Clone BO08655 Report

Search the DGRC for BO08655

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:86
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptCG9799-RA
Protein status:BO08655.pep: Imported from assembly
Sequenced Size:2800

Clone Sequence Records

BO08655.3prime Sequence

808 bp (794 high quality bases) assembled on 2006-01-09

> BO08655.3prime
ATGGTCTAGAAAGCTTGCGTGCGCAAAGTTTCGGAGAGCGGCCACAACTC
CAGTTCCATAGATGAGCTTCTCCTCCACACGCTGCCAAGCCTCCTGCTGC
ACCTGGGACACAGTGCGCAGCTCCTTTACCAAATCCGGGAACTCCGTCAA
CCCGAGACCGTGGGATCGCAAGAAGACGCTTAGATACGATTGAGCCAGCT
CAAAGTTCAGATTGGTTCCAAACATGAACTTAACGAGTTTGAGGAACTGC
AGCATGGCAAGGAGTGTTCCTCCAGCCTCCGGGTGCAGAGATTTGATCTC
AAAGTCAACCATCGATGGTCCTAGTTGGGTCAAGTGCGCCACAGCCGATG
CGAAGTCCAGGGAGTCAGCAGTTTCCTCCAGCAGCTGGCCAAAGGCAGTA
AGATTGTTGAGAGTAGAAGCCTTCCGAATCCGGGATTCATCCTCCTCCTT
CTGACCGTTCTCCACATCGAAGCGCAGTTCCAGTCCCGAAACCGTGGGCA
GGAAGAATGGGGCCTGTTTGGGAGCTTTTGGTGGTGCCTTGGGCTTGTTA
CGTTGCTTGATTAGCTCCAAATCCAATAGATTCTGCCAACGGGATGCAGC
CAACCCGGATAGCGTTATCAGTTCCTCGGACAGCTGCGTTGGAGTTTCGT
ACTTGGTGTCAACTAGCTCGCCGAGTTTTGACTCGTCCTCTTCGTCGATC
TCTAGCTCCTTCATGCCATCTTCCAGTTCCATGGCATCGCACACATTCGT
GGGCAATCCCACGTACGGAGCCGGCTCCAAAGGATCGATGGAGCGCAGGG
AAATCTGA

BO08655.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:28:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG9799-PA 2769 CG9799-RA 1977..2766 808..19 3950 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:24:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG9799-RA 2939 CG9799-RA 2085..2874 808..19 3950 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:24:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13385713..13386502 19..808 3950 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:24:36 has no hits.

BO08655.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:52:40 Download gff for BO08655.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9799-PA 1978..2769 18..807 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:49:30 Download gff for BO08655.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9799-PA 1978..2769 18..807 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:31:43 Download gff for BO08655.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9799-RA 2086..2881 9..807 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:45:32 Download gff for BO08655.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9799-RA 2086..2881 9..807 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:45:32 Download gff for BO08655.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13385706..13386501 9..807 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:31:43 Download gff for BO08655.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9211428..9212223 9..807 99   Plus

