Clone Sequence Records
BO08620.3prime Sequence
918 bp (796 high quality bases) assembled on 2006-01-09
> BO08620.3prime
ATGGTCTAGAAAGCTTGCTGACCAGTACTTGGCCTGACCCTGCGTCGGCA
GGGGGTGGCTGTAGGCGGAGGCCGGGTTCCCGTGAGCCGCTGCAGCGGCA
TAGTCATTGAGCTGGTGCTGGGCTACGTGGGCATTGTAGTTGGCGGCGGC
GTGGTAGGCGGCCTGTGACCAGTTTGAGGGAGCCTCCAGCTTCGAGTAGT
TGTCGCTGAGGTGTAGTGAGGGCGAGATCTTTGAGACACTGTCGGCGGTG
AGCTTTGAGAAGTCGTCAATGGTCAGCTTGGAATAGTCTTGATGGTAATA
GTTTTGACTACCAAAGTGTCCCGGCTGAGCAAAGCCCCCGGGAAATCCGT
GTTGAGCCGCACTTTGGACCAAATCGTAGCCACCCATCTGTGTGTGATGG
TGTGCCGCTGCAGCAGCCGTTGCTGCGCTGTGGTGGGAGCTTGGTGCGTG
TGCGGCGTGGTGAACTCCGTCGTTCATCCCAGCTCCAGTGGCAGTGGTTC
CCGGCGCAGGACTGTAGCCCGCCATCGAACCAACTCCCAAAGGGCCGTAG
CCAAGTGGTGCTGTCGCCCCACTGAGCCCAACACCCACGCCCACATTAGA
GCTTCCACTGTTCATGGGCGAAAGCCCGGAGTTTGAGCCGCCAGAGTGCT
TGCGAAGGCGTGCCCTGCGGTTGGAGAACCATACCTGGATACGGGCTTCG
GTGAGGGCCGTGGTCTGAGCCAGCTCTTCCCGGGTGTAGACGTCCGGGTA
TTGGGTGCGGGAAAAGGCTCGCTCGAGTGCCTCTAGCTGCTCGGCGGTGA
AAGTGGTGCGGGAGCGACGCTGCTTGCGTTTCAGCGGAATCCCAGGCTCC
CGATTCCGTGTCACTTATATCTGAGTCTCGCCCTCCAAAATTCCATTTAT
GGTATAGTCCTTCCGACC
BO08620.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2692-PA | 1350 | gsb-n-RA | 516..1347 | 850..19 | 4135 | 99.8 | Minus |
CG2692-PA | 1350 | gsb-n-RA | 479..517 | 888..850 | 195 | 100 | Minus |
CG2692-PA | 1350 | gsb-n-RA | 448..477 | 918..889 | 150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:24:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gsb-n-RA | 2237 | CG2692-RA | 771..1670 | 918..19 | 4440 | 99.7 | Minus |
gsb-RA | 1649 | CG3388-RA | 746..912 | 813..647 | 220 | 75.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:24:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 25041333..25041928 | 288..884 | 2920 | 99.7 | Plus |
2R | 25286936 | 2R | 25040950..25041220 | 19..289 | 1355 | 100 | Plus |
2R | 25286936 | 2R | 25063740..25063906 | 813..647 | 220 | 75.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:24:43 has no hits.
