Clone BO08649 Report

Search the DGRC for BO08649

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:86
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptAtf-2-RA
Protein status:BO08649.pep: Imported from assembly
Sequenced Size:2584

Clone Sequence Records

BO08649.3prime Sequence

865 bp (768 high quality bases) assembled on 2006-01-09

> BO08649.3prime
ATGGTCTAGAAAGCTTGCCTTCTTGCTCTTGCGCTTCTGCTTGGGCTCCT
CCCCTCCGGTCGCTGAGGCTGCTGATGCGGCTGAAGCTGCTGCTGCTGCA
GTGCCCGTTGCGTTCAGGAGATTTATGTTCGGCTTGACCGTTCCCTTCTT
CAGGGTGGCCGGCTGCTGGGGGGTAGCCTGCGTGATGTTGTTATTGGTCG
CTGCTGCCGCATTGGCAGCTCCAGCGGTTTGGGACGACAGGTTGTTTGAC
GGCGTGGCCGGCGTCTCGTCCAGGAAGAGCGGATTCTTCACCTCCATCTC
ACCAGTGGGCGCCAGGCCGGGGCACTCGTACACCGTGTAGTCGCCCTCCT
CGTTGTCGTCGTCGCTCTCCACGTCCGACATGCCGCAGCTACCATCCGTG
GCCTGGTTCTCCATGGCGATGATCTGCTGCTTCTGGTGCTGGTAGTGGTA
CATTTGGGCGCTCTGGGCCAGCTTTCTGTCACCGGACGGCGAGACATCCT
TGTTCGGCCCGGTAACGCCGTAGGCAGGGTATTCCACGTCCGCTGCTGCC
TTGTGTCGATTATGGAACCAAGTTACTCCGAGGGCAAGAAGCCCAACGGT
CACCGCTGCACTAACCCCCGCTATTAGGGCCACTATGTACACCCCCATCT
CGCTGTTCATGCCCAGGTGCTGGCGCAGCACAATCTGCTCCTGACTGGAA
TCACCTCCGTTGACCAGCGTCAAATGAGAGGGCGCTTTGCTTTGCTTTTG
CAGCTTGTTGATCAGTGCGTTAAGTTCATGGGGTGGTTGTTCTTTGCTCT
GGGGAATATTCACTCCCGCCACGGCTGCGGCGGCGGCGGACTGGGGATTG
ATGCGGTGGAAGTTG

BO08649.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:28:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG30420-PB 1611 Atf-2-RB 762..1608 865..19 4235 100 Minus
CG30420-PA 2553 Atf-2-RA 1704..2550 865..19 4235 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:20:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG44247-RB 3629 CG44247-RB 1275..2121 865..19 4235 100 Minus
CG44247-RA 2696 CG44247-RA 1275..2121 865..19 4235 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:20:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24879163..24879713 569..19 2755 100 Minus
2R 25286936 2R 24878806..24879104 865..567 1495 100 Minus
Blast to na_te.dros performed 2015-02-12 04:20:15
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1046..1119 456..381 130 70.1 Minus

BO08649.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:52:32 Download gff for BO08649.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30420-PB 762..1611 15..865 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:49:18 Download gff for BO08649.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30420-PA 1704..2553 15..865 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:44:00 Download gff for BO08649.3prime
Subject Subject Range Query Range Percent Splice Strand
CG44247-RA 1275..2125 14..865 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:49:58 Download gff for BO08649.3prime
Subject Subject Range Query Range Percent Splice Strand
CG44247-RA 1275..2125 14..865 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:49:58 Download gff for BO08649.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24878806..24879102 569..865 100 -> Minus
2R 24879164..24879717 14..568 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:44:00 Download gff for BO08649.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20766329..20766625 569..865 100 -> Minus
arm_2R 20766687..20767240 14..568 99   Minus

