Clone Sequence Records
BO08637.5prime Sequence
564 bp (563 high quality bases) assembled on 2006-01-09
> BO08637.5prime
GAAGTTATCAGTCGACATGAGAGTTATGAGAGAGAAAGACCACTCACCAA
GAAAGATGCTTCCTAGCCCGAAACAGGGCTGCGTATACCCTGCCTTAGGA
TTAATACCCACATCGTATATATCACACGTACCTTATGATCTGGCCTCCTC
AGCGTCGGTGGCGGCCACATCCTCGTCATCAACGTCGCCGACGACGACGT
CGGCAACGACAACTGGGCGGCTGCAGCACCAACACTCCCACCAGCAACAC
CAGACCTTAAATCACCATGCCAAGGGCAAGCGGAGAAGCAGTTTCGATCA
GCCGTTGGATCTGCGGTTGGCACACAAGCGGAAAACGGACCTGGTGGATC
AAGGACCCATGGAGGATGAGAACAGCAACCTGATCATGTTCGCCAGTGAA
CTGGCGGTGGCTCAGCAAAAGGAGAAGGAGCTGAACAACAACCATATCGC
AGCATCGCTGGCCGACCTGGGCTTTGATATGAGCCGCAAAATGCTGAGGG
CCTTGAGAGAGGGTGGTGCAGGTGGCGGTGGCGGAGGAGGAGGAGGAGGA
AGGAGGCGGGGGTG
BO08637.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:28:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10348-PA | 1593 | CG10348-RA | 1..495 | 56..550 | 2475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:26:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10348-RB | 2611 | CG10348-RB | 765..1311 | 17..564 | 2700 | 99.6 | Plus |
| CG10348-RC | 3878 | CG10348-RC | 1870..2416 | 17..564 | 2700 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:26:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18715915..18716461 | 564..17 | 2675 | 99.6 | Minus |
Blast to na_te.dros performed 2015-02-11 23:26:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6892 | 162..279 | 146 | 60.5 | Plus |
BO08637.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:52:13 Download gff for
BO08637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10348-PA | 1..508 | 56..564 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:48:55 Download gff for
BO08637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10348-PA | 1..508 | 56..564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:54:10 Download gff for
BO08637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10348-RC | 1861..2416 | 8..564 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:50:47 Download gff for
BO08637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10348-RC | 1861..2416 | 8..564 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:50:47 Download gff for
BO08637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18715915..18716470 | 8..564 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:54:10 Download gff for
BO08637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18715915..18716470 | 8..564 | 98 | | Minus |
BO08637.3prime Sequence
879 bp (767 high quality bases) assembled on 2006-01-09
> BO08637.3prime
ATGGTCTAGAAAGCTTGCGGGTACCTCTTCCTTGATAGATGTTGTTTGGG
GCGTCGTCATCGCGCTGTCTGCGGTAGTGGTGGGGAAGAGCTTGGAGGTA
AGGGTCCTCTTGAGCTCCATGATCGGCTGCGAATCCTCCTCCTCTTGGTC
TCTGCTGGACGATGGTGCTGCCGTGTCAGCCGTCGATGTTGCCGGCGCAT
GGTCCGCCTCCTCGTGCGAGGATGTGGGCGTGTCCCGCGACGAGGAGCAC
GAACTGGACGCCGATGTTGCGGTTGACTGATGCTGTTGCTGCTGTTGGTC
GTGCTGCTGCTGTTGCTGCTGCTGCTGCTGTTGCTGCGTGACCTTGCCCA
TGAAGCTGCGTATCTCCTCGAAATAGGATTCCTCAGTAGGATTCTCGCAG
AATCTGCGTATGCAGTGCATCCTTTCGCTCACGCCCGACAAGGCACTCAA
GGACACCGCATCCGACTCGTGCTTCTTGAGGTGCCTGTCCAGATTCGTCT
GTTGGCCAAAGCATCTCTCGCATATCTCACACTTGAAGGGTCGCTCCTTG
TTGTGGATATTCCGCACATGGCGCTGCAGATTCGAGGATATGCTAAAGGA
ACGTTCGCAGTATTTGCATTTGTAGGGCTGCTCGCCCGTGTGCGTTCGCA
GATGCCGCGTCAGGTTCGCCGATCTCGGANAGACTTTTCCGCAAAACTTG
CAGGTGTAGCGATCCTTGTTGCGTTGCGGCAAGTTTGGCGTGGCATTGCC
CCCGGTGGCAGCTGTTCTGGCCTTGTTTTTCCTCCGCGTCTGATAGTCCT
GCAGTTGCGGATGCGGCAGGACCGGCGACAACTTCGGGTTCGGATGAGGC
AGCTCCAGTTGCAATTGCTCTGTGGGCGG
BO08637.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:28:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10348-PA | 1593 | CG10348-RA | 730..1590 | 879..19 | 4286 | 99.8 | Minus |
| CG31753-PA | 3327 | ham-RA | 2920..2969 | 591..542 | 175 | 94 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:52:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10348-RB | 2611 | CG10348-RB | 1533..2393 | 879..19 | 4294 | 99.9 | Minus |
| CG10348-RC | 3878 | CG10348-RC | 2638..3498 | 879..19 | 4294 | 99.9 | Minus |
| ham-RF | 4111 | CG31753-RF | 2958..3214 | 717..461 | 599 | 82.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:52:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18714833..18715693 | 19..879 | 4294 | 99.9 | Plus |
| 2L | 23513712 | 2L | 18763771..18764027 | 461..717 | 599 | 82.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:52:38 has no hits.