BO08655.5prime Sequence

841 bp (736 high quality bases) assembled on 2006-01-09

> BO08655.5prime
GAAGTTATCAGTCGACATGACGCATCTGCGGTCGGAGGATAAGCCACAGT
CGGAGGAGCGGAAGTCTGTGTTCAAGGAGAGCAGCTGCATCTTCCGGCGG
AATCGAGCCCTCGGCTATGTGAGCAACCAGGTTCCAGCAGTCACCCGCTA
CGTGCAGCGTCGTCGGGACACTTTGCTGATCACCTGCATCGGCAGATCTT
TTCAGGTGTACACCGCCAACCACTTTCGCCTGCTGCACGTTAGCGGATTG
CATCCGGACGAGATTACGGCTCTGGCCACGGATCGACTGCACACGTACAC
GGCGAGCAACAAGTGTATCTACGCCTGGCGGGCGGGCAAACACATCCGGC
ACGTGTACCGTGGCCACCAGAAAGATGTCCACCTCCTGCTGCCTTTTGGT
TCCAGTTTGATAGCCATCGATAGGCAGAATGTGTTAAAAGTGTGGAATAT
TTCAACCGAGGATGTCTATTTGGAAGTGCCCTTCCGGTCTGAGGAGTTCC
AGATCACAGCTGTGACCCATCCGCCCACGTACATCAATAAAATAGTACTA
GGCTCCCAGCAGGGCCAACTAAAGATCTTGAACATAAAGAAGAACAGTGT
GGTGTGCACTTTGAGTCACCACGACAGCAGGATCACCTGCATTGAACCGT
CCCCTGCTTTGGATGTCGTGGCCGTGGGACACGGGGATGGCACTATTATC
TTGCTTAACCTTAAGTTCGACGAGGTGCTTATGAGCTTCCAGCAGGATTG
GGGTCAGGTCACCAACCTTTCCTTCCGTACCGACGGCCCACCAATCCTTG
TGTCCGCCTGCAGCAATGGTTACATGGCCTTTCTGGAACCT

BO08655.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:28:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG9799-PA 2769 CG9799-RA 1..815 17..831 4075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:17:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG9799-RA 2939 CG9799-RA 109..932 17..841 4100 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:17:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13387787..13388601 831..17 4075 100 Minus
Blast to na_te.dros performed on 2015-02-10 03:17:37 has no hits.

BO08655.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:52:41 Download gff for BO08655.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9799-PA 1..824 17..841 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:49:31 Download gff for BO08655.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9799-PA 1..824 17..841 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:43:04 Download gff for BO08655.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9799-RA 102..932 9..841 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:15:05 Download gff for BO08655.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9799-RA 102..932 9..841 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:15:05 Download gff for BO08655.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13387778..13388608 9..841 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:43:04 Download gff for BO08655.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9213500..9214330 9..841 99   Minus

