGCT
ACCCGACGGCAAATCAGCTGACTACCGCCAATACCGATAGCCAGAGCGGC
CATGGCGGAGGATCGCCGCTATCCGGCACGAATGAGGCTTCGCTGAGTCC
CTCGGGCGGCTCGACGGCCACCGGCCTGACTGCCGGTCCTCTGAGTCCAG
GTGCTGTTTCCCAGTCGTCGCATCATGCGGGCCACAAGGGTCTCTCCACA
TCGCCGGCGGAGGATGTGGTTGGTGGCGATGTGCCCGTTGGCCTTTCATC
TGCTGCCCAGGACTTGCCCAGCCGGGGATCCTGTTGCGAGAACGGCAGAC
CCATCATCACGGATCCCGTATCGGGACAAACCGTGTGCTCCTGCCAGTAC
GATCCGGCCCGACTGGCCATCGGTGGCTATTCCCGCATGGCCCTGCCCTC
CGGCGGCGTGGGAGTTGGCGTCTACGGCGGACCGTATCCCTCTAACGAAC
AGAACCCTTACCCCAGCATCGGAGTGGACAACTCGGCCTTCTACGCACCT
CTGAGCAATCCCTACGGCATCAAGGACACCAGTCCCAGCACCGAGATGAG
CGCCTGGACATCCGCCAGCCTGCAGTCAACCACCGGATACTATTCCTACG
ATCCCACGCTGGCGGCCTACGGATACGGACCCAACTATGATCTCGCCGCC
AGGCGGAAGAACGCCACGCGGGAATCCACGGCCACGTTGAAGGCCTGGCT
GAGTGAGCACAAGAAGAATCCATATCCGACGAAAGGTGAGAAGATTATGC
TGGCCATCATCACCAAGATGACCCTCACCCAGGTGTCCACGTGGTTTGCC
AATGCACGTCGTCGGCTGAAAAAGG
BO08619.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10605-PA | 2082 | caup-RA | 1..859 | 17..875 | 4270 | 99.8 | Plus |
| CG10571-PA | 2154 | ara-RA | 784..932 | 713..861 | 470 | 92.6 | Plus |
| CG10601-PA | 1926 | mirr-RA | 775..830 | 797..852 | 155 | 91 | Plus |
| CG10601-PB | 1926 | mirr-RB | 775..830 | 797..852 | 155 | 91 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:27:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| caup-RA | 4317 | CG10605-RA | 1139..1997 | 17..875 | 4280 | 99.9 | Plus |
| ara-RB | 2918 | CG10571-RB | 819..1353 | 326..875 | 825 | 77.7 | Plus |
| ara-RA | 2942 | CG10571-RA | 1215..1377 | 713..875 | 605 | 91.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:27:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12616800..12617288 | 65..553 | 2445 | 100 | Plus |
| 3L | 28110227 | 3L | 12618341..12618544 | 672..875 | 1005 | 99.5 | Plus |
| 3L | 28110227 | 3L | 12594229..12594391 | 713..875 | 605 | 91.4 | Plus |
| 3L | 28110227 | 3L | 12617590..12617709 | 553..672 | 600 | 100 | Plus |
| 3L | 28110227 | 3L | 12707397..12707551 | 698..852 | 415 | 84.5 | Plus |
| 3L | 28110227 | 3L | 12610769..12610819 | 17..67 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 01:27:43 has no hits.
BO08619.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:53 Download gff for
BO08619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| caup-PA | 1..859 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:48:28 Download gff for
BO08619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10605-PA | 1..859 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:41:11 Download gff for
BO08619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| caup-RA | 1134..1997 | 10..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:29:38 Download gff for
BO08619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| caup-RA | 1134..1997 | 10..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:29:38 Download gff for
BO08619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12610764..12610819 | 10..67 | 94 | -> | Plus |
| 3L | 12616803..12617288 | 68..553 | 100 | -> | Plus |
| 3L | 12617591..12617709 | 554..672 | 100 | -> | Plus |
| 3L | 12618342..12618544 | 673..875 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:41:11 Download gff for
BO08619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12603864..12603919 | 10..67 | 94 | -> | Plus |
| arm_3L | 12609903..12610388 | 68..553 | 100 | -> | Plus |
| arm_3L | 12610691..12610809 | 554..672 | 100 | -> | Plus |
| arm_3L | 12611442..12611644 | 673..875 | 99 | | Plus |
BO08619.complete Sequence
2113 bp assembled on 2008-08-14
GenBank Submission: FJ631259
> BO08619.complete
GAAGTTATCAGTCGACATGGCTGCATATGCGCAGTTTGGATACGCTGGCT
ACCCGACGGCAAATCAGCTGACTACCGCCAATACCGATAGCCAGAGCGGC