BO08637.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:52:13 Download gff for
BO08637.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10348-PA | 730..1593 | 15..879 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:48:53 Download gff for
BO08637.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10348-PA | 730..1593 | 15..879 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:34:01 Download gff for
BO08637.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10348-RC | 2638..3503 | 12..879 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:59:12 Download gff for
BO08637.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10348-RC | 2638..3503 | 12..879 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:59:12 Download gff for
BO08637.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18714828..18715693 | 12..879 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:34:01 Download gff for
BO08637.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18714828..18715693 | 12..879 | 99 | | Plus |
BO08637.complete Sequence
1663 bp assembled on 2010-03-01
> BO08637.complete
GAAGTTATCAGTCGACATGAGAGTTATGAGAGAGAAAGACCACTCACCAA
GAAAGATGCTTCCTAGCCCGAAACAGGGCTGCGTATACCCTGCCTTAGGA
TTAATACCCACATCGTATATATCACACGTACCTTATGATCTGGCCTCCTC
AGCGTCGGTGGCGGCCACATCCTCGTCATCAACGTCGCCGACGACGACGT
CGGCAACGACAACTGGGCGGCTGCAGCACCAACACTCCCACCAGCAACAC
CAGACCTTAAATCACCATGCCAAGGGCAAGCGGAGAAGCAGTTTCGATCA
GCCGTTGGATCTGCGGTTGGCACACAAGCGGAAAACGGACCTGGTGGATC
AAGGACCCATGGAGGATGAGAACAGCAACCTGATCATGTTCGCCAGTGAA
CTGGCGGTGGCTCAGCAAAAGGAGAAGGAGCTGAACAACAACCATATCGC
AGCATCGCTGGCCGACCTGGGCTTTGATATGAGCCGCAAAATGCTGAGGG
CCTTGAGAGAGGGTGGTGCAGGTGGCGGTGGCGGAGGAGGAGGAGGAGGA
GGAGGCGGTGGTGGACCACCCAACGCACCGCCCTTAACACCACCGCAATG
TTCGATACCTGCCGTACATCCCACACTCCTAGAAGCCATGACCAAGAACT
TGCCCTTGCAGTATCGCAATGTGTTCGCTGGGGTTTTGCCGGGCAAGGTG
AACAGTCCGGCGGCCTCCAGTAGTCCAACGGGCGCGGATTTCCCGTTCCG
GCATCCGCTCAAGAAATGCGAGCTCACCTGGCCACCGCCCACAGAGCAAT
TGCAACTGGAGCTGCCTCATCCGAACCCGAAGTTGTCGCCGGTCCTGCCG
CATCCGCAACTGCAGGACTATCAGACGCGGAGGAAAAACAAGGCCAGAAC
AGCTGCCACCGGGGGCAATGCCACGCCAAACTTGCCGCAACGCAACAAGG
ATCGCTACACCTGCAAGTTTTGCGGAAAAGTCTTTCCGAGATCGGCGAAC
CTGACGCGGCATCTGCGAACGCACACGGGCGAGCAGCCCTACAAATGCAA
ATACTGCGAACGTTCCTTTAGCATATCCTCGAATCTGCAGCGCCATGTGC
GGAATATCCACAACAAGGAGCGACCCTTCAAGTGTGAGATATGCGAGAGA
TGCTTTGGCCAACAGACGAATCTGGACAGGCACCTCAAGAAGCACGAGTC
GGATGCGGTGTCCTTGAGTGCCTTGTCGGGCGTGAGCGAAAGGATGCACT
GCATACGCAGATTCTGCGAGAATCCTACTGAGGAATCCTATTTCGAGGAG
ATACGCAGCTTCATGGGCAAGGTCACGCAGCAACAGCAGCAGCAGCAGCA
ACAGCAGCAGCACGACCAACAGCAGCAACAGCATCAGTCAACCGCAACAT
CGGCGTCCAGTTCGTGCTCCTCGTCGCGGGACACGCCCACATCCTCGCAC
GAGGAGGCGGACCATGCGCCGGCAACATCGACGGCTGACACGGCAGCACC
ATCGTCCAGCAGAGACCAAGAGGAGGAGGATTCGCAGCCGATCATGGAGC
TCAAGAGGACCCTTACCTCCAAGCTCTTCCCCACCACTACCGCAGACAGC
GCGATGACGACGCCCCAAACAACATCTATCAAGGAAGAGGTACCCGCAAG
CTTTCTAGACCAT
