Clone Sequence Records
BO08650.3prime Sequence
834 bp (772 high quality bases) assembled on 2006-01-09
> BO08650.3prime
ATGGTCTAGAAAGCTTGCTTCCAGCTGCTCTAAAAAATTGGGCGACTTGA
AGTACTCGGGCACGGGATCGTCCATGCGCGAGATGATCTTGTATATGGAC
TTCTTCCACGACTGCTCGGTGTCTTTGCCACCCTGTATTGCACGGAAGAA
CTCCCGCAGAGTCGATTCGACCACGAAGCGGAAATTCTGGGGTACCTCAA
TGTGGTTATTGCGATTGTAGTGCAAATTGAGCACGCGATACAATTCACTA
TCTCCAGCAATCAACAGATCATCGGGTGTCTTGATGCCTTCGGTGACAGC
TTGTCGTGCATATTTCTCCATTTGTATGTAGTAGAATTCTCGGAAGTTCG
AGAACCATTTCACCAATTGTGCTGTGTTGTTCTTGTTGAACTTGATGTCC
GGGAAGTACATCTTGAGCACCGCGGAGCTGGGATAGCGCACCCAGAAGAA
CATCAGCTTGGCCTTGCGCAGGTGCATCGGTGTCAATGTAGAAGAAGTAG
GAGCCATGCCGTCAAACTGCATGTCGGCCGAGTTGCACTCGGACTGGCGA
TCCTGGGCGTCCATGACGGCCCGCAGGCAGGTCTTGTAGTCCGGCGATCC
GCCGTGATGGGCGGCGGCCAGCAAGGCGGGATGGAGCATCGACGGCGGGT
GGGGCAGCGGCGGCGAGTCGCGCGAGTCCATCAGAGCGCCCAAGCTGCCC
GGCGGACTGGAGGACAGCTGCATGGACTGGTGGTGCGGGTGGTGCTGCTG
GTGGTGCTGATGGAGCTGGGCCGCCCTTGCCTGGCCAGCGGCTGCGTGCG
GATTGAAGAACGGCGAGTACGGTGAAAAGACCTT
BO08650.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:28:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17228-PD | 4125 | pros-RD | 3307..4122 | 834..19 | 4055 | 99.8 | Minus |
| CG17228-PA | 4608 | pros-RA | 3790..4605 | 834..19 | 4055 | 99.8 | Minus |
| CG17228-PC | 4212 | pros-RC | 3733..4209 | 495..19 | 2385 | 100 | Minus |
| CG17228-PC | 4212 | pros-RC | 3307..3645 | 834..496 | 1670 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:52:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pros-RL | 5526 | CG17228-RL | 3609..4424 | 834..19 | 4065 | 99.9 | Minus |
| pros-RK | 7890 | CG17228-RK | 4092..4907 | 834..19 | 4065 | 99.9 | Minus |
| pros-RI | 23486 | CG17228-RI | 7138..7953 | 834..19 | 4065 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:51:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11376879..11377217 | 834..496 | 1680 | 99.7 | Minus |
| 3R | 32079331 | 3R | 11391916..11392094 | 197..19 | 895 | 100 | Minus |
| 3R | 32079331 | 3R | 11378035..11378189 | 495..341 | 775 | 100 | Minus |
| 3R | 32079331 | 3R | 11391528..11391676 | 341..193 | 745 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 11:51:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1580 | 768..727 | 111 | 73.8 | Minus |
BO08650.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:52:34 Download gff for
BO08650.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pros-PA | 3790..4608 | 15..834 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:49:21 Download gff for
BO08650.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17228-PA | 3790..4608 | 15..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:33:55 Download gff for
BO08650.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pros-RI | 7138..7957 | 14..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:57:33 Download gff for
BO08650.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pros-RI | 7138..7957 | 14..834 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:57:33 Download gff for
BO08650.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11391918..11392098 | 14..195 | 98 | | Minus |
| 3R | 11376879..11377217 | 496..834 | 99 | -> | Minus |
