Clone BO08620 Report

Search the DGRC for BO08620

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:86
Well:20
Vector:pDNR-Dual
Associated Gene/Transcriptgsb-n-RA
Protein status:BO08620.pep: validated full length
Sequenced Size:1381

Clone Sequence Records

BO08620.3prime Sequence

918 bp (796 high quality bases) assembled on 2006-01-09

> BO08620.3prime
ATGGTCTAGAAAGCTTGCTGACCAGTACTTGGCCTGACCCTGCGTCGGCA
GGGGGTGGCTGTAGGCGGAGGCCGGGTTCCCGTGAGCCGCTGCAGCGGCA
TAGTCATTGAGCTGGTGCTGGGCTACGTGGGCATTGTAGTTGGCGGCGGC
GTGGTAGGCGGCCTGTGACCAGTTTGAGGGAGCCTCCAGCTTCGAGTAGT
TGTCGCTGAGGTGTAGTGAGGGCGAGATCTTTGAGACACTGTCGGCGGTG
AGCTTTGAGAAGTCGTCAATGGTCAGCTTGGAATAGTCTTGATGGTAATA
GTTTTGACTACCAAAGTGTCCCGGCTGAGCAAAGCCCCCGGGAAATCCGT
GTTGAGCCGCACTTTGGACCAAATCGTAGCCACCCATCTGTGTGTGATGG
TGTGCCGCTGCAGCAGCCGTTGCTGCGCTGTGGTGGGAGCTTGGTGCGTG
TGCGGCGTGGTGAACTCCGTCGTTCATCCCAGCTCCAGTGGCAGTGGTTC
CCGGCGCAGGACTGTAGCCCGCCATCGAACCAACTCCCAAAGGGCCGTAG
CCAAGTGGTGCTGTCGCCCCACTGAGCCCAACACCCACGCCCACATTAGA
GCTTCCACTGTTCATGGGCGAAAGCCCGGAGTTTGAGCCGCCAGAGTGCT
TGCGAAGGCGTGCCCTGCGGTTGGAGAACCATACCTGGATACGGGCTTCG
GTGAGGGCCGTGGTCTGAGCCAGCTCTTCCCGGGTGTAGACGTCCGGGTA
TTGGGTGCGGGAAAAGGCTCGCTCGAGTGCCTCTAGCTGCTCGGCGGTGA
AAGTGGTGCGGGAGCGACGCTGCTTGCGTTTCAGCGGAATCCCAGGCTCC
CGATTCCGTGTCACTTATATCTGAGTCTCGCCCTCCAAAATTCCATTTAT
GGTATAGTCCTTCCGACC

BO08620.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG2692-PA 1350 gsb-n-RA 516..1347 850..19 4135 99.8 Minus
CG2692-PA 1350 gsb-n-RA 479..517 888..850 195 100 Minus
CG2692-PA 1350 gsb-n-RA 448..477 918..889 150 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:24:45
Subject Length Description Subject Range Query Range Score Percent Strand
gsb-n-RA 2237 CG2692-RA 771..1670 918..19 4440 99.7 Minus
gsb-RA 1649 CG3388-RA 746..912 813..647 220 75.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:24:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 25041333..25041928 288..884 2920 99.7 Plus
2R 25286936 2R 25040950..25041220 19..289 1355 100 Plus
2R 25286936 2R 25063740..25063906 813..647 220 75.4 Minus
Blast to na_te.dros performed on 2015-02-10 23:24:43 has no hits.

BO08620.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:54 Download gff for BO08620.3prime
Subject Subject Range Query Range Percent Splice Strand
gsb-n-PA 448..1350 16..918 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:48:29 Download gff for BO08620.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2692-PA 448..1350 16..918 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:31:46 Download gff for BO08620.3prime
Subject Subject Range Query Range Percent Splice Strand
gsb-n-RA 771..1670 19..918 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:46:02 Download gff for BO08620.3prime
Subject Subject Range Query Range Percent Splice Strand
gsb-n-RA 771..1670 19..918 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:46:02 Download gff for BO08620.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 25040950..25041218 19..287 100 <- Plus
2R 25041333..25041926 288..882 99 <- Plus
2R 25048047..25048083 883..918 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:31:46 Download gff for BO08620.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20928473..20928741 19..287 100 <- Plus
arm_2R 20928856..20929449 288..882 99 <- Plus
arm_2R 20935570..20935606 883..918 97   Plus

