Clone Sequence Records
BO08648.3prime Sequence
847 bp (754 high quality bases) assembled on 2006-01-09
> BO08648.3prime
ATGGTCTAGAAAGCTTGCGGAGGCCTTGGCGAACTGAATGACCGAGCTCA
TTCGCATCACCTTGGACCCGGGTCCATCCCCGGCGCCAACGGAAGCGGCA
CCACCGGCGGCGGAGGTGCCATCTCCGCTAGCCTTCTCCGAATCCACCTG
ACCGTCGTCGCCCTTGTTCATGTAGTGCTTGCGCTTGCGCAACGGCAGCG
TCATCACGTTCCGGTCGGCCATCATCAGGGAGTCGCTCTCCGGCGAGGAG
CTACGTTCCGGCGACTCCGTGCTGGAACGCAGGCCGATGGCCGCCTCCAC
GCGTCGCACAACGTCCGGATTGGGTAGAGCGGATTCATATTTGGGCACTG
GTGCATAGCCCTTGTGCAGCCCGTGGCGAGCGAGATCACCACGCTTGAAG
TGCTCGATCAGCACGGTGGCTTCATGGGTGTCATCGTAGTTAGCCGCTAG
ATCGCTGACGTGCAGAGTGGGCACCTGTGGCTGGTGGCTTGGCGCCGGCT
GCTCCGTTGGGGGTAAGGAGCCGTGGCCGCGGCACAACTGCATCATTTGC
CAGGCGGCTGCGTGCACATCCTCATCCTGCACCTGGTCATCGTTGTCGTC
ATGGCGACGCGCAATGCTGGCCGCTTCAAGCAGGGCAGGATTGATGGTTA
GACCAGCGGGTTGTGGCTGCAGTTCGAGTAGACTTGGCGGTGCCTGGTAG
TAGTCCACAGTGCTTTCTGGCAGCTGACCCTGGACCTGTTGCATGCTCAA
ATCTGTGGGCTCCTCGTCTGCATAGGTGCTGTGGGCGGGCTGGGCGCTGG
ACACGCCGCTGTCCCGGCTCAAGGCATCCGCCTCCATCTGGACGGGC
BO08648.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:28:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18783-PA | 2376 | Kr-h1-RA | 1545..2373 | 847..19 | 4145 | 100 | Minus |
| CG18783-PB | 2538 | Kr-h1-RB | 1707..2535 | 847..19 | 4145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 11:27:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kr-h1-RB | 4168 | CG45074-RB | 2395..3223 | 847..19 | 4145 | 100 | Minus |
| Kr-h1-RA | 4473 | CG45074-RA | 2700..3528 | 847..19 | 4145 | 100 | Minus |
| CG45075-RA | 4168 | CG45075-RA | 2395..3223 | 847..19 | 4145 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 11:27:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6094641..6095153 | 847..335 | 2565 | 100 | Minus |
| 2L | 23513712 | 2L | 6095238..6095553 | 334..19 | 1580 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 11:27:26 has no hits.