| 3R | 11378035..11378189 | 341..495 | 100 | -> | Minus |
| 3R | 11391529..11391673 | 196..340 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:33:55 Download gff for
BO08650.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7202601..7202939 | 496..834 | 99 | -> | Minus |
| arm_3R | 7203757..7203911 | 341..495 | 100 | -> | Minus |
| arm_3R | 7217251..7217395 | 196..340 | 100 | -> | Minus |
| arm_3R | 7217640..7217820 | 14..195 | 98 | | Minus |
BO08650.5prime Sequence
832 bp (765 high quality bases) assembled on 2006-01-09
> BO08650.5prime
GAAGTTATCAGTCGACATGAGTAGCGCTGCCGCGGCTGCTGCGGGTGCCG
CTGGTGGAGGAGCCCTGTTCCAACCACAATCGGTCAGCACGGCCAATAGC
AGTAGTAGTAACAATAACAATTCAAGCACACCGGCTGCTCTTGCCACCCA
TTCGCCCACGAGCAACTCACCAGTTTCGGGCGCCAGTTCGGCATCGTCCT
TGTTGACGGCCGCCTTTGGCAACCTGTTTGGTGGCTCCTCGGCCAAGATG
CTGAACGAGCTGTTTGGCCGCCAGATGAAGCAGGCCCAGGACGCAACGAG
TGGCCTGCCCCAGAGTTTGGACAACGCCATGCTGGCCGCCGCCATGGAGA
CGGCCACCAGTGCCGAGCTGTTGATCGGCAGCCTCAATTCCACGTCCAAG
TTGCTGCAGCAGCAGCACAATAACAACAGCATTGCTCCCGCCAATAGCAC
GCCCATGAGCAATGGCACAAATGCATCGATCTCGCCGGGATCGGCCCACA
GTTCCAGTCACTCGCATCAGGGAGTCTCGCCCAAAGGAAGTCGCAGGGTG
TCGGCCTGCAGTGATCGCTCCTTGGAGGCGGCAGCTGCTGATGTTGCTGG
TGGCTCGCCGCCACGAGCGGCATCGGTGAGCTCGCTGAACGGAGGAGCCA
GCAGTGGGGAGCAGCACCAGTCTCAGTTGCAACACGACCTGGTGGCACAT
CACATGCTGCGCAATATACTGCAGGGCAAGAAGGAGCTGATGCAACTGGA
TCAGGAGCTGCGCACCGCCATGCAGCAGCAGCAACAGCAGCTGCAGGAGA
AAGAGCAACTGCACTCCAAGCTTAACAATAAT
BO08650.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:28:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17228-PD | 4125 | pros-RD | 1..816 | 17..832 | 4055 | 99.8 | Plus |
| CG17228-PC | 4212 | pros-RC | 1..816 | 17..832 | 4055 | 99.8 | Plus |
| CG17228-PA | 4608 | pros-RA | 1..816 | 17..832 | 4055 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:54:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pros-RM | 22289 | CG17228-RM | 2547..3363 | 16..832 | 4070 | 99.9 | Plus |
| pros-RL | 5526 | CG17228-RL | 302..1118 | 16..832 | 4070 | 99.9 | Plus |
| pros-RK | 7890 | CG17228-RK | 302..1118 | 16..832 | 4070 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:54:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11373089..11373905 | 16..832 | 4070 | 99.9 | Plus |
Blast to na_te.dros performed 2015-02-11 10:54:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6672..6891 | 598..813 | 206 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6915 | 660..813 | 162 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2426 | 729..831 | 158 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6864 | 660..807 | 158 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6837 | 726..813 | 156 | 68.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6715..6816 | 713..813 | 155 | 67.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6944 | 649..812 | 148 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2344..2497 | 660..813 | 139 | 56.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1062..1143 | 732..813 | 139 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2517..2656 | 662..795 | 137 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2434 | 743..830 | 135 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6691..6777 | 745..830 | 135 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2410 | 725..830 | 133 | 64.