BO08620.5prime Sequence

844 bp (799 high quality bases) assembled on 2006-01-09

> BO08620.5prime
GAAGTTATCAGTCGACATGGATATGTCCAGCGCGAACTCGTTGCGGCCCC
TTTTCGCAGGGTATCCCTTTCAAGGACAAGGCCGGGTAAATCAGCTTGGG
GGCGTCTTTATCAATGGACGTCCGTTGCCCAATCACATTCGACTGAAGAT
CGTGGAAATGGCGGCCAGTGGAGTGCGGCCTTGTGTAATATCGCGCCAGC
TCCGCGTGTCTCACGGCTGCGTATCGAAGATTCTGAACCGATACCAGGAG
ACGGGTTCTATTAGACCGGGCGTAATAGGTGGATCTAAGCCCAAGGTGAC
CTCTCCCGAAATTGAAACGCGGATCGATGAGCTGCGAAAGGAAAACCCCA
GCATATTCAGCTGGGAAATACGCGAAAAGCTGATAAAGGAGGGCTTTGCG
GATCCACCATCAACATCGTCGATCAGTCGCTTATTGCGGGGAAGCGATCG
CGGCAGCGAAGATGGTCGGAAGGACTATACCATAAATGGAATTCTTGGAG
GGCGAGACTCAGATATAAGTGACACGGAATCGGAGCCTGGGATTCCGCTG
AAACGCAAGCAGCGTCGCTCCCGCACCACCTTCACCGCCGAGCAGCTAGA
GGCACTCGAGCGAGCCTTTTCCCGCACCCAATACCCGGACGTCTACACCC
GGGAAGAGCTGGCTCAGACCACGGCCCTCACCGAAGCCCGTATCCAGGTA
TGGTTCTCCAACCGCAGGGCACGCCTTCGCAAGCACTCTGGCGGCTCAAA
CTCCGGGCTTTCGCCCATGAACAGTGGAAGCTCTAATGTGGGCGTGGGTG
TTGGGCTCAGTGGGGCGACAGCACCACTTGGCTACGGCCCTTTG

BO08620.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG2692-PA 1350 gsb-n-RA 1..828 17..844 4140 100 Plus
CG6716-PA 1773 prd-RA 151..218 215..282 140 88.2 Plus
CG6716-PB 1842 prd-RB 220..287 215..282 140 88.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:03:52
Subject Length Description Subject Range Query Range Score Percent Strand
gsb-n-RA 2237 CG2692-RA 323..1151 16..844 4145 100 Plus
gsb-RA 1649 CG3388-RA 227..447 62..282 460 81.6 Plus
prd-RB 2459 CG6716-RB 392..594 89..291 370 78.8 Plus
gsb-RA 1649 CG3388-RA 746..912 569..735 220 75.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:03:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 25041583..25041928 844..499 1730 100 Minus
2R 25286936 2R 25051309..25051625 389..73 1585 100 Minus
2R 25286936 2R 25048046..25048160 501..387 575 100 Minus
2R 25286936 2R 25063228..25063441 69..282 410 79.4 Plus
2L 23513712 2L 12084860..12085062 291..89 370 78.8 Minus
2R 25286936 2R 25051950..25052009 75..16 300 100 Minus
2R 25286936 2R 25063740..25063906 569..735 220 75.4 Plus
2L 23513712 2L 12084344..12084530 735..549 185 73.3 Minus
Blast to na_te.dros performed on 2015-02-11 11:03:50 has no hits.