BO08649.5prime Sequence

769 bp (768 high quality bases) assembled on 2006-01-09

> BO08649.5prime
GAAGTTATCAGTCGACATGGACACCGCCGGAGACATGGATCACCTGGCCA
GTGTGTCCTTCGGCGACTTTGAGACAAAATCCCCAGAGGGCGACGTATCC
TGCTATCAGAACTTTCGGGCACAGACGGAACATGTTTCGCTAGACATTTC
TCTCGGGCAGAAGTCAGACACTCTATTTGCCGCCGACCAAACGCCCACGC
CTACGCGACTCATCAAGAACTGCGACGAGGTGGGTCTCTTCGAGGACCTG
CAGCACGTAAATCCATTTGACATTGGATTCCAGCAAGCAGCGGAGCGAAA
TGTCAGCGGCACTCCGAGTCGCCCAGAGGCTCGACCCAATGACGGTGAGT
CCCTGCACACGCCCCAGGTGTATCCCGTCGAGGCCCCCACCGTGGTATCA
GTTCCGTCTGAAAATCAGGTCCCACAAAGTGTCAGCTGCGGCGATATGGA
TGTGGACCAGCTTCTGGCCACGACAGTTACCTCGCCTTCCAAAGCCAGTC
AAGATGGTCCGCCGCCGCTGCAGTTGATCCAGCCCCAGGTCCTAACATGG
GTGCTGCCTGCGCAGTCAGTTCCCATTTCCATCGCTACAGTTGATTGTAA
CAGAAACAGGGTGAAGCCGACTGGTGCCATTCATCCCTTCATACTGCCGA
AACCCACTGCGAAAGAATTAAACAAGACCAGTAAAAGACCCGAGCCTATT
TTGGTCAGTTGCAACCCACCTAATAACGAGCCCAGTAGCGCCAGTCTGAC
GCCCACCTCACAGCTGCCC

BO08649.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:28:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG30420-PA 2553 Atf-2-RA 1..753 17..769 3765 100 Plus
CG30420-PC 1146 Atf-2-RC 1..753 17..769 3765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:08:19
Subject Length Description Subject Range Query Range Score Percent Strand
Atf-2-RA 1349 CG44246-RA 100..855 14..769 3780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:08:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24870207..24870962 14..769 3780 100 Plus
Blast to na_te.dros performed on 2015-02-02 10:08:15 has no hits.

BO08649.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:52:33 Download gff for BO08649.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30420-PC 1..753 17..769 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:49:19 Download gff for BO08649.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30420-PC 1..753 17..769 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:26:51 Download gff for BO08649.5prime
Subject Subject Range Query Range Percent Splice Strand
Atf-2-RA 97..855 8..769 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:36:55 Download gff for BO08649.5prime
Subject Subject Range Query Range Percent Splice Strand
Atf-2-RA 97..855 8..769 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:36:55 Download gff for BO08649.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24870204..24870962 8..769 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:26:51 Download gff for BO08649.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20757727..20758485 8..769 99   Plus