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1048..1131 | 731..813 | 129 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6798 | 742..813 | 124 | 68.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1083..1163 | 729..812 | 124 | 64.3 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3232..3343 | 710..822 | 120 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1527..1615 | 743..829 | 115 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6777 | 773..813 | 114 | 77.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1122 | 746..813 | 114 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2362 | 762..813 | 113 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2594..2635 | 772..813 | 111 | 73.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2813..2870 | 742..799 | 110 | 65.5 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 115..175 | 735..796 | 109 | 66.1 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9145..9205 | 735..796 | 109 | 66.1 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3260..3322 | 751..813 | 108 | 63.5 | Plus |
BO08650.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:52:35 Download gff for
BO08650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pros-PA | 1..816 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:49:22 Download gff for
BO08650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17228-PA | 1..816 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:01:30 Download gff for
BO08650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pros-RK | 302..1118 | 16..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:48:58 Download gff for
BO08650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pros-RK | 302..1118 | 16..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:48:58 Download gff for
BO08650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11373089..11373905 | 16..832 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:01:30 Download gff for
BO08650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7198811..7199627 | 16..832 | 99 | | Plus |
BO08650.complete Sequence
4156 bp assembled on 2008-11-10
GenBank Submission: KX800087
> BO08650.complete
GAAGTTATCAGTCGACATGAGTAGCGCTGCCGCGGCTGCTGCGGGTGCCG
CTGGTGGAGGAGCCCTGTTCCAACCACAATCGGTCAGCACGGCCAATAGC
AGTAGTAGTAACAATAACAATTCAAGCACACCGGCTGCTCTTGCCACCCA
TTCGCCCACGAGCAACTCACCAGTTTCGGGCGCCAGTTCGGCATCGTCCT
TGTTGACGGCCGCCTTTGGCAACCTGTTTGGTGGCTCCTCGGCCAAGATG
CTGAACGAGCTGTTTGGCCGCCAGATGAAGCAGGCCCAGGACGCAACGAG
TGGCCTGCCCCAGAGTTTGGACAACGCCATGCTGGCCGCCGCCATGGAGA
CGGCCACCAGTGCCGAGCTGTTGATCGGCAGCCTCAATTCCACGTCCAAG
TTGCTGCAGCAGCAGCACAATAACAACAGCATTGCTCCCGCCAATAGCAC
GCCCATGAGCAATGGCACAAATGCATCGATCTCGCCGGGATCGGCCCACA
GTTCCAGTCACTCGCATCAGGGAGTCTCGCCCAAAGGAAGTCGCAGGGTG
TCGGCCTGCAGTGATCGCTCCTTGGAGGCGGCAGCTGCTGATGTTGCTGG
TGGCTCGCCGCCACGAGCGGCATCGGTGAGCTCGCTGAACGGAGGAGCCA
GCAGTGGGGAGCAGCACCAGTCTCAGTTGCAACACGACCTGGTGGCACAT
CACATGCTGCGCAATATACTGCAGGGCAAGAAGGAGCTGATGCAACTGGA