BO08648.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:52:30 Download gff for
BO08648.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kr-h1-PB | 1707..2538 | 18..847 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:49:15 Download gff for
BO08648.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18783-PB | 1707..2538 | 18..847 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:40:32 Download gff for
BO08648.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kr-h1-RA | 3495..4323 | 19..847 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:33:48 Download gff for
BO08648.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45075-RA | 2395..3223 | 19..847 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:33:48 Download gff for
BO08648.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6094641..6095153 | 335..847 | 100 | -> | Minus |
| 2L | 6095238..6095553 | 19..334 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:40:32 Download gff for
BO08648.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6094641..6095153 | 335..847 | 100 | -> | Minus |
| arm_2L | 6095238..6095553 | 19..334 | 100 | | Minus |
BO08648.5prime Sequence
779 bp (775 high quality bases) assembled on 2006-01-09
> BO08648.5prime
GAAGTTATCAGTCGACATGACTGAAAGCAAGAATGATACAAAATCTTGGG
CACCCAAACAAATTTGGATTAAGGATGTTCTCAAGAAATCGGGCACGGAA
CTGCTCGATATATCCAAGAGTCCCGCAAAGGCTGTTGCCGTCAAAAAATC
GCCGGCGAAAGATTCAGCCACAACCAAAATGGTTTACTATTCCGCCAACC
AGCTGCTTATAAAAACGGAACAATCTAGTCAGGCGCAGTTCTGCCTCCAG
GTTCCGCCTCCACTAACAGCGACGACCACGAGCGTGGGCCTAGGAGTTCC
GCCATCCGGCGGCCAACAGGAGCACTTCGAGCTGCTGCAGACGCCGCAGC
AGCGACAAATGCAACTGCAGCTACAGGACCAGCACCAGCAGGAGCAGCAG
CAGTTTGTCAGCTACCAACTGGCCATCCAGCAGCATCAGAAGCAGCAACA
ACAGCAGCAACATGAAAGTATTACGAACGCAGCACCCACAGCAGCTCCAT
CAGCCCAGCGGATCAAGACAGAGCCCGTCGGCGGATTCCCAGCGTCGGCA
GCCGTGGTGTCGCAGGTGCGCAAGCCCAGCGCCAGCAAACCGCAATTCAA
GTGCGACCAGTGTGGCATGACCTTTGGCAGCAAGTCCGCCCACACCTCAC
ACACCAAGTCGCACTCGAAGAACCAAGATCTGTCGCTTAATGGCGCCTCT
GGAGCCGGCGTTGCTGCGCCCGTCTCAACCGCGGCCATCGAGCTCAATGA
TGCCGGTCTGCCGGTGGGCATTCCCAAGA
BO08648.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:28:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18783-PB | 2538 | Kr-h1-RB | 1..763 | 17..779 | 3815 | 100 | Plus |
| CG18783-PA | 2376 | Kr-h1-RA | 1..601 | 179..779 | 3005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:34:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kr-h1-RB | 4168 | CG45074-RB | 689..1451 | 17..779 | 3815 | 100 | Plus |
| CG45075-RA | 4168 | CG45075-RA | 689..1451 | 17..779 | 3815 | 100 | Plus |
| Kr-h1-RA | 4473 | CG45074-RA | 1138..1756 | 161..779 | 3095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:34:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6092993..6093612 | 160..779 | 3100 | 100 | Plus |
| 2L | 23513712 | 2L | 6092100..6092244 | 17..161 | 725 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 05:34:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6944 | 330..549 | 312 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2543 | 339..598 | 282 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6945 | 314..525 | 276 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2331..2523 | 314..504 | 259 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6906 | 314..462 | 257 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6785..6923 | 314..455 | 234 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6856 | 356..511 | 221 | 66.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1063..1168 | 361..469 | 203 | 68.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1030..1130 | 399..504 | 202 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6824 | 384..504 | 190 | 69.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6956 | 428..662 | 187 | 58.