BO08649.complete Sequence

2584 bp assembled on 2008-08-14

GenBank Submission: FJ631265

> BO08649.complete
GAAGTTATCAGTCGACATGGACACCGCCGGAGACATGGATCACCTGGCCA
GTGTGTCCTTCGGCGACTTTGAGACAAAATCCCCAGAGGGCGACGTATCC
TGCTATCAGAACTTTCGGGCACAGACGGAACATGTTTCGCTAGACATTTC
TCTCGGGCAGAAGTCAGACACTCTATTTGCCGCCGACCAAACGCCCACGC
CTACGCGACTCATCAAGAACTGCGACGAGGTGGGTCTCTTCGAGGACCTG
CAGCACGTAAATCCATTTGACATTGGATTCCAGCAAGCAGCGGAGCGAAA
TGTCAGCGGCACTCCGAGTCGCCCAGAGGCTCGACCCAATGACGGTGAGT
CCCTGCACACGCCCCAGGTGTATCCCGTCGAGGCCCCCACCGTGGTATCA
GTTCCGTCTGAAAATCAGGTCCCACAAAGTGTCAGCTGCGGCGATATGGA
TGTGGACCAGCTTCTGGCCACGACAGTTACCTCGCCTTCCAAAGCCAGTC
AAGATGGTCCGCCGCCGCTGCAGTTGATCCAGCCCCAGGTCCTAACATGG
GTGCTGCCTGCGCAGTCAGTTCCCATTTCCATCGCTACAGTTGATTGTAA
CAGAAACAGGGTGAAGCCGACTGGTGCCATTCATCCCTTCATACTGCCGA
AACCCACTGCGAAAGAATTAAACAAGACCAGTAAAAGACCCGAGCCTATT
TTGGTCAGTTGCAACCCACCTAATAACGAGCCCAGTAGCGCCAGTCTGAC
GCCCACCTCACAGCTGCCCATCAAGGAGCGATTGAAGGCCATTATCCACA
GCAATAATAACAGACGAAGTTTCTCCACACCGCCCAAGGCTGCGAAAGCA
AAGGATCGCAGTCGGGACGAGGATTGTATGGAGCGACGAAGAGCAGCAGC
CTCTCGTTACCGTAACAAGATGCGAAACGAGCATAAGGACCTCATCAAAC
AGAACGCCCAGCTGCAGCAGGAGAATCAAGAACTGCACGAAAGAATTTCC
AGATTAGAAAAGGAACTGCAGCAGCACAGGAGTCACAGCAGCTTAGCTGG
CGGATTGCGCCGCCGACCCATTCAGCCGCCTGTGATGGATCCGCAGAGTG
AGCAAGAGTATGCTTTTCTGGCCCAGATGATGGAGCAGTATGCCCGCCGT
CGGCTGCAGCAGCAGTTCGACCAACAGCTGCACGAAATCAACCTGAAGAT
GGATCGTCAGCGGCAGCTCTTGGAGCAGGAGCGGTACCGCCAGCGGCAGC
AGGAGCTCCAGGTACAGCGCGAGGCGGAGGAGGACTACGAGTCCAACGGA
AACAACCTGAACCAGCAGTACGACCAGTACGACAACGCGGAGGCAGAGGC
CAGCTACGGCAGTCCGATGGAGGCAGTCTCTGATCTCCAAAGTCCTCCAT
TGTACCTGCCTCGCCTGCCCAACCTACCACCCTTGCCCAGCCTTCCGAAT
CGGCCCAGCCTGGGCAACTCCCCGAACAGGAACAGTGTGCTCCGCGAACG
GATTCCCTTTGCTGTAGGTCCCAGCGACGCTCGCTTCTTTGACAACCCGA
ACGACCCTTCGGGGGAGCTGGATTCCCGGGCGCTGGAGGACTACGAGGAG
TATGCTCCCATTGAGCCCACAACCGAAGTAGCCACCACCGCCAGTAAGAC
CAAGATCGATACGCCAGTACCGGCTCCCGTGCCCGTTGAGCCGCCCAAAC
TGCTTGACGCCGCCAACACCAACTTCCACCGCATCAATCCCCAGTCCGCC
GCCGCCGCAGCCGTGGCGGGAGTGAATATTCCCCAGAGCAAAGAACAACC
ACCCCATGAACTTAACGCACTGATCAACAAGCTGCAAAAGCAAAGCAAAG
CGCCCTCTCATTTGACGCTGGTCAACGGAGGTGATTCCAGTCAGGAGCAG
ATTGTGCTGCGCCAGCACCTGGGCATGAACAGCGAGATGGGGGTGTACAT
AGTGGCCCTAATAGCGGGGGTTAGTGCAGCGGTGACCGTTGGGCTTCTTG
CCCTCGGAGTAACTTGGTTCCATAATCGACACAAGGCAGCAGCGGACGTG
GAATACCCTGCCTACGGCGTTACCGGGCCGAACAAGGATGTCTCGCCGTC
CGGTGACAGAAAGCTGGCCCAGAGCGCCCAAATGTACCACTACCAGCACC
AGAAGCAGCAGATCATCGCCATGGAGAACCAGGCCACGGATGGTAGCTGC
GGCATGTCGGACGTGGAGAGCGACGACGACAACGAGGAGGGCGACTACAC
GGTGTACGAGTGCCCCGGCCTGGCGCCCACTGGTGAGATGGAGGTGAAGA
ATCCGCTCTTCCTGGACGAGACGCCGGCCACGCCGTCAAACAACCTGTCG
TCCCAAACCGCTGGAGCTGCCAATGCGGCAGCAGCGACCAATAACAACAT
CACGCAGGCTACCCCCCAGCAGCCGGCCACCCTGAAGAAGGGAACGGTCA
AGCCGAACATAAATCTCCTGAACGCAACGGGCACTGCAGCAGCAGCAGCT
TCAGCCGCATCAGCAGCCTCAGCGACCGGAGGGGAGGAGCCCAAGCAGAA
GCGCAAGAGCAAGAAGGCAAGCTTTCTAGACCAT