TCAGGAGCTGCGCACCGCCATGCAGCAGCAGCAACAGCAGCTGCAGGAGA
AGGAGCAACTGCACTCCAAGCTTAACAATAATAATAACAACAATATTGCT
GCCACCGCCAACAACAATAACAACACCACAATGGAGAGTATCAATCTGAT
CGACGATTCGGAAATGGCTGACATCAAGATCAAGAGTGAGCCCCAGACGG
CTCCGCAGCCACAGCAATCGCCGCACGGAAGCAGCCACAGCAGCCGAAGT
GGGAGCGGCAGTGGGAGCCACAGCAGCATGGCCAGCGATGGCAGCCTGCG
ACGCAAGTCCTCCGACTCCCTGGACAGCCACGGGGCGCAGGACGATGCGC
AGGACGAGGAAGATGCTGCGCCCACTGGCCAGAGATCCGAGAGCAGGGCT
CCGGAGGAGCCACAGCTGCCCACCAAAAAAGAATCCGTGGACGATATGCT
TGACGAGGTGGAGCTCCTGGGTCTGCACTCCCGCGGATCCGATATGGATA
GCCTGGCCTCGCCCAGTCACTCGGACATGATGCTGCTGGACAAGGACGAT
GTCCTGGACGAGGACGACGACGATGATTGCGTGGAGCAGAAAACATCCGG
CAGCGGATGTCTCAAGAAACCCGGCATGGACTTGAAGCGCGCTCGCGTCG
AGAACATCGTGTCGGGAATGCGATGCAGTCCATCCTCCGGATTAGCGCAG
GCAGGACAACTGCAGGTAAATGGTTGTAAGAAGCGCAAGCTCTACCAGCC
CCAGCAACACGCCATGGAGCGTTATGTGGCCGCCGCAGCTGGTCTGAATT
TCGGCCTCAATCTGCAGAGCATGATGCTCGACCAGGAGGACAGTGAGTCC
AATGAGCTGGAGTCCCCGCAAATCCAACAGAAGCGTGTGGAGAAAAATGC
GCTCAAGTCCCAGCTGCGATCCATGCAGGAGCAGCTCGCGGAGATGCAGC
AGAAATATGTGCAGCTGTGCTCGCGCATGGAGCAGGAATCCGAGTGCCAG
GAACTTGACCAGGACCAGGATGTGGAACAAGAACAAGAGCCGGACAATGG
CAGCAGTGATCATATCGAGCTGTCGCCCTCGCCCACTTTGACCGGAGATG
GTGACGTTAGTCCCAACCACAAGGAGGAAACTGGGCAGGAACGACCTGGT
TCCAGCTCACCCTCACCATCGCCCCTAAAACCCAAGACATCGCTGGGCGA
GAGCAGCGACTCAGGCGCTAACATGCTATCCCAGATGATGAGCAAGATGA
TGTCCGGCAAGCTGCACAATCCACTGGTGGGTGTGGGTCATCCCGCCCTG
CCTCAAGGATTTCCTCCACTGCTCCAGCACATGGGCGACATGTCGCACGC
AGCCGCCATGTACCAGCAGTTCTTCTTCGAGCAGGAGGCGCGCATGGCCA
AGGAAGCCGCCGAGCAGCAGCAGCAACAGCAGCAACAGCAACAACAGCAG
CAGCAGCAACAGCAGCAGGAGCAACAGCGCCGCTTCGAGCAGGAGCAACA
AGAGCAGCAGCGACGCAAGGAGGAGCAGCAACAGCAGATCCAGCGCCAGC
AGCAGCATCTGCAACAGCTGCAGCAACAGCAAATGGAGCAGCAACATGTG
GCCACTGCCGCCCCCAGGCCGCAGATGCACCACCCAGCGCCCGCCCGCCT
GCCCACACGAATGGGCGGTGCTGCTGGCCACACGGCCCTCAAGTCCGAAC
TGTCGGAAAAGTTCCAAATGCTGCGCGCCAACAACAATAGCTCAATGATG
CGCATGTCGGGCACGGACCTGGAGGGACTGGCCGATGTGCTCAAGTCCGA
GATCACCACCTCGCTGTCCGCTCTGGTGGACACCATTGTGACCCGCTTCG
TCCACCAACGGCGGCTGTTCAGCAAGCAAGCGGACTCCGTGACCGCGGCT
GCCGAGCAGCTGAACAAGGACCTGCTGCTGGCTTCGCAGATCCTCGACCG
GAAGTCACCGCGCACCAAGGTGGCGGACAGGCCCCAGAACGGACCCACGC
CCGCAACACAATCAGCGGCTGCCATGTTCCAGGCGCCCAAAACGCCACAG
GGCATGAATCCGGTGGCCGCCGCCGCGCTCTACAACTCGATGACCGGACC
CTTCTGCCTGCCGCCCGATCAGCAGCAGCAGCAACAGACCGCCCAGCAGC
AACAGTCCGCCCAGCAGCAGCAGCAGAGCTCGCAGCAGACACAACAGCAG
CTGGAGCAGAACGAGGCCCTCAGCCTGGTGGTGACACCAAAGAAGAAGCG
CCATAAGGTGACCGATACGCGCATCACGCCGCGCACCGTCAGCCGCATTC
TTGCCCAGGATGGCGTTGTGCCGCCCACCGGAGGCCCACCGTCAACCCCC
CAGCAGCAGCAACAGCAGCAGCAACAGCAACAGCAGCAGCAACAACAGCA
GCAGCAACAGGCGTCGAACGGCGGCAACAGCAATGCCACGCCCGCCCAGA
GTCCGACGAGGAGCAGTGGAGGAGCCGCATACCATCCGCAACCACCGCCA
CCACCACCACCCATGATGCCCGTGTCCTTGCCCACCTCCGTGGCCATACC
TAATCCCTCGCTGCACGAGTCCAAGGTCTTTTCACCGTACTCGCCGTTCT
TCAATCCGCACGCAGCCGCTGGCCAGGCAACGGCGGCCCAGCTCCATCAG
CACCACCAGCAGCACCACCCGCACCACCAGTCCATGCAGCTGTCCTCCAG
TCCGCCGGGCAGCTTGGGCGCTCTGATGGACTCGCGCGACTCGCCGCCGC
TGCCCCACCCGCCGTCGATGCTCCATCCCGCCTTGCTGGCCGCCGCCCAT
CACGGCGGATCGCCGGACTACAAGACCTGCCTGCGGGCCGTCATGGACGC
CCAGGATCGCCAGTCCGAGTGCAACTCGGCCGACATGCAGTTTGACGGCA
TGGCTCCTACTTCTTCTACATTGACACCGATGCACCTGCGCAAGGCCAAG
CTGATGTTCTTCTGGGTGCGCTATCCCAGCTCCGCGGTGCTCAAGATGTA
CTTCCCGGACATCAAGTTCAACAAGAACAACACAGCACAATTGGTGAAAT