BO08620.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:54 Download gff for
BO08620.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gsb-n-PA | 448..1350 | 16..918 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:48:29 Download gff for
BO08620.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2692-PA | 448..1350 | 16..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:31:46 Download gff for
BO08620.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gsb-n-RA | 771..1670 | 19..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:46:02 Download gff for
BO08620.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gsb-n-RA | 771..1670 | 19..918 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:46:02 Download gff for
BO08620.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 25040950..25041218 | 19..287 | 100 | <- | Plus |
2R | 25041333..25041926 | 288..882 | 99 | <- | Plus |
2R | 25048047..25048083 | 883..918 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:31:46 Download gff for
BO08620.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20928473..20928741 | 19..287 | 100 | <- | Plus |
arm_2R | 20928856..20929449 | 288..882 | 99 | <- | Plus |
arm_2R | 20935570..20935606 | 883..918 | 97 | | Plus |
BO08620.5prime Sequence
844 bp (799 high quality bases) assembled on 2006-01-09
> BO08620.5prime
GAAGTTATCAGTCGACATGGATATGTCCAGCGCGAACTCGTTGCGGCCCC
TTTTCGCAGGGTATCCCTTTCAAGGACAAGGCCGGGTAAATCAGCTTGGG
GGCGTCTTTATCAATGGACGTCCGTTGCCCAATCACATTCGACTGAAGAT
CGTGGAAATGGCGGCCAGTGGAGTGCGGCCTTGTGTAATATCGCGCCAGC
TCCGCGTGTCTCACGGCTGCGTATCGAAGATTCTGAACCGATACCAGGAG
ACGGGTTCTATTAGACCGGGCGTAATAGGTGGATCTAAGCCCAAGGTGAC
CTCTCCCGAAATTGAAACGCGGATCGATGAGCTGCGAAAGGAAAACCCCA
GCATATTCAGCTGGGAAATACGCGAAAAGCTGATAAAGGAGGGCTTTGCG
GATCCACCATCAACATCGTCGATCAGTCGCTTATTGCGGGGAAGCGATCG
CGGCAGCGAAGATGGTCGGAAGGACTATACCATAAATGGAATTCTTGGAG
GGCGAGACTCAGATATAAGTGACACGGAATCGGAGCCTGGGATTCCGCTG
AAACGCAAGCAGCGTCGCTCCCGCACCACCTTCACCGCCGAGCAGCTAGA
GGCACTCGAGCGAGCCTTTTCCCGCACCCAATACCCGGACGTCTACACCC
GGGAAGAGCTGGCTCAGACCACGGCCCTCACCGAAGCCCGTATCCAGGTA
TGGTTCTCCAACCGCAGGGCACGCCTTCGCAAGCACTCTGGCGGCTCAAA
CTCCGGGCTTTCGCCCATGAACAGTGGAAGCTCTAATGTGGGCGTGGGTG
TTGGGCTCAGTGGGGCGACAGCACCACTTGGCTACGGCCCTTTG
BO08620.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2692-PA | 1350 | gsb-n-RA | 1..828 | 17..844 | 4140 | 100 | Plus |
CG6716-PA | 1773 | prd-RA | 151..218 | 215..282 | 140 | 88.2 | Plus |
CG6716-PB | 1842 | prd-RB | 220..287 | 215..282 | 140 | 88.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:03:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gsb-n-RA | 2237 | CG2692-RA | 323..1151 | 16..844 | 4145 | 100 | Plus |
gsb-RA | 1649 | CG3388-RA | 227..447 | 62..282 | 460 | 81.6 | Plus |
prd-RB | 2459 | CG6716-RB | 392..594 | 89..291 | 370 | 78.8 | Plus |
gsb-RA | 1649 | CG3388-RA | 746..912 | 569..735 | 220 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:03:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 25041583..25041928 | 844..499 | 1730 | 100 | Minus |
2R | 25286936 | 2R | 25051309..25051625 | 389..73 | 1585 | 100 | Minus |
2R | 25286936 | 2R | 25048046..25048160 | 501..387 | 575 | 100 | Minus |
2R | 25286936 | 2R | 25063228..25063441 | 69..282 | 410 | 79.4 | Plus |
2L | 23513712 | 2L | 12084860..12085062 | 291..89 | 370 | 78.8 | Minus |
2R | 25286936 | 2R | 25051950..25052009 | 75..16 | 300 | 100 | Minus |
2R | 25286936 | 2R | 25063740..25063906 | 569..735 | 220 | 75.4 | Plus |
2L | 23513712 | 2L | 12084344..12084530 | 735..549 | 185 | 73.3 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:03:50 has no hits.