CATGGCGGAGGATCGCCGCTATCCGGCACGAATGAGGCTTCGCTGAGTCC
CTCGGGCGGCTCGACGGCCACCGGCCTGACTGCCGGTCCTCTGAGTCCAG
GTGCTGTTTCCCAGTCGTCGCATCATGCGGGCCACAAGGGTCTCTCCACA
TCGCCGGCGGAGGATGTGGTTGGTGGCGATGTGCCCGTTGGCCTTTCATC
TGCTGCCCAGGACTTGCCCAGCCGGGGATCCTGTTGCGAGAACGGCAGAC
CCATCATCACGGATCCCGTATCGGGACAAACCGTGTGCTCCTGCCAGTAC
GATCCGGCCCGACTGGCCATCGGTGGCTATTCCCGCATGGCCCTGCCCTC
CGGCGGCGTGGGAGTTGGCGTCTACGGCGGACCGTATCCCTCTAACGAAC
AGAACCCTTACCCCAGCATCGGAGTGGACAACTCGGCCTTCTACGCACCT
CTGAGCAATCCCTACGGCATCAAGGACACCAGTCCCAGCACCGAGATGAG
CGCCTGGACATCCGCCAGCCTGCAGTCAACCACCGGATACTATTCCTACG
ATCCCACGCTGGCGGCCTACGGATACGGACCCAACTATGATCTCGCCGCC
AGGCGGAAGAACGCCACGCGGGAATCCACGGCCACGTTGAAGGCCTGGCT
GAGTGAGCACAAGAAGAATCCATATCCGACGAAGGGTGAGAAGATTATGC
TGGCCATCATCACCAAGATGACCCTCACCCAGGTGTCCACGTGGTTTGCC
AATGCACGTCGTCGGCTGAAAAAGGAGAACAAGATGACGTGGGAGCCGAA
GAATAAGACGGAGGACGATGATGATGGCATGATGTCCGACGATGAGAAGG
AAAAGGATGCTGGCGATGGTGGGAAACTCTCTACAGAAGCTTTCGATCCC
GGCAATCAACTTATCAAATCCGAACTGGGCAAGGCGGAGAAGGAGGTGGA
CAGTAGTGGTGACCAGAAACTGGATCTGGACCGGGAGCCACACAATCTGG
TGGCCATGCGTGGACTGGCGCCATATGCCACGCCCCCAGGCGCCCATCCA
ATGCACGCGGCATACAGTTCGTATGCGCAATCCCACAACACGCATACGCA
CCCTCATCCCCAGCAAATGCAACACCACCAACAGCAGCAGCAGCAGCAGC
AGAATCAGCAGCAGCTGCAGCACCATCAAATGGATCAGCCGTACTATCAT
CCGGGTGGCTATGGCCAGGAGGAATCGGGTGAATTTGCGGCCCAAAAAAA
CCCGCTGAGCAGAGACTGTGGCATCCCAGTTCCGGCGAGCAAGCCCAAGA
TCTGGAGCGTGGCCGACACAGCCGCCTGCAAGACACCACCGCCCACCGCG
GCGTACCTCGGCCAGAACTTCTATCCACCCTCATCGGCGGACCAGCAGTT
GCCTCACCAGCCGCTCCAGCAGCATCAGCAACAGCAGCTGCAGCAGTTGC
AGCAGCAGCAACAGCACCACCACCACCCGCACCATCATCATCCGCACCAC
TCGATGGAGCTCGGTTCGCCGCTGAGTATGATGAGCAGCTACGCCGGCGG
ATCGCCATATTCGCGGATACCTACGGCGTACACCGAAGCCATGGGCATGC
ATCTGCCCAGCAGCAGCAGTTCCAGTTCCTCCACCGGCAAGCTGCCACCC
ACTCATATCCATCCGGCGCCACAGCGGGTGGGGTTTCCCGAGATCCAGCC
CGATACTCCGCCCCAGACACCACCCACTATGAAGCTGAACAGCAGCGGCG
GCAGCAGCAGCAGCAGCGGGAGCAGCCACAGTTCCTCGATGCATTCCGTC
ACTCCGGTGACGGTGGCTTCCATGGTCAACATTTTGTACAGTAATACGGA
CAGTGGATATGGACACGGACACAGTCATGGACATGGGCATGGCCACGGAC
ATGGACTCGGGCATGGACATGGACTCGGGCATGGGCATGGGCACATGGGC
GTCACTAGTAATGCCTATCTAACGGAGGGCGGGCGTTCCGGGTCGGCAAG
CTTTCTAGACCAT
BO08619.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:49:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| caup-RA | 2082 | CG10605-PA | 1..2079 | 17..2095 | 10395 | 100 | Plus |
| ara-RB | 2130 | CG10571-PB | 514..1004 | 464..957 | 1025 | 81 | Plus |
| ara-RA | 2154 | CG10571-PA | 784..1028 | 713..957 | 850 | 89.8 | Plus |
| ara-RB | 2130 | CG10571-PB | 1320..1418 | 1345..1443 | 210 | 80.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:49:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| caup-RA | 4317 | CG10605-RA | 1139..3217 | 17..2095 | 10395 | 100 | Plus |
| ara-RB | 2918 | CG10571-RB | 945..1435 | 464..957 | 1025 | 81 | Plus |
| ara-RA | 2942 | CG10571-RA | 1215..1459 | 713..957 | 850 | 89.8 | Plus |
| ara-RB | 2918 | CG10571-RB | 1751..1849 | 1345..1443 | 210 | 80.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:49:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12619594..12620698 | 991..2095 | 5510 | 99.9 | Plus |
| 3L | 28110227 | 3L | 12616800..12617288 | 65..553 | 2445 | 100 | Plus |
| 3L | 28110227 | 3L | 12618341..12618664 | 672..995 | 1620 | 100 | Plus |
| 3L | 28110227 | 3L | 12594229..12594473 | 713..957 | 850 | 89.8 | Plus |
| 3L | 28110227 | 3L | 12617590..12617709 | 553..672 | 600 | 100 | Plus |
| 3L | 28110227 | 3L | 12707397..12707603 | 698..904 | 525 | 83.6 | Plus |
| 3L | 28110227 | 3L | 12610769..12610819 | 17..67 | 255 | 100 | Plus |
| 3L | 28110227 | 3L | 12594851..12594949 | 1345..1443 | 210 | 80.8 | Plus |
| X | 23542271 | X | 8042589..8042649 | 1279..1219 | 200 | 88.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:49:36 has no hits.