GGTTCTCGAACTTCCGAGAATTCTACTACATACAAATGGAGAAATATGCA
CGACAAGCTGTCACCGAAGGCATCAAGACACCCGATGATCTGTTGATTGC
TGGAGATAGTGAATTGTATCGCGTGCTCAATTTGCACTACAATCGCAATA
ACCACATTGAGGTACCCCAGAATTTCCGCTTCGTGGTCGAATCGACTCTG
CGGGAGTTCTTCCGTGCAATACAGGGTGGCAAAGACACCGAGCAGTCGTG
GAAGAAGTCCATATACAAGATCATCTCGCGCATGGACGATCCCGTGCCCG
AGTACTTCAAGTCGCCCAATTTTTTAGAGCAGCTGGAAGCAAGCTTTCTA
GACCAT
BO08650.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:15:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pros-RH | 5025 | CG17228-PH | 900..5022 | 16..4138 | 20615 | 100 | Plus |
| pros-RL | 4125 | CG17228-PL | 1..4122 | 17..4138 | 20610 | 100 | Plus |
| pros-RM | 5112 | CG17228-PM | 900..4545 | 16..3661 | 18230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pros-RL | 5526 | CG17228-RL | 302..4424 | 16..4138 | 20615 | 100 | Plus |
| pros-RH | 22169 | CG17228-RH | 2514..6636 | 16..4138 | 20615 | 100 | Plus |
| pros-RM | 22289 | CG17228-RM | 2547..6192 | 16..3661 | 18230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11373089..11375838 | 16..2765 | 13750 | 100 | Plus |
| 3R | 32079331 | 3R | 11376319..11377217 | 2763..3661 | 4495 | 100 | Plus |
| 3R | 32079331 | 3R | 11391916..11392094 | 3960..4138 | 895 | 100 | Plus |
| 3R | 32079331 | 3R | 11378035..11378189 | 3662..3816 | 775 | 100 | Plus |
| 3R | 32079331 | 3R | 11391528..11391676 | 3816..3964 | 745 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 08:15:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6715..6962 | 713..977 | 229 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..7085 | 660..1018 | 220 | 56.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2539 | 762..989 | 201 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6916 | 726..894 | 195 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6691..6841 | 745..894 | 194 | 59.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2489 | 729..894 | 185 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2464 | 725..878 | 181 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6955 | 773..996 | 160 | 56.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2813..2950 | 742..878 | 156 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6915 | 660..813 | 153 | 61.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1048..1158 | 731..842 | 152 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2344..2677 | 660..998 | 150 | 52.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6944 | 649..812 | 148 | 58.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1062..1143 | 732..813 | 148 | 67.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1153 | 746..843 | 140 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1664 | 776..895 | 137 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1527..1631 | 743..845 | 132 | 62.3 | Plus |
BO08650.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:50:04 Download gff for
BO08650.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pros-RG | 1103..5229 | 16..4143 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:08 Download gff for
BO08650.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pros-RH | 2515..6636 | 17..4140 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:43 Download gff for