BO08620.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:55 Download gff for
BO08620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gsb-n-PA | 1..828 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:48:30 Download gff for
BO08620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2692-PA | 1..828 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:13:15 Download gff for
BO08620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gsb-n-RA | 310..1151 | 5..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:44:56 Download gff for
BO08620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gsb-n-RA | 310..1151 | 5..844 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:44:56 Download gff for
BO08620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 25041583..25041926 | 501..844 | 100 | <- | Minus |
2R | 25048047..25048158 | 389..500 | 100 | <- | Minus |
2R | 25051310..25051623 | 75..388 | 100 | <- | Minus |
2R | 25051951..25052021 | 5..74 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:13:15 Download gff for
BO08620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20929106..20929449 | 501..844 | 100 | <- | Minus |
arm_2R | 20935570..20935681 | 389..500 | 100 | <- | Minus |
arm_2R | 20938833..20939146 | 75..388 | 100 | <- | Minus |
arm_2R | 20939474..20939544 | 5..74 | 93 | | Minus |
BO08620.complete Sequence
1381 bp (1381 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631260
> BO08620.complete
GAAGTTATCAGTCGACATGGATATGTCCAGCGCGAACTCGTTGCGGCCCC
TTTTCGCAGGGTATCCCTTTCAAGGACAAGGCCGGGTAAATCAGCTTGGG
GGCGTCTTTATCAATGGACGTCCGTTGCCCAATCACATTCGACTGAAGAT
CGTGGAAATGGCGGCCAGTGGAGTGCGGCCTTGTGTAATATCGCGCCAGC
TCCGCGTGTCTCACGGCTGCGTATCGAAGATTCTGAACCGATACCAGGAG
ACGGGTTCTATTAGACCGGGCGTAATAGGTGGATCTAAGCCCAAGGTGAC
CTCTCCCGAAATTGAAACGCGGATCGATGAGCTGCGAAAGGAAAACCCCA
GCATATTCAGCTGGGAAATACGCGAAAAGCTGATAAAGGAGGGCTTTGCG
GATCCACCATCAACATCGTCGATCAGTCGCTTATTGCGGGGAAGCGATCG
CGGCAGCGAAGATGGTCGGAAGGACTATACCATAAATGGAATTCTTGGAG
GGCGAGACTCAGATATAAGTGACACGGAATCGGAGCCTGGGATTCCGCTG
AAACGCAAGCAGCGTCGCTCCCGCACCACCTTCACCGCCGAGCAGCTAGA
GGCACTCGAGCGAGCCTTTTCCCGCACCCAATACCCGGACGTCTACACCC
GGGAAGAGCTGGCTCAGACCACGGCCCTCACCGAAGCCCGTATCCAGGTA
TGGTTCTCCAACCGCAGGGCACGCCTTCGCAAGCACTCTGGCGGCTCAAA
CTCCGGGCTTTCGCCCATGAACAGTGGAAGCTCTAATGTGGGCGTGGGTG
TTGGGCTCAGTGGGGCGACAGCACCACTTGGCTACGGCCCTTTGGGAGTT
GGTTCGATGGCGGGCTACAGTCCTGCGCCGGGAACCACTGCCACTGGAGC
TGGGATGAACGACGGAGTTCACCACGCCGCACACGCACCAAGCTCCCACC
ACAGCGCAGCAACGGCTGCTGCAGCGGCACACCATCACACACAGATGGGT
GGCTACGATTTGGTCCAAAGTGCGGCTCAACACGGATTTCCCGGGGGCTT
TGCTCAGCCGGGACACTTTGGTAGTCAAAACTATTACCATCAAGACTATT
CCAAGCTGACCATTGACGACTTCTCAAAGCTCACCGCCGACAGTGTCTCA
AAGATCTCGCCCTCACTACACCTCAGCGACAACTACTCGAAGCTGGAGGC
TCCCTCAAACTGGTCACAGGCCGCCTACCACGCCGCCGCCAACTACAATG
CCCACGTAGCCCAGCACCAGCTCAATGACTATGCCGCTGCAGCGGCTCAC
GGGAACCCGGCCTCCGCCTACAGCCACCCCCTGCCGACGCAGGGTCAGGC
CAAGTACTGGTCAGCAAGCTTTCTAGACCAT
BO08620.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:33:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gsb-n-RA | 1350 | CG2692-PA | 1..1347 | 17..1363 | 6735 | 100 | Plus |
gsb-RA | 1284 | CG3388-PA | 43..263 | 62..282 | 460 | 80.5 | Plus |
prd-RB | 1842 | CG6716-PB | 94..296 | 89..291 | 370 | 78.8 | Plus |
gsb-RA | 1284 | CG3388-PA | 562..728 | 569..735 | 220 | 75.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:33:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gsb-n-RA | 2237 | CG2692-RA | 323..1670 | 16..1363 | 6740 | 100 | Plus |
gsb-RA | 1649 | CG3388-RA | 227..447 | 62..282 | 460 | 80.5 | Plus |
prd-RB | 2459 | CG6716-RB | 392..594 | 89..291 | 370 | 78.8 | Plus |
gsb-RA | 1649 | CG3388-RA | 746..912 | 569..735 | 220 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:33:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 25041333..25041928 | 1094..499 | 2980 | 100 | Minus |
2R | 25286936 | 2R | 25051309..25051625 | 389..73 | 1585 | 100 | Minus |
2R | 25286936 | 2R | 25040950..25041220 | 1363..1093 | 1355 | 100 | Minus |
2R | 25286936 | 2R | 25048046..25048160 | 501..387 | 575 | 100 | Minus |
2R | 25286936 | 2R | 25063228..25063441 | 69..282 | 410 | 79.4 | Plus |
2L | 23513712 | 2L | 12084860..12085062 | 291..89 | 370 | 78.8 | Minus |
2R | 25286936 | 2R | 25051950..25052009 | 75..16 | 300 | 100 | Minus |
2R | 25286936 | 2R | 25063740..25063906 | 569..735 | 220 | 75.4 | Plus |
2L | 23513712 | 2L | 12084344..12084530 | 735..549 | 185 | 73.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:33:35 has no hits.