BO08649.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:25:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG44247-RB 1611 CG44247-PB 94..1608 1052..2566 7575 100 Plus
CG44247-RA 1611 CG44247-PA 94..1608 1052..2566 7575 100 Plus
Atf-2-RA 1146 CG44246-PA 1..1036 17..1052 5180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG44247-RB 3629 CG44247-RB 607..2121 1052..2566 7575 100 Plus
CG44247-RA 2696 CG44247-RA 607..2121 1052..2566 7575 100 Plus
Atf-2-RA 1349 CG44246-RA 100..1138 14..1052 5195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:25:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24870207..24871246 14..1053 5200 100 Plus
2R 25286936 2R 24878138..24879104 1052..2018 4835 100 Plus
2R 25286936 2R 24879163..24879713 2016..2566 2755 100 Plus
Blast to na_te.dros performed 2014-11-27 01:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1046..1119 2129..2204 130 70.1 Plus
Dmir\worf 4174 Dmir\worf WORF 4174bp Derived from AY144572. 639..744 1659..1764 124 61.1 Plus

BO08649.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:43:16 Download gff for BO08649.complete
Subject Subject Range Query Range Percent Splice Strand
Atf-2-RA 138..2697 8..2571 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:43 Download gff for BO08649.complete
Subject Subject Range Query Range Percent Splice Strand
CG44247-RA 607..2121 1052..2568 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:36 Download gff for BO08649.complete
Subject Subject Range Query Range Percent Splice Strand
Atf-2-RA 144..2693 17..2568 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:25:21 Download gff for BO08649.complete
Subject Subject Range Query Range Percent Splice Strand
CG44247-RA 607..2121 1052..2568 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:25:21 Download gff for BO08649.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24870210..24871245 17..1052 100 -> Plus
2R 24878139..24879102 1053..2016 100 -> Plus
2R 24879164..24879713 2017..2568 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:43 Download gff for BO08649.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20757733..20758768 17..1052 100 -> Plus
arm_2R 20765662..20766625 1053..2016 100 -> Plus
arm_2R 20766687..20767236 2017..2568 99   Plus

BO08649.pep Sequence

Translation from 16 to 2584

> BO08649.pep
MDTAGDMDHLASVSFGDFETKSPEGDVSCYQNFRAQTEHVSLDISLGQKS
DTLFAADQTPTPTRLIKNCDEVGLFEDLQHVNPFDIGFQQAAERNVSGTP
SRPEARPNDGESLHTPQVYPVEAPTVVSVPSENQVPQSVSCGDMDVDQLL
ATTVTSPSKASQDGPPPLQLIQPQVLTWVLPAQSVPISIATVDCNRNRVK
PTGAIHPFILPKPTAKELNKTSKRPEPILVSCNPPNNEPSSASLTPTSQL
PIKERLKAIIHSNNNRRSFSTPPKAAKAKDRSRDEDCMERRRAAASRYRN
KMRNEHKDLIKQNAQLQQENQELHERISRLEKELQQHRSHSSLAGGLRRR
PIQPPVMDPQSEQEYAFLAQMMEQYARRRLQQQFDQQLHEINLKMDRQRQ
LLEQERYRQRQQELQVQREAEEDYESNGNNLNQQYDQYDNAEAEASYGSP
MEAVSDLQSPPLYLPRLPNLPPLPSLPNRPSLGNSPNRNSVLRERIPFAV
GPSDARFFDNPNDPSGELDSRALEDYEEYAPIEPTTEVATTASKTKIDTP
VPAPVPVEPPKLLDAANTNFHRINPQSAAAAAVAGVNIPQSKEQPPHELN
ALINKLQKQSKAPSHLTLVNGGDSSQEQIVLRQHLGMNSEMGVYIVALIA
GVSAAVTVGLLALGVTWFHNRHKAAADVEYPAYGVTGPNKDVSPSGDRKL
AQSAQMYHYQHQKQQIIAMENQATDGSCGMSDVESDDDNEEGDYTVYECP
GLAPTGEMEVKNPLFLDETPATPSNNLSSQTAGAANAAAATNNNITQATP
QQPATLKKGTVKPNINLLNATGTAAAAASAASAASATGGEEPKQKRKSKK
ASFLDH

BO08649.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:04:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG44247-PB 536 CG44247-PB 28..536 342..850 2607 99.4 Plus
CG44247-PA 536 CG44247-PA 28..536 342..850 2607 99.4 Plus
Atf-2-PA 381 CG44246-PA 1..355 1..355 1797 97.7 Plus