Clone Sequence Records
BO08702.5prime Sequence
893 bp (811 high quality bases) assembled on 2006-01-09
> BO08702.5prime
GAAGTTATCAGTCGACATGCTGGAACTTAAGCGTAGCCTGGACGCCAAGG
GCCACTGCCTGTTGGAGATGCCCTCGGGAACGGGCAAGACGGCCACGCTG
CTCTCCCTGATCGTTGCCTACATGGTGGAGCATCCGGAAACGGTGCGCAA
GCTCATCTACTGCTCGCGTACTGTTCCGGAGATCGAGAAAGTGATCGCCG
AGCTGCAGAACCTGATGGTTTACTACGAGCGCCACTGCCCCAATCCACCA
CCCTTCACCGGTCTGGTGCTCAGCTCTAGGAAGAACATGTGCATCCATCC
GGAGGTCAGTAAGGAGCGCGAGGGCAAGGCCGTGGACGGTAAATGTTACG
GACTCACTGCCAGCTACATTCGCGAACGGCACGAGATGGACACCGAGACG
CCCATTTGCCAGTACTTTGAGGGATTTAGCCTGGAAGGCAAGGAGTCCAC
ATTGCCGGTCGGCGTCTACAGCATCGATGATCTTAAGGAATACGGTCGGT
CGCGCAACTGGTGTCCCTACTTTTTGGCTCGCTATGCTATTGCCCATGCT
CACATTGTGGTATACAGTTACCACTATCTATTAGATCCGAAAATTGCCCA
GGTGGTATCTAAGGAAATGAGCCGCGAGTCCTGTGTGGTCTTTGATGAGG
CGCACAACATCGACAACGTTTGCATCGATTCGATGAGTGTGAAGATCAAC
AGACGCACCGTGGAGCGAAGCACGAATGCTTTGAACCATCTAACTAAACT
GGTTCAGGACATTCGCGAAGAGGACACAAATCGTCTGAACGAGGAGTATC
AGCGCATGGTGCAGGGTCTGAAGGATGCCAGTGTGCAGCGCGACACGGAC
ATGATCCTGGCCAATCCGGTCCTGCCAAACGATGTCCTAACCG
BO08702.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:28:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9433-PA | 2310 | Xpd-RA | 71..949 | 15..893 | 4395 | 100 | Plus |
| CG9433-PB | 2238 | Xpd-RB | 1..877 | 17..893 | 4385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Xpd-RA | 2797 | CG9433-RA | 132..1010 | 15..893 | 4395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21171186..21171579 | 15..408 | 1970 | 100 | Plus |
| 2R | 25286936 | 2R | 21171824..21172044 | 539..759 | 1105 | 100 | Plus |
| 2R | 25286936 | 2R | 21172104..21172237 | 760..893 | 670 | 100 | Plus |
| 2R | 25286936 | 2R | 21171631..21171761 | 408..538 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:53:17 has no hits.
BO08702.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:52:42 Download gff for
BO08702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9433-PA | 64..949 | 6..893 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:49:32 Download gff for
BO08702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9433-PA | 64..949 | 6..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:52:42 Download gff for
BO08702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xpd-RA | 125..1010 | 6..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:25 Download gff for
BO08702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xpd-RA | 125..1010 | 6..893 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:56:25 Download gff for
BO08702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21171179..21171578 | 6..407 | 99 | -> | Plus |
| 2R | 21171631..21171761 | 408..538 | 100 | -> | Plus |
| 2R | 21171824..21172044 | 539..759 | 100 | -> | Plus |
| 2R | 21172104..21172237 | 760..893 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:52:42 Download gff for
BO08702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17059609..17059742 | 760..893 | 100 | | Plus |
| arm_2R | 17059329..17059549 | 539..759 | 100 | -> | Plus |
| arm_2R | 17058684..17059083 | 6..407 | 99 | -> | Plus |
| arm_2R | 17059136..17059266 | 408..538 | 100 | -> | Plus |
BO08702.complete Sequence
2269 bp assembled on 2007-03-23
GenBank Submission: FJ631267
> BO08702.complete
GAAGTTATCAGTCGACATGCTGGAACTTAAGCGTAGCCTGGACGCCAAGG