BO08637.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:02:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10348-RB | 1623 | CG10348-PB | 1..1620 | 26..1645 | 8100 | 100 | Plus |
| CG10348-RC | 1623 | CG10348-PC | 1..1620 | 26..1645 | 8100 | 100 | Plus |
| ham-RF | 2841 | CG31753-PF | 2308..2564 | 947..1203 | 610 | 82.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10348-RB | 2611 | CG10348-RB | 765..2393 | 17..1645 | 8145 | 100 | Plus |
| CG10348-RC | 3878 | CG10348-RC | 1870..3498 | 17..1645 | 8145 | 100 | Plus |
| ham-RF | 4111 | CG31753-RF | 2958..3214 | 947..1203 | 610 | 82.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18714833..18716461 | 1645..17 | 8145 | 100 | Minus |
| 2L | 23513712 | 2L | 18763771..18764027 | 1203..947 | 610 | 82.5 | Minus |
Blast to na_te.dros performed 2014-11-27 01:02:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6892 | 162..279 | 146 | 60.5 | Plus |
BO08637.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-03-01 16:43:33 Download gff for
BO08637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10348-RA | 1..1590 | 56..1647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:43:12 Download gff for
BO08637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10348-RC | 1870..3498 | 17..1647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:17:07 Download gff for
BO08637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10348-RC | 1870..3498 | 17..1647 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:17:07 Download gff for
BO08637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18714831..18716461 | 17..1647 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:43:12 Download gff for
BO08637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18714831..18716461 | 17..1647 | 99 | | Minus |
BO08637.pep Sequence
Translation from 16 to 1663
> BO08637.pep
MRVMREKDHSPRKMLPSPKQGCVYPALGLIPTSYISHVPYDLASSASVAA
TSSSSTSPTTTSATTTGRLQHQHSHQQHQTLNHHAKGKRRSSFDQPLDLR
LAHKRKTDLVDQGPMEDENSNLIMFASELAVAQQKEKELNNNHIAASLAD
LGFDMSRKMLRALREGGAGGGGGGGGGGGGGGGPPNAPPLTPPQCSIPAV
HPTLLEAMTKNLPLQYRNVFAGVLPGKVNSPAASSSPTGADFPFRHPLKK
CELTWPPPTEQLQLELPHPNPKLSPVLPHPQLQDYQTRRKNKARTAATGG
NATPNLPQRNKDRYTCKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERS
FSISSNLQRHVRNIHNKERPFKCEICERCFGQQTNLDRHLKKHESDAVSL
SALSGVSERMHCIRRFCENPTEESYFEEIRSFMGKVTQQQQQQQQQQQHD
QQQQQHQSTATSASSSCSSSRDTPTSSHEEADHAPATSTADTAAPSSSRD
QEEEDSQPIMELKRTLTSKLFPTTTADSAMTTPQTTSIKEEVPASFLDH
BO08637.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:23:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10348-PB | 540 | CG10348-PB | 1..540 | 4..543 | 2865 | 100 | Plus |
| CG10348-PC | 540 | CG10348-PC | 1..540 | 4..543 | 2865 | 100 | Plus |
| ham-PE | 633 | CG31753-PE | 392..572 | 266..436 | 482 | 52.6 | Plus |
| ham-PF | 946 | CG31753-PF | 705..885 | 266..436 | 482 | 52.6 | Plus |
| ham-PD | 990 | CG31753-PD | 749..929 | 266..436 | 482 | 52.6 | Plus |
| ham-PF | 946 | CG31753-PF | 228..408 | 306..495 | 213 | 28 | Plus |
