Clone Sequence Records
BO08640.complete Sequence
1134 bp assembled on 2010-04-12
> BO08640.complete
GAAGTTATCAGTCGACATGGCGCTATGCCAGACATCGGTGCTGAAGGTGT
ACCATGCCGTGATCGAGGACGTCATCACAAATGTGCGGGACGCGTTCCTG
GACGAGGGCGTCGACGAACAGGTGCTGCAGGAGATGAAGCAGGTCTGGCG
CAACAAGTTGCTTGCTAGCAAGGCCGTCGAGCTGAGCCCGGACTCCGGCG
ATGGCTCCCATCCGCCACCCATCGTGGCCAACAATCCAAAGAGCCACAAG
GCAGCGAATGCCAAGGCCAAGAAGGCCGCCGCCGCAACCGCGGTCACATC
ACACCAACATATCGGCGGCAACAGCTCCATGTCCTCGCTGGTGGGGCTTA
AGTCGTCCGCTGGAATGGCCGCCGGCAGCGGCATAAGGAACGGGCTGGTG
CCCATCAAGCAGGAAGTCAACTCACAGAATCCACCGCCACTGCATCCTAC
CTCGGCTGCAAGCATGATGCAGAAACAGCAGCAGGCGGCGAGCAGTGGAC
AGGGTTCCATTCCAATTGTGGCCACGCTGGACCCCAATCGCATTATGCCT
GTTAACATCACGCTGCCATCGCCAGCCGGCTCTGCCAGTTCGGAATCTCG
AGTGCTCACCATACAAGTGCCTGCCTCCGCGCTGCAGGAGAATCAGTTGA
CCCAAATTCTGACGGCCCACCTGATTTCATCCATCATGTCCTTGCCCACC
ACGTTGGCCTCGTCTGTGCTTCAGCAGCACGTAAACGCAGCGCTAAGCAG
CGCCAATCACCAGAAAACTCTTGCCGCCGCCAAGCAATTGGACGGTGCCC
TGGACTCCTCCGATGAGGATGAAAGCGAGGAGAGCGACGACAACATCGAC
AACGATGACGACGATGACCTAGACAAGGACGATGACGAGGATGCGGAGCA
CGAGGATGCTGCCGAGGAGGAGCCGCTCAACAGCGAAGACGATGTCACCG
ACGAAGACTCTGCCGAAATGTTTGACACAGATAACGTGATTGTTTGTCAG
TACGATAAGATCACCAGGTCGCGAAACAAATGGAAATTCTATCTCAAAGA
TGGCATCATGAACATGCGGGGCAAGGACTACGTGTTCCAGAAATCGAATG
GCGACGCCGAGTGGTAGCAAGCTTTCTAGACCAT
BO08640.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:51:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIA-L-RA | 1101 | CG5930-PA | 1..1100 | 17..1116 | 5500 | 100 | Plus |
TfIIA-L-RB | 1092 | CG5930-PB | 1..1091 | 17..1116 | 5330 | 99.2 | Plus |
TfIIA-L-RC | 975 | CG5930-PC | 1..974 | 134..1116 | 4745 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIA-L-RA | 1595 | CG5930-RA | 173..1272 | 17..1116 | 5500 | 100 | Plus |
TfIIA-L-RB | 1586 | CG5930-RB | 173..1263 | 17..1116 | 5330 | 99.2 | Plus |
TfIIA-L-RC | 1440 | CG5930-RC | 50..1117 | 40..1116 | 5215 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27255088..27255395 | 249..556 | 1540 | 100 | Plus |
3R | 32079331 | 3R | 27255726..27255970 | 765..1009 | 1225 | 100 | Plus |
3R | 32079331 | 3R | 27255456..27255663 | 557..764 | 1040 | 100 | Plus |
3R | 32079331 | 3R | 27254527..27254728 | 40..241 | 1010 | 100 | Plus |
3R | 32079331 | 3R | 27256032..27256140 | 1008..1116 | 545 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 07:51:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 5723..5805 | 801..886 | 116 | 62.8 | Plus |
BO08640.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:25:18 Download gff for
BO08640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIA-L-RA | 173..1272 | 17..1118 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:48 Download gff for
BO08640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIA-L-RA | 173..1272 | 17..1118 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:09 Download gff for
BO08640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIA-L-RA | 173..1272 | 17..1118 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:09 Download gff for
BO08640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27255084..27255395 | 244..556 | 98 | -> | Plus |
3R | 27255456..27255663 | 557..764 | 100 | -> | Plus |
3R | 27255726..27255970 | 765..1009 | 100 | -> | Plus |
3R | 27256034..27256140 | 1010..1118 | 98 | | Plus |
3R | 27253602..27253625 | 17..40 | 100 | -> | Plus |
3R | 27254528..27254728 | 41..243 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:48 Download gff for
BO08640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23079324..23079347 | 17..40 | 100 | -> | Plus |
arm_3R | 23080806..23081117 | 244..556 | 98 | -> | Plus |
arm_3R | 23080250..23080450 | 41..243 | 99 | -> | Plus |
arm_3R | 23081178..23081385 | 557..764 | 100 | -> | Plus |
arm_3R | 23081448..23081692 | 765..1009 | 100 | -> | Plus |
arm_3R | 23081756..23081862 | 1010..1118 | 98 | | Plus |
