Clone BO08640 Report

Search the DGRC for BO08640

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:86
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptTfIIA-L-RA
Protein status:BO08640.pep: full length peptide match
Sequenced Size:1134

Clone Sequence Records

BO08640.complete Sequence

1134 bp assembled on 2010-04-12

> BO08640.complete
GAAGTTATCAGTCGACATGGCGCTATGCCAGACATCGGTGCTGAAGGTGT
ACCATGCCGTGATCGAGGACGTCATCACAAATGTGCGGGACGCGTTCCTG
GACGAGGGCGTCGACGAACAGGTGCTGCAGGAGATGAAGCAGGTCTGGCG
CAACAAGTTGCTTGCTAGCAAGGCCGTCGAGCTGAGCCCGGACTCCGGCG
ATGGCTCCCATCCGCCACCCATCGTGGCCAACAATCCAAAGAGCCACAAG
GCAGCGAATGCCAAGGCCAAGAAGGCCGCCGCCGCAACCGCGGTCACATC
ACACCAACATATCGGCGGCAACAGCTCCATGTCCTCGCTGGTGGGGCTTA
AGTCGTCCGCTGGAATGGCCGCCGGCAGCGGCATAAGGAACGGGCTGGTG
CCCATCAAGCAGGAAGTCAACTCACAGAATCCACCGCCACTGCATCCTAC
CTCGGCTGCAAGCATGATGCAGAAACAGCAGCAGGCGGCGAGCAGTGGAC
AGGGTTCCATTCCAATTGTGGCCACGCTGGACCCCAATCGCATTATGCCT
GTTAACATCACGCTGCCATCGCCAGCCGGCTCTGCCAGTTCGGAATCTCG
AGTGCTCACCATACAAGTGCCTGCCTCCGCGCTGCAGGAGAATCAGTTGA
CCCAAATTCTGACGGCCCACCTGATTTCATCCATCATGTCCTTGCCCACC
ACGTTGGCCTCGTCTGTGCTTCAGCAGCACGTAAACGCAGCGCTAAGCAG
CGCCAATCACCAGAAAACTCTTGCCGCCGCCAAGCAATTGGACGGTGCCC
TGGACTCCTCCGATGAGGATGAAAGCGAGGAGAGCGACGACAACATCGAC
AACGATGACGACGATGACCTAGACAAGGACGATGACGAGGATGCGGAGCA
CGAGGATGCTGCCGAGGAGGAGCCGCTCAACAGCGAAGACGATGTCACCG
ACGAAGACTCTGCCGAAATGTTTGACACAGATAACGTGATTGTTTGTCAG
TACGATAAGATCACCAGGTCGCGAAACAAATGGAAATTCTATCTCAAAGA
TGGCATCATGAACATGCGGGGCAAGGACTACGTGTTCCAGAAATCGAATG
GCGACGCCGAGTGGTAGCAAGCTTTCTAGACCAT

BO08640.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIA-L-RA 1101 CG5930-PA 1..1100 17..1116 5500 100 Plus
TfIIA-L-RB 1092 CG5930-PB 1..1091 17..1116 5330 99.2 Plus
TfIIA-L-RC 975 CG5930-PC 1..974 134..1116 4745 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIA-L-RA 1595 CG5930-RA 173..1272 17..1116 5500 100 Plus
TfIIA-L-RB 1586 CG5930-RB 173..1263 17..1116 5330 99.2 Plus
TfIIA-L-RC 1440 CG5930-RC 50..1117 40..1116 5215 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27255088..27255395 249..556 1540 100 Plus
3R 32079331 3R 27255726..27255970 765..1009 1225 100 Plus
3R 32079331 3R 27255456..27255663 557..764 1040 100 Plus
3R 32079331 3R 27254527..27254728 40..241 1010 100 Plus
3R 32079331 3R 27256032..27256140 1008..1116 545 100 Plus
Blast to na_te.dros performed 2014-11-27 07:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 5723..5805 801..886 116 62.8 Plus

BO08640.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:25:18 Download gff for BO08640.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIA-L-RA 173..1272 17..1118 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:48 Download gff for BO08640.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIA-L-RA 173..1272 17..1118 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:09 Download gff for BO08640.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIA-L-RA 173..1272 17..1118 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:09 Download gff for BO08640.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27255084..27255395 244..556 98 -> Plus
3R 27255456..27255663 557..764 100 -> Plus
3R 27255726..27255970 765..1009 100 -> Plus
3R 27256034..27256140 1010..1118 98   Plus
3R 27253602..27253625 17..40 100 -> Plus
3R 27254528..27254728 41..243 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:48 Download gff for BO08640.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23079324..23079347 17..40 100 -> Plus
arm_3R 23080806..23081117 244..556 98 -> Plus
arm_3R 23080250..23080450 41..243 99 -> Plus
arm_3R 23081178..23081385 557..764 100 -> Plus
arm_3R 23081448..23081692 765..1009 100 -> Plus
arm_3R 23081756..23081862 1010..1118 98   Plus