BO08620.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:02 Download gff for
BO08620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gsb-n-RA | 1..1350 | 17..1366 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:56:33 Download gff for
BO08620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gsb-n-RA | 320..1666 | 17..1365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:38 Download gff for
BO08620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gsb-n-RA | 324..1670 | 17..1365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:03 Download gff for
BO08620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gsb-n-RA | 306..1666 | 5..1363 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:31 Download gff for
BO08620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gsb-n-RA | 324..1670 | 17..1365 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:31 Download gff for
BO08620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 25040947..25041218 | 1095..1365 | 99 | <- | Minus |
2R | 25041333..25041926 | 501..1094 | 100 | <- | Minus |
2R | 25048047..25048158 | 389..500 | 100 | <- | Minus |
2R | 25051310..25051623 | 75..388 | 100 | <- | Minus |
2R | 25051951..25052008 | 17..74 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:38 Download gff for
BO08620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20928470..20928741 | 1095..1365 | 99 | <- | Minus |
arm_2R | 20928856..20929449 | 501..1094 | 100 | <- | Minus |
arm_2R | 20935570..20935681 | 389..500 | 100 | <- | Minus |
arm_2R | 20938833..20939146 | 75..388 | 100 | <- | Minus |
arm_2R | 20939474..20939531 | 17..74 | 100 | | Minus |
BO08620.pep Sequence
Translation from 16 to 1381
> BO08620.pep
MDMSSANSLRPLFAGYPFQGQGRVNQLGGVFINGRPLPNHIRLKIVEMAA
SGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPKVTSPEIE
TRIDELRKENPSIFSWEIREKLIKEGFADPPSTSSISRLLRGSDRGSEDG
RKDYTINGILGGRDSDISDTESEPGIPLKRKQRRSRTTFTAEQLEALERA
FSRTQYPDVYTREELAQTTALTEARIQVWFSNRRARLRKHSGGSNSGLSP
MNSGSSNVGVGVGLSGATAPLGYGPLGVGSMAGYSPAPGTTATGAGMNDG
VHHAAHAPSSHHSAATAAAAAHHHTQMGGYDLVQSAAQHGFPGGFAQPGH
FGSQNYYHQDYSKLTIDDFSKLTADSVSKISPSLHLSDNYSKLEAPSNWS
QAAYHAAANYNAHVAQHQLNDYAAAAAHGNPASAYSHPLPTQGQAKYWSA
SFLDH
BO08620.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gsb-n-PA | 449 | CG2692-PA | 1..449 | 1..449 | 2351 | 100 | Plus |
gsb-PA | 427 | CG3388-PA | 4..328 | 5..310 | 892 | 58.3 | Plus |
prd-PB | 613 | CG6716-PB | 12..360 | 10..324 | 860 | 57 | Plus |
prd-PA | 590 | CG6716-PA | 4..337 | 20..324 | 850 | 58 | Plus |
Poxm-PC | 370 | CG9610-PC | 11..133 | 22..141 | 428 | 66.7 | Plus |