BO08619.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:43:19 Download gff for
BO08619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| caup-RA | 639..2727 | 10..2103 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:03 Download gff for
BO08619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| caup-RA | 1139..3217 | 17..2097 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:24 Download gff for
BO08619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| caup-RA | 644..2722 | 17..2097 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:27:54 Download gff for
BO08619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| caup-RA | 1139..3217 | 17..2097 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:27:54 Download gff for
BO08619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12610769..12610819 | 17..67 | 100 | -> | Plus |
| 3L | 12616803..12617288 | 68..553 | 100 | -> | Plus |
| 3L | 12617591..12617709 | 554..672 | 100 | -> | Plus |
| 3L | 12618342..12618664 | 673..995 | 100 | -> | Plus |
| 3L | 12619599..12620698 | 996..2097 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:03 Download gff for
BO08619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12603869..12603919 | 17..67 | 100 | -> | Plus |
| arm_3L | 12610691..12610809 | 554..672 | 100 | -> | Plus |
| arm_3L | 12609903..12610388 | 68..553 | 100 | -> | Plus |
| arm_3L | 12611442..12611764 | 673..995 | 100 | -> | Plus |
| arm_3L | 12612699..12613798 | 996..2097 | 99 | | Plus |
BO08619.pep Sequence
Translation from 16 to 2113
> BO08619.pep
MAAYAQFGYAGYPTANQLTTANTDSQSGHGGGSPLSGTNEASLSPSGGST
ATGLTAGPLSPGAVSQSSHHAGHKGLSTSPAEDVVGGDVPVGLSSAAQDL
PSRGSCCENGRPIITDPVSGQTVCSCQYDPARLAIGGYSRMALPSGGVGV
GVYGGPYPSNEQNPYPSIGVDNSAFYAPLSNPYGIKDTSPSTEMSAWTSA
SLQSTTGYYSYDPTLAAYGYGPNYDLAARRKNATRESTATLKAWLSEHKK
NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWEPKNKTED
DDDGMMSDDEKEKDAGDGGKLSTEAFDPGNQLIKSELGKAEKEVDSSGDQ
KLDLDREPHNLVAMRGLAPYATPPGAHPMHAAYSSYAQSHNTHTHPHPQQ
MQHHQQQQQQQQNQQQLQHHQMDQPYYHPGGYGQEESGEFAAQKNPLSRD
CGIPVPASKPKIWSVADTAACKTPPPTAAYLGQNFYPPSSADQQLPHQPL
QQHQQQQLQQLQQQQQHHHHPHHHHPHHSMELGSPLSMMSSYAGGSPYSR
IPTAYTEAMGMHLPSSSSSSSSTGKLPPTHIHPAPQRVGFPEIQPDTPPQ
TPPTMKLNSSGGSSSSSGSSHSSSMHSVTPVTVASMVNILYSNTDSGYGH
GHSHGHGHGHGHGLGHGHGLGHGHGHMGVTSNAYLTEGGRSGSASFLDH
BO08619.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:03:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| caup-PA | 693 | CG10605-PA | 1..693 | 1..693 | 3759 | 100 | Plus |
| ara-PB | 709 | CG10571-PB | 1..630 | 1..609 | 1301 | 46.4 | Plus |
| ara-PA | 717 | CG10571-PA | 1..638 | 1..609 | 1282 | 45.8 | Plus |
| mirr-PB | 641 | CG10601-PB | 31..638 | 38..635 | 642 | 33.8 | Plus |
| mirr-PA | 641 | CG10601-PA | 31..638 | 38..635 | 642 | 33.8 | Plus |