BO08640.3prime Sequence

892 bp (856 high quality bases) assembled on 2006-01-09

> BO08640.3prime
ATGGTCTAGAAAGCTTGCTACCACTCGGCGTCGCCATTCGATTTCTGGAA
CACGTAGTCCTTGCCCCGCATGTTCATGATGCCATCTTTGAGATAGAATT
TCCATTTGTTTCGCGACCTGGTGATCTTATCGTACTGACAAACAATCACG
TTATCTGTGTCAAACATTTCGGCAGAGTCTTCGTCGGTGACATCGTCTTC
GCTGTTGAGCGGCTCCTCCTCGGCAGCATCCTCGTGCTCCGCATCCTCGT
CATCGTCCTTGTCTAGGTCATCGTCGTCATCGTTGTCGATGTTGTCGTCG
CTCTCCTCGCTTTCATCCTCATCGGAGGAGTCCAGGGCACCGTCCAATTG
CTTGGCGGCGGCAAGAGTTTTCTGGTGATTGGCGCTGCTTAGCGCTGCGT
TTACGTGCTGCTGAAGCACAGACGAGGCCAACGTGGTGGGCAAGGACATG
ATGGATGAAATCAGGTGGGCCGTCAGAATTTGGGTCAACTGATTCTCCTG
CAGCGCGGAGGCAGGCACTTGTATGGTGAGCACTCGAGATTCCGAACTGG
CAGAGCCGGCTGGCGATGGCAGCGTGATGTTAACAGGCATAATGCGATTG
GGGTCCAGCGTGGCCACAATTGGAATGGAACCCTGTCCACTGCTCGCCGC
CTGCTGCTGTTTCTGCATCATGCTTGCAGCCGAGGTAGGATGCAGTGGCG
GTGGATTCTGTGAGTTGACTTCCTGCTTGATGGGCACCAGCCCGTTCCTT
ATGCCGCTGCCGGCGGCCATTCCAGCGGACGACTTAAGCCCCACCAGCGA
GGACATGGAGCTGTTGCCGCCGATATGTTGGTGTGATGTGACCGCGGTTG
CGGCGGCGGCCTTCTTGGCCTTGGCATTCGCTGCCTTGTGGC

BO08640.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:28:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG5930-PA 1101 TfIIA-L-RA 227..1100 892..19 4370 100 Minus
CG5930-PC 975 TfIIA-L-RC 106..974 887..19 4345 100 Minus
CG5930-PB 1092 TfIIA-L-RB 223..1091 887..19 4345 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:02:06
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIA-L-RA 1595 CG5930-RA 399..1272 892..19 4370 100 Minus
TfIIA-L-RB 1586 CG5930-RB 395..1263 887..19 4345 100 Minus
TfIIA-L-RC 1440 CG5930-RC 249..1117 887..19 4345 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:01:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27255088..27255395 886..579 1540 100 Minus
3R 32079331 3R 27255726..27255970 370..126 1225 100 Minus
3R 32079331 3R 27255456..27255663 578..371 1040 100 Minus
3R 32079331 3R 27256032..27256140 127..19 545 100 Minus
Blast to na_te.dros performed 2015-02-12 00:02:02
Subject Length Description Subject Range Query Range Score Percent Strand
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 556..611 338..280 135 72.9 Minus
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 5723..5805 334..249 116 62.8 Minus

BO08640.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:52:18 Download gff for BO08640.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5930-PA 227..1101 18..892 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:49:02 Download gff for BO08640.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5930-PA 227..1101 18..892 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:39:45 Download gff for BO08640.3prime
Subject Subject Range Query Range Percent Splice Strand
TfIIA-L-RA 399..1272 19..892 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:34 Download gff for BO08640.3prime
Subject Subject Range Query Range Percent Splice Strand
TfIIA-L-RA 399..1272 19..892 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:34 Download gff for BO08640.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27255088..27255395 579..886 100 -> Minus
3R 27255456..27255663 371..578 100 -> Minus
3R 27255726..27255970 126..370 100 -> Minus
3R 27256034..27256140 19..125 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:39:45 Download gff for BO08640.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23080810..23081117 579..886 100 -> Minus
arm_3R 23081178..23081385 371..578 100 -> Minus
arm_3R 23081448..23081692 126..370 100 -> Minus
arm_3R 23081756..23081862 19..125 100   Minus