BO08655.complete Sequence

2800 bp assembled on 2008-08-14

GenBank Submission: FJ631266

> BO08655.complete
GAAGTTATCAGTCGACATGACGCATCTGCGGTCGGAGGATAAGCCACAGT
CGGAGGAGCGGAAGTCTGTGTTCAAGGAGAGCAGCTGCATCTTCCGGCGG
AATCGAGCCCTCGGCTATGTGAGCAACCAGGTTCCAGCAGTCACCCGCTA
CGTGCAGCGTCGTCGGGACACTTTGCTGATCACCTGCATCGGCAGATCTT
TTCAGGTGTACACCGCCAACCACTTTCGCCTGCTGCACGTTAGCGGATTG
CATCCGGACGAGATTACGGCTCTGGCCACGGATCGACTGCACACGTACAC
GGCGAGCAACAAGTGTATCTACGCCTGGCGGGCGGGCAAACACATCCGGC
ACGTGTACCGTGGCCACCAGAAAGATGTCCACCTCCTGCTGCCTTTTGGT
TCCAGTTTGATAGCCATCGATAGGCAGAATGTGTTAAAAGTGTGGAATAT
TTCAACCGAGGATGTCTATTTGGAAGTGCCCTTCCGGTCTGAGGAGTTCC
AGATCACAGCTGTGACCCATCCGCCCACGTACATCAATAAAATAGTACTA
GGCTCCCAGCAGGGCCAACTAAAGATCTTGAACATAAAGAAGAACAGTGT
GGTGTGCACTTTGAGTCACCACGACAGCAGGATCACCTGCATTGAACCGT
CCCCTGCTTTGGATGTCGTGGCCGTGGGACACGGGGATGGCACTATTATC
TTGCTTAACCTTAAGTTCGACGAGGTGCTTATGAGCTTCCAGCAGGATTG
GGGTCAGGTCACCAACCTTTCCTTCCGTACCGACGGCCCACCAATCCTTG
TGTCCGCCTGCAGCAATGGTTACATGGCCTTCTGGAACCTGGAGGAGCGC
AAGTTAGCCGGTCAGCTGCAAGCGCACGAGGAGTCGGTGACCACGGCCAT
TTGTCTGCCCAGCGAGCCCGTGGTCTTCACCACTTCACCAGACAATTCAA
TGAGGATGTTTGTTTTCGATATGCCAGATGGTGGTGCCAGACAGCTGAGG
ATCCGCGAGGGACACACAAAGCCGCCGTTTTGTATTCGCTACCACGGCAG
CTCGGGCGTATCCATTCTCTCTTCGGGCGAGGACAGCACCATGAGAGTCT
TCTCCACCATTTCCGAATCGCTGAACAAGAGCATGGGCAGGGCTACCTAC
AATCCAAAAGCCACAAAGAAGAAGAATCGCTTTGAGCACGATAAGTTTGG
AATGCCACCCATACTGGAGTTCACATCGGATACGGCTCGCGAAAAGGAGT
GGGATAACATCGCTGCCATCCATGCGGGCGTTATTCAGACGACAACCTGG
TCGTTTGGCAAGAACCGTATGGGCGAGCACCGCCTGGTTCCGAAACAGTT
CCAAAACAGCAACCGCACCAACTTCCAGAACGAGACCACATGCATTGTGC
TGACGCACTGTGGCAACTTTGTGATCATTGGCTATAGCAGTGGCGACATT
GAGCGCTTTAATATCCAGTCTGGACTCCATCGGGCTACCTATGGCTCTCC
AGCCCACAAGATGGCAGTACGCGGCTTGGCCAGCGACAATCTTAACCAAA
CCGTCATCTCTGGCTGTTCGGAAGGCTTGCTCAAGTTCTGGTCATTCAAA
GGAAAGGTTGACAAGCCCTTAGCGACTCTACGCCTGGCAGATGGAATCGC
CCTGATTCGACAGCACCGAGAGAGCTCCATGCTGGCCATTGGTCTGGAAA
CATTCAAGATTTTTGTCGTAGACATGCACACGAGGGTCATTGTTCGCAAG
TTCGTCGGTCACACAGCCAAGCTGAATGACCTCACTTTCAGTCCGGATAG
CCGCTGGCTGATCACCGCCGCCATGGACTCCACGATCAAGGTGTGGGACA
TACCTTCCTCCTACATGGTGGATCACTTCCGCGTCGAGGCGCCTTGCGTA
TCGTTAAGTATGTCGCCTAATGGCGACTTTCTGGCCACCGCACATGTTGG
ACTTTTGGGCATTTACCTGTGGGCCAACAAGACGCTGTTTAATCAGATTT
CCCTGCGCTCCATCGATCCTTTGGAGCCGGCTCCGTACGTGGGATTGCCC
ACGAATGTGTGCGATGCCATGGAACTGGAAGATGGCATGAAGGAGCTAGA
GATCGACGAAGAGGACGAGTCAAAACTCGGCGAGCTAGTTGACACCAAGT
ACGAAACTCCAACGCAGCTGTCCGAGGAACTGATAACGCTATCCGGGTTG
GCTGCATCCCGTTGGCAGAATCTATTGGATTTGGAGCTAATCAAGCAACG
TAACAAGCCCAAGGCACCACCAAAAGCTCCCAAACAGGCCCCATTCTTCC
TGCCCACGGTTTCGGGACTGGAACTGCGCTTCGATGTGGAGAACGGTCAG
AAGGAGGAGGATGAATCCCGGATTCGGAAGGCTTCTACTCTCAACAATCT
TACTGCCTTTGGCCAGCTGCTGGAGGAAACTGCTGACTCCCTGGACTTCG
CATCGGCTGTGGCGCACTTGACCCAACTAGGACCATCGATGGTTGACTTT
GAGATCAAATCTCTGCACCCGGAGGCTGGAGGAACACTCCTTGCCATGCT
GCAGTTCCTCAAACTCGTTAAGTTCATGTTTGGAACCAATCTGAACTTTG
AGCTGGCTCAATCGTATCTAAGCGTCTTCTTGCGATCCCACGGTCTCGGG
TTGACGGAGTTCCCGGATTTGGTAAAGGAGCTGCGCACTGTGTCCCAGGT
GCAGCAGGAGGCTTGGCAGCGTGTGGAGGAGAAGCTCATCTATGGAACTG
GAGTTGTGGCCGCTCTCCGAAACTTTGCGCACGCAAGCTTTCTAGACCAT