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1178 | 393..518 | 182 | 66.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2421 | 388..504 | 176 | 65.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1038..1137 | 354..462 | 173 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2294..2379 | 421..504 | 172 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2462 | 428..554 | 170 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2748..2861 | 380..503 | 165 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6680..6782 | 398..504 | 155 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2625..2663 | 428..466 | 150 | 87.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2292..2397 | 397..504 | 147 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1590 | 431..507 | 142 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1587 | 385..461 | 135 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1478..1582 | 354..462 | 128 | 63.6 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 970..1033 | 429..492 | 122 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1527..1589 | 428..488 | 121 | 68.3 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 981..1011 | 428..458 | 119 | 87.1 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 7585..7623 | 618..580 | 114 | 76.9 | Minus |
BO08648.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:52:31 Download gff for
BO08648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kr-h1-PB | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:49:16 Download gff for
BO08648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18783-PB | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:57:43 Download gff for
BO08648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kr-h1-RB | 678..1445 | 10..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:34:21 Download gff for
BO08648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45075-RA | 683..1450 | 10..778 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:34:21 Download gff for
BO08648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6092094..6092244 | 10..161 | 98 | -> | Plus |
| 2L | 6092995..6093611 | 162..778 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:57:43 Download gff for
BO08648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6092094..6092244 | 10..161 | 98 | -> | Plus |
| arm_2L | 6092995..6093611 | 162..778 | 100 | | Plus |
BO08648.complete Sequence
2569 bp assembled on 2008-08-14
GenBank Submission: FJ631264
> BO08648.complete
GAAGTTATCAGTCGACATGACTGAAAGCAAGAATGATACAAAATCTTGGG
CACCCAAACAAATTTGGATTAAGGATGTTCTCAAGAAATCGGGCACGGAA
CTGCTCGATATATCCAAGAGTCCCGCAAAGGCTGTTGCCGTCAAAAAATC
GCCGGCGAAAGATTCAGCCACAACCAAAATGGTTTACTATTCCGCCAACC
AGCTGCTTATAAAAACGGAACAATCTAGTCAGGCGCAGTTCTGCCTCCAG
GTTCCGCCTCCACTAACAGCGACGACCACGAGCGTGGGCCTAGGAGTTCC
GCCATCCGGCGGCCAACAGGAGCACTTCGAGCTGCTGCAGACGCCGCAGC
AGCGACAAATGCAACTGCAGCTACAGGACCAGCACCAGCAGGAGCAGCAG
CAGTTTGTCAGCTACCAACTGGCCATCCAGCAGCATCAGAAGCAGCAACA
ACAGCAGCAACATGAAAGTATTACGAACGCAGCACCCACAGCAGCTCCAT
CAGCCCAGCGGATCAAGACAGAGCCCGTCGGCGGATTCCCAGCGTCGGCA
GCCGTGGTGTCGCAGGTGCGCAAGCCCAGCGCCAGCAAACCGCAATTCAA
GTGCGACCAGTGTGGCATGACCTTTGGCAGCAAGTCCGCCCACACCTCAC
ACACCAAGTCGCACTCGAAGAACCAAGATCTGTCGCTTAATGGCGCCTCT
GGAGCCGGCGTTGCTGCGCCCGTCTCAACCGCGGCCATCGAGCTCAATGA
TGCCGGTCTGCCGGTGGGCATTCCCAAGAGCCCCACCATCAAGCCGCTGG
CCAACGTGGCCGCCGGAGCAGATCCCTATCAGTGCAATGTTTGCCAGAAA
ACATTCGCCGTACCCGCCAGGCTGATCCGCCACTACCGCACCCACACTGG
TGAACGGCCATTCGAGTGCGAGTTCTGCCACAAGCTGTTCAGCGTGAAGG
AGAACCTCCAGGTGCACCGGCGCATCCACACGAAGGAGCGTCCGTACAAG
TGTGACGTCTGTGGACGGGCATTCGAACACTCCGGGAAGCTGCACCGCCA
CATGCGCATTCACACCGGCGAGCGGCCACACAAGTGCTCCGTGTGCGAGA
AGACATTCATCCAGTCCGGCCAGCTGGTGATCCATATGCGCACGCACACC
GGCGAGAAGCCGTACAAGTGCCCGGAGCCGGGATGCGGCAAAGGTTTCAC
CTGCTCCAAGCAGCTCAAGGTGCACTCGCGAACGCACACGGGCGAGAAGC