GCCACTGCCTGTTGGAGATGCCCTCGGGAACGGGCAAGACGGCCACGCTG
CTCTCCCTGATCGTTGCCTACATGGTGGAGCATCCGGAAACGGTGCGCAA
GCTCATCTACTGCTCGCGTACTGTTCCGGAGATCGAGAAAGTGATCGCCG
AGCTGCAGAACCTGATGGTTTACTACGAGCGCCACTGCCCCAATCCACCA
CCCTTCACCGGTCTGGTGCTCAGCTCTAGGAAGAACATGTGCATCCATCC
GGAGGTCAGTAAGGAGCGCGAGGGCAAGGCCGTGGACGGTAAATGTTACG
GACTCACTGCCAGCTACATTCGCGAACGGCACGAGATGGACACCGAGACG
CCCATTTGCCAGTACTTTGAGGGATTTAGCCTGGAAGGCAAGGAGTCCAC
ATTGCCGGTCGGCGTCTACAGCATCGATGATCTTAAGGAATACGGTCGGT
CGCGCAACTGGTGTCCCTACTTTTTGGCTCGCTATGCTATTGCCCATGCT
CACATTGTGGTATACAGTTACCACTATCTATTAGATCCGAAAATTGCCCA
GGTGGTATCTAAGGAAATGAGCCGCGAGTCCTGTGTGGTCTTTGATGAGG
CGCACAACATCGACAACGTTTGCATCGATTCGATGAGTGTGAAGATCAAC
AGACGCACCGTGGAGCGAAGCACGAATGCTTTGAACCATCTAACTAAACT
GGTTCAGGACATTCGCGAAGAGGACACAAATCGTCTGAACGAGGAGTATC
AGCGCATGGTGCAGGGTCTGAAGGATGCCAGTGTGCAGCGCGACACGGAC
ATGATCCTGGCCAATCCGGTCCTGCCAAACGATGTCCTAACCGAGGTGGT
GCCCGGAAATATTAGGAACGCCGATCATTTCCTTAGCTTTCTGCGTCGAT
TCATCGAGTATATAAAGACAAGACTGCGCGTTCATCATGTCGTTCAGGAG
TCACCTGCGGGCTTCCTTAAGGATATTTCCTCCAAGATTTGTATAGAGAG
AAAGCCTCTGCGTTTTTGTGCTGAGCGCCTGTCCAGTCTGCTGCGCACGC
TTGAGATCAGTGATTTGACGGAGTATGGAGCCCTTACACTGATTACACAC
TTTGCCACCCTGGTGTCCACCTACACAAAGGGCTTCACAATCATTATAGA
ACCCTTCGACGATAAAACGCCGACTGTTTCGAATCCCATTTTGCACTTTA
GTTGCCTAGACTCTTCCATTGCCATGGCTCCGGTATTTTCGAGATTTCAA
ACCGTGGTCATCACTTCTGGCACATTGTCACCCATGGACATGTACCCGAA
GATACTCGATTTCGATCCAGTGGTGATGAGCAGCTTTACCATGACACTAG
CCCGTCCGTGTCTTCTTCCTATGATTGTATCGAAGGGCAACGACCAGGTG
ACCATTTCGTCCAAGTTCGAGACGCGAGAAGACACCGCCGTCATTCGAAA
CTATGGCCAGCTTTTGGTGGAGGTGGCAAAGACAGTGCCCGACGGTATTG
TATGCTTCTTCACCTCCTATTTGTACTTGGAGTCTGTGGTGGCCTCTTGG
TATGATCAGGGAATCGTCGATACCCTGCTTCGCTACAAGCTTCTATTCAT
TGAGACTCAGGACAATGCCGAGACCAGCTACGCCCTGATGAACTATGTTA
AGGCCTGCGATTGTGGTCGTGGAGCAGTGCTGTTGGCTGTGGCGCGTGGC
AAGGTCTCCGAGGGTGTGGATTTCGACCATCATTATGGTCGCGCGGTGCT
CATGTTCGGCATCCCCTACGTGTACACGCAGTCGCGTATTCTGAAGGCCC
GGTTGGACTACCTGCGGGATCAGTTTCAGATACGTGAGAATGACTTCCTG
ACCTTCGACGCCATGCGTCATGCTGCCCAGTGCGTGGGTCGTGCACTGCG
CGGCAAGACGGACTACGGCATCATGATCTTCGCGGACAAGCGCTTTTCGC
GCCACGACAAGAGGTCGCGTTTGCCCAAGTGGATCCAAGAGCATCTGGTG
GACAGCTTCTGCAACCTGAGCACGGAGGAGGCCGTCCAGCTGGCCCGTCG
TTGGCTGCGGCGCATGGCGCAACCGTTCACACGTGAGGACCAGCTGGGCA
TCTCGCTGCTGACCCTCGCCCAGCTGGAGAACATGGAGCAGGAGAAGCTG
GAGCGGCAGGCTCAGGGCAAGCAGGGCGTTGGCGGCGAGGTGCAGGAGCT
GGCAAGCTTTCTAGACCAT
BO08702.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:42:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Xpd-RA | 2310 | CG9433-PA | 71..2307 | 15..2251 | 11185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:42:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Xpd-RA | 2797 | CG9433-RA | 132..2368 | 15..2251 | 11185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:42:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21173525..21174075 | 1701..2251 | 2755 | 100 | Plus |
| 2R | 25286936 | 2R | 21171186..21171579 | 15..408 | 1970 | 100 | Plus |
| 2R | 25286936 | 2R | 21172104..21172485 | 760..1141 | 1910 | 100 | Plus |
| 2R | 25286936 | 2R | 21172543..21172825 | 1141..1423 | 1415 | 100 | Plus |
| 2R | 25286936 | 2R | 21172888..21173168 | 1423..1703 | 1405 | 100 | Plus |
| 2R | 25286936 | 2R | 21171824..21172044 | 539..759 | 1105 | 100 | Plus |
| 2R | 25286936 | 2R | 21171631..21171761 | 408..538 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:42:50 has no hits.