BO08655.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:26:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG9799-RA 2769 CG9799-PA 1..2766 17..2782 13830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:26:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG9799-RA 2939 CG9799-RA 109..2874 17..2782 13830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:26:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13385713..13386888 2782..1607 5880 100 Minus
3R 32079331 3R 13387443..13388601 1175..17 5795 100 Minus
3R 32079331 3R 13386948..13387379 1607..1176 2160 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:26:15 has no hits.

BO08655.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:19 Download gff for BO08655.complete
Subject Subject Range Query Range Percent Splice Strand
CG9799-RA 100..2879 9..2792 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:06 Download gff for BO08655.complete
Subject Subject Range Query Range Percent Splice Strand
CG9799-RA 109..2874 17..2784 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:38 Download gff for BO08655.complete
Subject Subject Range Query Range Percent Splice Strand
CG9799-RA 107..2872 17..2784 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:39 Download gff for BO08655.complete
Subject Subject Range Query Range Percent Splice Strand
CG9799-RA 109..2874 17..2784 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:39 Download gff for BO08655.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13385711..13386887 1608..2784 99 <- Minus
3R 13386948..13387379 1176..1607 100 <- Minus
3R 13387443..13388601 17..1175 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:06 Download gff for BO08655.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9211433..9212609 1608..2784 99 <- Minus
arm_3R 9212670..9213101 1176..1607 100 <- Minus
arm_3R 9213165..9214323 17..1175 100   Minus

BO08655.pep Sequence

Translation from 16 to 2800

> BO08655.pep
MTHLRSEDKPQSEERKSVFKESSCIFRRNRALGYVSNQVPAVTRYVQRRR
DTLLITCIGRSFQVYTANHFRLLHVSGLHPDEITALATDRLHTYTASNKC
IYAWRAGKHIRHVYRGHQKDVHLLLPFGSSLIAIDRQNVLKVWNISTEDV
YLEVPFRSEEFQITAVTHPPTYINKIVLGSQQGQLKILNIKKNSVVCTLS
HHDSRITCIEPSPALDVVAVGHGDGTIILLNLKFDEVLMSFQQDWGQVTN
LSFRTDGPPILVSACSNGYMAFWNLEERKLAGQLQAHEESVTTAICLPSE
PVVFTTSPDNSMRMFVFDMPDGGARQLRIREGHTKPPFCIRYHGSSGVSI
LSSGEDSTMRVFSTISESLNKSMGRATYNPKATKKKNRFEHDKFGMPPIL
EFTSDTAREKEWDNIAAIHAGVIQTTTWSFGKNRMGEHRLVPKQFQNSNR
TNFQNETTCIVLTHCGNFVIIGYSSGDIERFNIQSGLHRATYGSPAHKMA
VRGLASDNLNQTVISGCSEGLLKFWSFKGKVDKPLATLRLADGIALIRQH
RESSMLAIGLETFKIFVVDMHTRVIVRKFVGHTAKLNDLTFSPDSRWLIT
AAMDSTIKVWDIPSSYMVDHFRVEAPCVSLSMSPNGDFLATAHVGLLGIY
LWANKTLFNQISLRSIDPLEPAPYVGLPTNVCDAMELEDGMKELEIDEED
ESKLGELVDTKYETPTQLSEELITLSGLAASRWQNLLDLELIKQRNKPKA
PPKAPKQAPFFLPTVSGLELRFDVENGQKEEDESRIRKASTLNNLTAFGQ
LLEETADSLDFASAVAHLTQLGPSMVDFEIKSLHPEAGGTLLAMLQFLKL
VKFMFGTNLNFELAQSYLSVFLRSHGLGLTEFPDLVKELRTVSQVQQEAW
QRVEEKLIYGTGVVAALRNFAHASFLDH

BO08655.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:17:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG9799-PA 922 CG9799-PA 1..922 1..922 4791 100 Plus