CCTACCACTGTGACATCTGCTTCCGGGACTTTGGCTACAATCATGTGCTG
AAACTGCATCGCGTCCAGCACTACGGCTCCAAGTGCTACAAGTGCACCAT
CTGCGACGAGACGTTCAAGAACAAGAAGGAGATGGAGGCCCACATCAAGG
GCCATGCCAACGAAGTACCCGACGACGAAGCGGAGGCGGCGGCTGCGTCG
GCAGCAGCATCAACGTCCGCAGGCTCCTCCGCCGGATCGCCGTCCTTGCA
AGGAGTCAGCAGCAACTCCGAGAGCAGCAACCACTCGCCGCCCAGCTCGC
CACCGGCCACAAAGAAACCTCGCCAGGCTCGCCAGCCGCGCGTTTCCAAA
ACCGTTGCAGCCACCCTTTCCATCCCTACCTCCTCGCCGCTCTCGCCCAG
CTCACTCAGCTCCACATACTCGCCATCGGCCAGCAGCATGGCCTCGCCAC
CACCCACATCGGCCCACTACCTGCCCGTCCAGATGGAGGCGGATGCCTTG
AGCCGGGACAGCGGCGTGTCCAGCGCCCAGCCCGCCCACAGCACCTATGC
AGACGAGGAGCCCACAGATTTGAGCATGCAACAGGTCCAGGGTCAGCTGC
CAGAAAGCACTGTGGACTACTACCAGGCACCGCCAAGTCTACTCGAACTG
CAGCCACAACCCGCTGGTCTAACCATCAATCCTGCCCTGCTTGAAGCGGC
CAGCATTGCGCGTCGCCATGACGACAACGATGACCAGGTGCAGGATGAGG
ATGTGCACGCAGCCGCCTGGCAAATGATGCAGTTGTGCCGCGGCCACGGC
TCCTTACCCCCAACGGAGCAGCCGGCGCCAAGCCACCAGCCACAGGTGCC
CACTCTGCACGTCAGCGATCTAGCGGCTAACTACGATGACACCCATGAAG
CCACCGTGCTGATCGAGCACTTCAAGCGTGGTGATCTCGCTCGCCACGGG
CTGCACAAGGGCTATGCACCAGTGCCCAAATATGAATCCGCTCTACCCAA
TCCGGACGTTGTGCGACGCGTGGAGGCGGCCATCGGCCTGCGTTCCAGCA
CGGAGTCGCCGGAACGTAGCTCCTCGCCGGAGAGCGACTCCCTGATGATG
GCCGACCGGAACGTGATGACGCTGCCGTTGCGCAAGCGCAAGCACTACAT
GAACAAGGGCGACGACGGTCAGGTGGATTCGGAGAAGGCTAGCGGAGATG
GCACCTCCGCCGCCGGTGGTGCCGCTTCCGTTGGCGCCGGGGATGGACCC
GGGTCCAAGGTGATGCGAATGAGCTCGGTCATTCAGTTCGCCAAGGCCTC
CGCAAGCTTTCTAGACCAT
BO08648.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:58:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kr-h1-RB | 2538 | CG45074-PB | 1..2535 | 17..2551 | 12675 | 100 | Plus |
| Kr-h1-RA | 2376 | CG45074-PA | 1..2373 | 179..2551 | 11865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:59:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kr-h1-RB | 4168 | CG45074-RB | 689..3223 | 17..2551 | 12675 | 100 | Plus |
| CG45075-RA | 4168 | CG45075-RA | 689..3223 | 17..2551 | 12675 | 100 | Plus |
| Kr-h1-RA | 4473 | CG45074-RA | 1138..3528 | 161..2551 | 11955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:58:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6093792..6095153 | 874..2235 | 6810 | 100 | Plus |
| 2L | 23513712 | 2L | 6092993..6093707 | 160..874 | 3575 | 100 | Plus |
| 2L | 23513712 | 2L | 6095238..6095553 | 2236..2551 | 1580 | 100 | Plus |
| 2L | 23513712 | 2L | 6092100..6092244 | 17..161 | 725 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 08:58:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6944 | 330..549 | 312 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2543 | 339..598 | 282 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6945 | 314..525 | 276 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2331..2523 | 314..504 | 259 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6906 | 314..462 | 257 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6785..6923 | 314..455 | 234 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6856 | 356..511 | 221 | 66.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1063..1168 | 361..469 | 203 | 68.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1030..1130 | 399..504 | 202 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6824 | 384..504 | 190 | 69.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6956 | 428..662 | 187 | 58.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1178 | 393..518 | 182 | 66.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2421 | 388..504 | 176 | 65.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1038..1137 | 354..462 | 173 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2294..2379 | 421..504 | 172 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2462 | 428..554 | 170 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2748..2861 | 380..503 | 165 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6680..6782 | 398..504 | 155 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2625..2663 | 428..466 | 150 | 87.