BO08620.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:55 Download gff for BO08620.5prime
Subject Subject Range Query Range Percent Splice Strand
gsb-n-PA 1..828 17..844 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:48:30 Download gff for BO08620.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2692-PA 1..828 17..844 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:13:15 Download gff for BO08620.5prime
Subject Subject Range Query Range Percent Splice Strand
gsb-n-RA 310..1151 5..844 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:44:56 Download gff for BO08620.5prime
Subject Subject Range Query Range Percent Splice Strand
gsb-n-RA 310..1151 5..844 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:44:56 Download gff for BO08620.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 25041583..25041926 501..844 100 <- Minus
2R 25048047..25048158 389..500 100 <- Minus
2R 25051310..25051623 75..388 100 <- Minus
2R 25051951..25052021 5..74 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:13:15 Download gff for BO08620.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20929106..20929449 501..844 100 <- Minus
arm_2R 20935570..20935681 389..500 100 <- Minus
arm_2R 20938833..20939146 75..388 100 <- Minus
arm_2R 20939474..20939544 5..74 93   Minus

BO08620.complete Sequence

1381 bp (1381 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ631260

> BO08620.complete
GAAGTTATCAGTCGACATGGATATGTCCAGCGCGAACTCGTTGCGGCCCC
TTTTCGCAGGGTATCCCTTTCAAGGACAAGGCCGGGTAAATCAGCTTGGG
GGCGTCTTTATCAATGGACGTCCGTTGCCCAATCACATTCGACTGAAGAT
CGTGGAAATGGCGGCCAGTGGAGTGCGGCCTTGTGTAATATCGCGCCAGC
TCCGCGTGTCTCACGGCTGCGTATCGAAGATTCTGAACCGATACCAGGAG
ACGGGTTCTATTAGACCGGGCGTAATAGGTGGATCTAAGCCCAAGGTGAC
CTCTCCCGAAATTGAAACGCGGATCGATGAGCTGCGAAAGGAAAACCCCA
GCATATTCAGCTGGGAAATACGCGAAAAGCTGATAAAGGAGGGCTTTGCG
GATCCACCATCAACATCGTCGATCAGTCGCTTATTGCGGGGAAGCGATCG
CGGCAGCGAAGATGGTCGGAAGGACTATACCATAAATGGAATTCTTGGAG
GGCGAGACTCAGATATAAGTGACACGGAATCGGAGCCTGGGATTCCGCTG
AAACGCAAGCAGCGTCGCTCCCGCACCACCTTCACCGCCGAGCAGCTAGA
GGCACTCGAGCGAGCCTTTTCCCGCACCCAATACCCGGACGTCTACACCC
GGGAAGAGCTGGCTCAGACCACGGCCCTCACCGAAGCCCGTATCCAGGTA
TGGTTCTCCAACCGCAGGGCACGCCTTCGCAAGCACTCTGGCGGCTCAAA
CTCCGGGCTTTCGCCCATGAACAGTGGAAGCTCTAATGTGGGCGTGGGTG
TTGGGCTCAGTGGGGCGACAGCACCACTTGGCTACGGCCCTTTGGGAGTT
GGTTCGATGGCGGGCTACAGTCCTGCGCCGGGAACCACTGCCACTGGAGC
TGGGATGAACGACGGAGTTCACCACGCCGCACACGCACCAAGCTCCCACC
ACAGCGCAGCAACGGCTGCTGCAGCGGCACACCATCACACACAGATGGGT
GGCTACGATTTGGTCCAAAGTGCGGCTCAACACGGATTTCCCGGGGGCTT
TGCTCAGCCGGGACACTTTGGTAGTCAAAACTATTACCATCAAGACTATT
CCAAGCTGACCATTGACGACTTCTCAAAGCTCACCGCCGACAGTGTCTCA
AAGATCTCGCCCTCACTACACCTCAGCGACAACTACTCGAAGCTGGAGGC
TCCCTCAAACTGGTCACAGGCCGCCTACCACGCCGCCGCCAACTACAATG
CCCACGTAGCCCAGCACCAGCTCAATGACTATGCCGCTGCAGCGGCTCAC
GGGAACCCGGCCTCCGCCTACAGCCACCCCCTGCCGACGCAGGGTCAGGC
CAAGTACTGGTCAGCAAGCTTTCTAGACCAT