BO08650.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pros-RG | 1104..5225 | 17..4140 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:14:11 Download gff for
BO08650.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pros-RH | 2515..6636 | 17..4140 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:14:11 Download gff for
BO08650.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11373090..11375838 | 17..2765 | 100 | -> | Plus |
| 3R | 11376322..11377217 | 2766..3661 | 100 | -> | Plus |
| 3R | 11378035..11378189 | 3662..3816 | 100 | -> | Plus |
| 3R | 11391529..11391673 | 3817..3961 | 100 | -> | Plus |
| 3R | 11391918..11392094 | 3962..4140 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:08 Download gff for
BO08650.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7198812..7201560 | 17..2765 | 100 | -> | Plus |
| arm_3R | 7202044..7202939 | 2766..3661 | 100 | -> | Plus |
| arm_3R | 7203757..7203911 | 3662..3816 | 100 | -> | Plus |
| arm_3R | 7217251..7217395 | 3817..3961 | 100 | -> | Plus |
| arm_3R | 7217640..7217816 | 3962..4140 | 98 | | Plus |
BO08650.pep Sequence
Translation from 16 to 4156
> BO08650.pep
MSSAAAAAAGAAGGGALFQPQSVSTANSSSSNNNNSSTPAALATHSPTSN
SPVSGASSASSLLTAAFGNLFGGSSAKMLNELFGRQMKQAQDATSGLPQS
LDNAMLAAAMETATSAELLIGSLNSTSKLLQQQHNNNSIAPANSTPMSNG
TNASISPGSAHSSSHSHQGVSPKGSRRVSACSDRSLEAAAADVAGGSPPR
AASVSSLNGGASSGEQHQSQLQHDLVAHHMLRNILQGKKELMQLDQELRT
AMQQQQQQLQEKEQLHSKLNNNNNNNIAATANNNNNTTMESINLIDDSEM
ADIKIKSEPQTAPQPQQSPHGSSHSSRSGSGSGSHSSMASDGSLRRKSSD
SLDSHGAQDDAQDEEDAAPTGQRSESRAPEEPQLPTKKESVDDMLDEVEL
LGLHSRGSDMDSLASPSHSDMMLLDKDDVLDEDDDDDCVEQKTSGSGCLK
KPGMDLKRARVENIVSGMRCSPSSGLAQAGQLQVNGCKKRKLYQPQQHAM
ERYVAAAAGLNFGLNLQSMMLDQEDSESNELESPQIQQKRVEKNALKSQL
RSMQEQLAEMQQKYVQLCSRMEQESECQELDQDQDVEQEQEPDNGSSDHI
ELSPSPTLTGDGDVSPNHKEETGQERPGSSSPSPSPLKPKTSLGESSDSG
ANMLSQMMSKMMSGKLHNPLVGVGHPALPQGFPPLLQHMGDMSHAAAMYQ
QFFFEQEARMAKEAAEQQQQQQQQQQQQQQQQQQEQQRRFEQEQQEQQRR
KEEQQQQIQRQQQHLQQLQQQQMEQQHVATAAPRPQMHHPAPARLPTRMG
GAAGHTALKSELSEKFQMLRANNNSSMMRMSGTDLEGLADVLKSEITTSL
SALVDTIVTRFVHQRRLFSKQADSVTAAAEQLNKDLLLASQILDRKSPRT
KVADRPQNGPTPATQSAAAMFQAPKTPQGMNPVAAAALYNSMTGPFCLPP
DQQQQQQTAQQQQSAQQQQQSSQQTQQQLEQNEALSLVVTPKKKRHKVTD
TRITPRTVSRILAQDGVVPPTGGPPSTPQQQQQQQQQQQQQQQQQQQQAS
NGGNSNATPAQSPTRSSGGAAYHPQPPPPPPPMMPVSLPTSVAIPNPSLH
ESKVFSPYSPFFNPHAAAGQATAAQLHQHHQQHHPHHQSMQLSSSPPGSL
GALMDSRDSPPLPHPPSMLHPALLAAAHHGGSPDYKTCLRAVMDAQDRQS
ECNSADMQFDGMAPTSSTLTPMHLRKAKLMFFWVRYPSSAVLKMYFPDIK
FNKNNTAQLVKWFSNFREFYYIQMEKYARQAVTEGIKTPDDLLIAGDSEL
YRVLNLHYNRNNHIEVPQNFRFVVESTLREFFRAIQGGKDTEQSWKKSIY
KIISRMDDPVPEYFKSPNFLEQLEASFLDH
BO08650.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:15:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pros-PL | 1374 | CG17228-PL | 1..1374 | 1..1374 | 7055 | 100 | Plus |
| pros-PH | 1674 | CG17228-PH | 301..1674 | 1..1374 | 7055 | 100 | Plus |
| pros-PM | 1703 | CG17228-PM | 301..1703 | 1..1374 | 7015 | 97.9 | Plus |
| pros-PJ | 1403 | CG17228-PJ | 1..1403 | 1..1374 | 7015 | 97.9 | Plus |
| pros-PK | 1535 | CG17228-PK | 1..1137 | 1..1141 | 4725 | 84.3 | Plus |