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2292..2397 | 397..504 | 147 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1590 | 431..507 | 142 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1587 | 385..461 | 135 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1478..1582 | 354..462 | 128 | 63.6 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 970..1033 | 429..492 | 122 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1527..1589 | 428..488 | 121 | 68.3 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 981..1011 | 428..458 | 119 | 87.1 | Plus |
BO08648.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:13 Download gff for
BO08648.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kr-h1-RB | 678..3218 | 10..2551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:03:31 Download gff for
BO08648.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kr-h1-RB | 684..3218 | 17..2553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:33 Download gff for
BO08648.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kr-h1-RB | 684..3218 | 17..2553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:29:56 Download gff for
BO08648.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45075-RA | 689..3223 | 17..2553 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:29:56 Download gff for
BO08648.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6095238..6095553 | 2236..2553 | 99 | | Plus |
| 2L | 6092100..6092244 | 17..161 | 100 | -> | Plus |
| 2L | 6092995..6093707 | 162..874 | 100 | -> | Plus |
| 2L | 6093793..6095153 | 875..2235 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:03:31 Download gff for
BO08648.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6092100..6092244 | 17..161 | 100 | -> | Plus |
| arm_2L | 6092995..6093707 | 162..874 | 100 | -> | Plus |
| arm_2L | 6093793..6095153 | 875..2235 | 100 | -> | Plus |
| arm_2L | 6095238..6095553 | 2236..2553 | 99 | | Plus |
BO08648.pep Sequence
Translation from 16 to 2569
> BO08648.pep
MTESKNDTKSWAPKQIWIKDVLKKSGTELLDISKSPAKAVAVKKSPAKDS
ATTKMVYYSANQLLIKTEQSSQAQFCLQVPPPLTATTTSVGLGVPPSGGQ
QEHFELLQTPQQRQMQLQLQDQHQQEQQQFVSYQLAIQQHQKQQQQQQHE
SITNAAPTAAPSAQRIKTEPVGGFPASAAVVSQVRKPSASKPQFKCDQCG
MTFGSKSAHTSHTKSHSKNQDLSLNGASGAGVAAPVSTAAIELNDAGLPV
GIPKSPTIKPLANVAAGADPYQCNVCQKTFAVPARLIRHYRTHTGERPFE
CEFCHKLFSVKENLQVHRRIHTKERPYKCDVCGRAFEHSGKLHRHMRIHT
GERPHKCSVCEKTFIQSGQLVIHMRTHTGEKPYKCPEPGCGKGFTCSKQL
KVHSRTHTGEKPYHCDICFRDFGYNHVLKLHRVQHYGSKCYKCTICDETF
KNKKEMEAHIKGHANEVPDDEAEAAAASAAASTSAGSSAGSPSLQGVSSN
SESSNHSPPSSPPATKKPRQARQPRVSKTVAATLSIPTSSPLSPSSLSST
YSPSASSMASPPPTSAHYLPVQMEADALSRDSGVSSAQPAHSTYADEEPT
DLSMQQVQGQLPESTVDYYQAPPSLLELQPQPAGLTINPALLEAASIARR
HDDNDDQVQDEDVHAAAWQMMQLCRGHGSLPPTEQPAPSHQPQVPTLHVS
DLAANYDDTHEATVLIEHFKRGDLARHGLHKGYAPVPKYESALPNPDVVR
RVEAAIGLRSSTESPERSSSPESDSLMMADRNVMTLPLRKRKHYMNKGDD
GQVDSEKASGDGTSAAGGAASVGAGDGPGSKVMRMSSVIQFAKASASFLD
H
BO08648.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:45:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kr-h1-PB | 845 | CG45074-PB | 1..845 | 1..845 | 4440 | 100 | Plus |
| Kr-h1-PA | 791 | CG45074-PA | 1..791 | 55..845 | 4168 | 100 | Plus |
| crol-PG | 878 | CG14938-PG | 240..500 | 185..468 | 498 | 35.9 | Plus |
| Meics-PB | 571 | CG8474-PB | 230..513 | 196..470 | 485 | 33 | Plus |
| Meics-PA | 583 | CG8474-PA | 242..525 | 196..470 | 485 | 33 | Plus |
| crol-PG | 878 | CG14938-PG | 286..856 | 174..704 | 434 | 25.1 | Plus |
| crol-PG | 878 | CG14938-PG | 398..866 | 174..651 | 410 | 24.4 | Plus |
| crol-PG | 878 | CG14938-PG | 14..416 | 79..468 | 405 | 27.7 | Plus |
| Meics-PB | 571 | CG8474-PB | 268..571 | 173..411 | 283 | 25.7 | Plus |