BO08640.5prime Sequence

743 bp (732 high quality bases) assembled on 2006-01-09

> BO08640.5prime
GAAGTTATCAGTCGACATGGCGCTATGCCAGACATCGCTGCTGAAGGTGT
ACCATGCCGTGATCGAGGACGTCATCACAAATGTGCGGGACGCGTTCCTG
GACGAGGGCGTCGACGAACAGGTGCTGCAGGAGATGAAGCAGGTCTGGCG
CAACAAGTTGCTTGCTAGCAAGGCCGTCGAGCTGAGCCCGGACTCCGGCG
ATGGCTCCCATCCGCCACCCATCGTGGCCAACAATCCAAAGAGCCACAAG
GCAGCGAATGCCAAGGCCAAGAAGGCCGCCGCCGCAACCGCGGTCACATC
ACACCAACATATCGGCGGCAACAGCTCCATGTCCTCGCTGGTGGGGCTTA
AGTCGTCCGCTGGAATGGCCGCCGGCAGCGGCATAAGGAACGGGCTGGTG
CCCATCAAGCAGGAAGTCAACTCACAGAATCCACCGCCACTGCATCCTAC
CTCGGCTGCAAGCATGATGCAGAAACAGCAGCAGGCGGCGAGCAGTGGAC
AGGGTTCCATTCCAATTGTGGCCACGCTGGACCCCAATCGCATTATGCCT
GTTAACATCACGCTGCCATCGCCAGCCGGCTCTGCCAGTTCGGAATCTCG
AGTGCTCACCATACAAGTGCCTGCCTCCGCGCTGCAGGAGAATCAGTTGA
CCCAAATTCTGACGGCCCACCTGATTTCATCCATCATGTCCTTGCCCCCC
ACGTTGGCCTCGTCTGTGCTTCAGCAGCACGTAAACCCAGCGC

BO08640.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:28:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG5930-PA 1101 TfIIA-L-RA 1..727 17..743 3560 99.5 Plus
CG5930-PB 1092 TfIIA-L-RB 223..718 248..743 2430 99.5 Plus
CG5930-PC 975 TfIIA-L-RC 106..601 248..743 2430 99.5 Plus
CG5930-PB 1092 TfIIA-L-RB 1..225 17..241 1100 99.5 Plus
CG5930-PC 975 TfIIA-L-RC 1..108 134..241 540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:07:23
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIA-L-RA 1595 CG5930-RA 173..899 17..743 3590 99.6 Plus
TfIIA-L-RB 1586 CG5930-RB 173..890 17..743 3445 98.3 Plus
TfIIA-L-RC 1440 CG5930-RC 50..744 40..743 3345 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:07:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27255088..27255395 249..556 1540 100 Plus
3R 32079331 3R 27254523..27254728 36..241 1015 99.5 Plus
3R 32079331 3R 27255456..27255642 557..743 905 98.9 Plus
Blast to na_te.dros performed on 2015-02-10 20:07:22 has no hits.

BO08640.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:52:19 Download gff for BO08640.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5930-PA 1..727 17..743 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:49:04 Download gff for BO08640.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5930-PA 1..727 17..743 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:28:40 Download gff for BO08640.5prime
Subject Subject Range Query Range Percent Splice Strand
TfIIA-L-RA 167..899 11..743 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:44:53 Download gff for BO08640.5prime
Subject Subject Range Query Range Percent Splice Strand
TfIIA-L-RA 167..899 11..743 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:44:53 Download gff for BO08640.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27254528..27254728 41..243 99 -> Plus
3R 27255084..27255395 244..556 98 -> Plus
3R 27255456..27255642 557..743 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:28:40 Download gff for BO08640.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23080250..23080450 41..243 99 -> Plus
arm_3R 23080806..23081117 244..556 98 -> Plus
arm_3R 23081178..23081364 557..743 98   Plus

BO08640.pep Sequence

Translation from 16 to 1116

> BO08640.pep
MALCQTSVLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQVWRNKLLA
SKAVELSPDSGDGSHPPPIVANNPKSHKAANAKAKKAAAATAVTSHQHIG
GNSSMSSLVGLKSSAGMAAGSGIRNGLVPIKQEVNSQNPPPLHPTSAASM
MQKQQQAASSGQGSIPIVATLDPNRIMPVNITLPSPAGSASSESRVLTIQ
VPASALQENQLTQILTAHLISSIMSLPTTLASSVLQQHVNAALSSANHQK
TLAAAKQLDGALDSSDEDESEESDDNIDNDDDDDLDKDDDEDAEHEDAAE
EEPLNSEDDVTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNM
RGKDYVFQKSNGDAEW*

BO08640.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:41
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIA-L-PA 366 CG5930-PA 1..366 1..366 1855 100 Plus
TfIIA-L-PB 363 CG5930-PB 1..363 1..366 1824 99.2 Plus
TfIIA-L-PC 324 CG5930-PC 1..324 40..366 1630 99.1 Plus