BO08640.3prime Sequence
892 bp (856 high quality bases) assembled on 2006-01-09
> BO08640.3prime
ATGGTCTAGAAAGCTTGCTACCACTCGGCGTCGCCATTCGATTTCTGGAA
CACGTAGTCCTTGCCCCGCATGTTCATGATGCCATCTTTGAGATAGAATT
TCCATTTGTTTCGCGACCTGGTGATCTTATCGTACTGACAAACAATCACG
TTATCTGTGTCAAACATTTCGGCAGAGTCTTCGTCGGTGACATCGTCTTC
GCTGTTGAGCGGCTCCTCCTCGGCAGCATCCTCGTGCTCCGCATCCTCGT
CATCGTCCTTGTCTAGGTCATCGTCGTCATCGTTGTCGATGTTGTCGTCG
CTCTCCTCGCTTTCATCCTCATCGGAGGAGTCCAGGGCACCGTCCAATTG
CTTGGCGGCGGCAAGAGTTTTCTGGTGATTGGCGCTGCTTAGCGCTGCGT
TTACGTGCTGCTGAAGCACAGACGAGGCCAACGTGGTGGGCAAGGACATG
ATGGATGAAATCAGGTGGGCCGTCAGAATTTGGGTCAACTGATTCTCCTG
CAGCGCGGAGGCAGGCACTTGTATGGTGAGCACTCGAGATTCCGAACTGG
CAGAGCCGGCTGGCGATGGCAGCGTGATGTTAACAGGCATAATGCGATTG
GGGTCCAGCGTGGCCACAATTGGAATGGAACCCTGTCCACTGCTCGCCGC
CTGCTGCTGTTTCTGCATCATGCTTGCAGCCGAGGTAGGATGCAGTGGCG
GTGGATTCTGTGAGTTGACTTCCTGCTTGATGGGCACCAGCCCGTTCCTT
ATGCCGCTGCCGGCGGCCATTCCAGCGGACGACTTAAGCCCCACCAGCGA
GGACATGGAGCTGTTGCCGCCGATATGTTGGTGTGATGTGACCGCGGTTG
CGGCGGCGGCCTTCTTGGCCTTGGCATTCGCTGCCTTGTGGC
BO08640.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:28:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5930-PA | 1101 | TfIIA-L-RA | 227..1100 | 892..19 | 4370 | 100 | Minus |
CG5930-PC | 975 | TfIIA-L-RC | 106..974 | 887..19 | 4345 | 100 | Minus |
CG5930-PB | 1092 | TfIIA-L-RB | 223..1091 | 887..19 | 4345 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:02:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIA-L-RA | 1595 | CG5930-RA | 399..1272 | 892..19 | 4370 | 100 | Minus |
TfIIA-L-RB | 1586 | CG5930-RB | 395..1263 | 887..19 | 4345 | 100 | Minus |
TfIIA-L-RC | 1440 | CG5930-RC | 249..1117 | 887..19 | 4345 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:01:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27255088..27255395 | 886..579 | 1540 | 100 | Minus |
3R | 32079331 | 3R | 27255726..27255970 | 370..126 | 1225 | 100 | Minus |
3R | 32079331 | 3R | 27255456..27255663 | 578..371 | 1040 | 100 | Minus |
3R | 32079331 | 3R | 27256032..27256140 | 127..19 | 545 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 00:02:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 556..611 | 338..280 | 135 | 72.9 | Minus |
Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 5723..5805 | 334..249 | 116 | 62.8 | Minus |
BO08640.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:52:18 Download gff for
BO08640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5930-PA | 227..1101 | 18..892 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:49:02 Download gff for
BO08640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5930-PA | 227..1101 | 18..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:39:45 Download gff for
BO08640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIA-L-RA | 399..1272 | 19..892 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:34 Download gff for
BO08640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIA-L-RA | 399..1272 | 19..892 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:34 Download gff for
BO08640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27255088..27255395 | 579..886 | 100 | -> | Minus |
3R | 27255456..27255663 | 371..578 | 100 | -> | Minus |
3R | 27255726..27255970 | 126..370 | 100 | -> | Minus |
3R | 27256034..27256140 | 19..125 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:39:45 Download gff for
BO08640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23080810..23081117 | 579..886 | 100 | -> | Minus |
arm_3R | 23081178..23081385 | 371..578 | 100 | -> | Minus |
arm_3R | 23081448..23081692 | 126..370 | 100 | -> | Minus |
arm_3R | 23081756..23081862 | 19..125 | 100 | | Minus |
BO08640.5prime Sequence
743 bp (732 high quality bases) assembled on 2006-01-09
> BO08640.5prime
GAAGTTATCAGTCGACATGGCGCTATGCCAGACATCGCTGCTGAAGGTGT