BO08620.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:33:36
Subject Length Description Subject Range Query Range Score Percent Strand
gsb-n-RA 1350 CG2692-PA 1..1347 17..1363 6735 100 Plus
gsb-RA 1284 CG3388-PA 43..263 62..282 460 80.5 Plus
prd-RB 1842 CG6716-PB 94..296 89..291 370 78.8 Plus
gsb-RA 1284 CG3388-PA 562..728 569..735 220 75.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:33:38
Subject Length Description Subject Range Query Range Score Percent Strand
gsb-n-RA 2237 CG2692-RA 323..1670 16..1363 6740 100 Plus
gsb-RA 1649 CG3388-RA 227..447 62..282 460 80.5 Plus
prd-RB 2459 CG6716-RB 392..594 89..291 370 78.8 Plus
gsb-RA 1649 CG3388-RA 746..912 569..735 220 75.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:33:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 25041333..25041928 1094..499 2980 100 Minus
2R 25286936 2R 25051309..25051625 389..73 1585 100 Minus
2R 25286936 2R 25040950..25041220 1363..1093 1355 100 Minus
2R 25286936 2R 25048046..25048160 501..387 575 100 Minus
2R 25286936 2R 25063228..25063441 69..282 410 79.4 Plus
2L 23513712 2L 12084860..12085062 291..89 370 78.8 Minus
2R 25286936 2R 25051950..25052009 75..16 300 100 Minus
2R 25286936 2R 25063740..25063906 569..735 220 75.4 Plus
2L 23513712 2L 12084344..12084530 735..549 185 73.3 Minus
Blast to na_te.dros performed on 2014-11-28 08:33:35 has no hits.

BO08620.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:02 Download gff for BO08620.complete
Subject Subject Range Query Range Percent Splice Strand
gsb-n-RA 1..1350 17..1366 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:56:33 Download gff for BO08620.complete
Subject Subject Range Query Range Percent Splice Strand
gsb-n-RA 320..1666 17..1365 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:38 Download gff for BO08620.complete
Subject Subject Range Query Range Percent Splice Strand
gsb-n-RA 324..1670 17..1365 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:03 Download gff for BO08620.complete
Subject Subject Range Query Range Percent Splice Strand
gsb-n-RA 306..1666 5..1363 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:31 Download gff for BO08620.complete
Subject Subject Range Query Range Percent Splice Strand
gsb-n-RA 324..1670 17..1365 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:31 Download gff for BO08620.complete
Subject Subject Range Query Range Percent Splice Strand
2R 25040947..25041218 1095..1365 99 <- Minus
2R 25041333..25041926 501..1094 100 <- Minus
2R 25048047..25048158 389..500 100 <- Minus
2R 25051310..25051623 75..388 100 <- Minus
2R 25051951..25052008 17..74 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:38 Download gff for BO08620.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20928470..20928741 1095..1365 99 <- Minus
arm_2R 20928856..20929449 501..1094 100 <- Minus
arm_2R 20935570..20935681 389..500 100 <- Minus
arm_2R 20938833..20939146 75..388 100 <- Minus
arm_2R 20939474..20939531 17..74 100   Minus

BO08620.pep Sequence

Translation from 16 to 1381

> BO08620.pep
MDMSSANSLRPLFAGYPFQGQGRVNQLGGVFINGRPLPNHIRLKIVEMAA
SGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPKVTSPEIE
TRIDELRKENPSIFSWEIREKLIKEGFADPPSTSSISRLLRGSDRGSEDG
RKDYTINGILGGRDSDISDTESEPGIPLKRKQRRSRTTFTAEQLEALERA
FSRTQYPDVYTREELAQTTALTEARIQVWFSNRRARLRKHSGGSNSGLSP
MNSGSSNVGVGVGLSGATAPLGYGPLGVGSMAGYSPAPGTTATGAGMNDG
VHHAAHAPSSHHSAATAAAAAHHHTQMGGYDLVQSAAQHGFPGGFAQPGH
FGSQNYYHQDYSKLTIDDFSKLTADSVSKISPSLHLSDNYSKLEAPSNWS
QAAYHAAANYNAHVAQHQLNDYAAAAAHGNPASAYSHPLPTQGQAKYWSA
SFLDH

BO08620.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:42
Subject Length Description Subject Range Query Range Score Percent Strand
gsb-n-PA 449 CG2692-PA 1..449 1..449 2351 100 Plus
gsb-PA 427 CG3388-PA 4..328 5..310 892 58.3 Plus
prd-PB 613 CG6716-PB 12..360 10..324 860 57 Plus
prd-PA 590 CG6716-PA 4..337 20..324 850 58 Plus
Poxm-PC 370 CG9610-PC 11..133 22..141 428 66.7 Plus