ACCATGCCGTGATCGAGGACGTCATCACAAATGTGCGGGACGCGTTCCTG
GACGAGGGCGTCGACGAACAGGTGCTGCAGGAGATGAAGCAGGTCTGGCG
CAACAAGTTGCTTGCTAGCAAGGCCGTCGAGCTGAGCCCGGACTCCGGCG
ATGGCTCCCATCCGCCACCCATCGTGGCCAACAATCCAAAGAGCCACAAG
GCAGCGAATGCCAAGGCCAAGAAGGCCGCCGCCGCAACCGCGGTCACATC
ACACCAACATATCGGCGGCAACAGCTCCATGTCCTCGCTGGTGGGGCTTA
AGTCGTCCGCTGGAATGGCCGCCGGCAGCGGCATAAGGAACGGGCTGGTG
CCCATCAAGCAGGAAGTCAACTCACAGAATCCACCGCCACTGCATCCTAC
CTCGGCTGCAAGCATGATGCAGAAACAGCAGCAGGCGGCGAGCAGTGGAC
AGGGTTCCATTCCAATTGTGGCCACGCTGGACCCCAATCGCATTATGCCT
GTTAACATCACGCTGCCATCGCCAGCCGGCTCTGCCAGTTCGGAATCTCG
AGTGCTCACCATACAAGTGCCTGCCTCCGCGCTGCAGGAGAATCAGTTGA
CCCAAATTCTGACGGCCCACCTGATTTCATCCATCATGTCCTTGCCCCCC
ACGTTGGCCTCGTCTGTGCTTCAGCAGCACGTAAACCCAGCGC
BO08640.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:28:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5930-PA | 1101 | TfIIA-L-RA | 1..727 | 17..743 | 3560 | 99.5 | Plus |
CG5930-PB | 1092 | TfIIA-L-RB | 223..718 | 248..743 | 2430 | 99.5 | Plus |
CG5930-PC | 975 | TfIIA-L-RC | 106..601 | 248..743 | 2430 | 99.5 | Plus |
CG5930-PB | 1092 | TfIIA-L-RB | 1..225 | 17..241 | 1100 | 99.5 | Plus |
CG5930-PC | 975 | TfIIA-L-RC | 1..108 | 134..241 | 540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:07:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIA-L-RA | 1595 | CG5930-RA | 173..899 | 17..743 | 3590 | 99.6 | Plus |
TfIIA-L-RB | 1586 | CG5930-RB | 173..890 | 17..743 | 3445 | 98.3 | Plus |
TfIIA-L-RC | 1440 | CG5930-RC | 50..744 | 40..743 | 3345 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:07:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27255088..27255395 | 249..556 | 1540 | 100 | Plus |
3R | 32079331 | 3R | 27254523..27254728 | 36..241 | 1015 | 99.5 | Plus |
3R | 32079331 | 3R | 27255456..27255642 | 557..743 | 905 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:07:22 has no hits.
BO08640.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:52:19 Download gff for
BO08640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5930-PA | 1..727 | 17..743 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:49:04 Download gff for
BO08640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5930-PA | 1..727 | 17..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:28:40 Download gff for
BO08640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIA-L-RA | 167..899 | 11..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:44:53 Download gff for
BO08640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIA-L-RA | 167..899 | 11..743 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:44:53 Download gff for
BO08640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27254528..27254728 | 41..243 | 99 | -> | Plus |
3R | 27255084..27255395 | 244..556 | 98 | -> | Plus |
3R | 27255456..27255642 | 557..743 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:28:40 Download gff for
BO08640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23080250..23080450 | 41..243 | 99 | -> | Plus |
arm_3R | 23080806..23081117 | 244..556 | 98 | -> | Plus |
arm_3R | 23081178..23081364 | 557..743 | 98 | | Plus |
BO08640.pep Sequence
Translation from 16 to 1116
> BO08640.pep
MALCQTSVLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQVWRNKLLA
SKAVELSPDSGDGSHPPPIVANNPKSHKAANAKAKKAAAATAVTSHQHIG
GNSSMSSLVGLKSSAGMAAGSGIRNGLVPIKQEVNSQNPPPLHPTSAASM
MQKQQQAASSGQGSIPIVATLDPNRIMPVNITLPSPAGSASSESRVLTIQ
VPASALQENQLTQILTAHLISSIMSLPTTLASSVLQQHVNAALSSANHQK
TLAAAKQLDGALDSSDEDESEESDDNIDNDDDDDLDKDDDEDAEHEDAAE
EEPLNSEDDVTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNM
RGKDYVFQKSNGDAEW*
BO08640.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIA-L-PA | 366 | CG5930-PA | 1..366 | 1..366 | 1855 | 100 | Plus |
TfIIA-L-PB | 363 | CG5930-PB | 1..363 | 1..366 | 1824 | 99.2 | Plus |
TfIIA-L-PC | 324 | CG5930-PC | 1..324 | 40..366 | 1630 | 99.1 | Plus |