BO08702.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:14 Download gff for
BO08702.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xpd-RA | 64..2310 | 6..2254 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:29:21 Download gff for
BO08702.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xpd-RB | 143..2386 | 6..2251 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:14 Download gff for
BO08702.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xpd-RA | 134..2368 | 17..2253 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:15 Download gff for
BO08702.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xpd-RB | 143..2386 | 6..2251 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:04 Download gff for
BO08702.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xpd-RA | 134..2368 | 17..2253 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:04 Download gff for
BO08702.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21171188..21171578 | 17..407 | 100 | -> | Plus |
| 2R | 21171631..21171761 | 408..538 | 100 | -> | Plus |
| 2R | 21171824..21172044 | 539..759 | 100 | -> | Plus |
| 2R | 21172104..21172485 | 760..1141 | 100 | -> | Plus |
| 2R | 21172544..21172825 | 1142..1423 | 100 | -> | Plus |
| 2R | 21172889..21173167 | 1424..1702 | 100 | -> | Plus |
| 2R | 21173527..21174075 | 1703..2253 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:14 Download gff for
BO08702.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17060049..17060330 | 1142..1423 | 100 | -> | Plus |
| arm_2R | 17058693..17059083 | 17..407 | 100 | -> | Plus |
| arm_2R | 17059136..17059266 | 408..538 | 100 | -> | Plus |
| arm_2R | 17059329..17059549 | 539..759 | 100 | -> | Plus |
| arm_2R | 17059609..17059990 | 760..1141 | 100 | -> | Plus |
| arm_2R | 17060394..17060672 | 1424..1702 | 100 | -> | Plus |
| arm_2R | 17061032..17061580 | 1703..2253 | 99 | | Plus |
BO08702.pep Sequence
Translation from 16 to 2269
> BO08702.pep
MLELKRSLDAKGHCLLEMPSGTGKTATLLSLIVAYMVEHPETVRKLIYCS
RTVPEIEKVIAELQNLMVYYERHCPNPPPFTGLVLSSRKNMCIHPEVSKE
REGKAVDGKCYGLTASYIRERHEMDTETPICQYFEGFSLEGKESTLPVGV
YSIDDLKEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKE
MSRESCVVFDEAHNIDNVCIDSMSVKINRRTVERSTNALNHLTKLVQDIR
EEDTNRLNEEYQRMVQGLKDASVQRDTDMILANPVLPNDVLTEVVPGNIR
NADHFLSFLRRFIEYIKTRLRVHHVVQESPAGFLKDISSKICIERKPLRF
CAERLSSLLRTLEISDLTEYGALTLITHFATLVSTYTKGFTIIIEPFDDK
TPTVSNPILHFSCLDSSIAMAPVFSRFQTVVITSGTLSPMDMYPKILDFD
PVVMSSFTMTLARPCLLPMIVSKGNDQVTISSKFETREDTAVIRNYGQLL
VEVAKTVPDGIVCFFTSYLYLESVVASWYDQGIVDTLLRYKLLFIETQDN
AETSYALMNYVKACDCGRGAVLLAVARGKVSEGVDFDHHYGRAVLMFGIP
YVYTQSRILKARLDYLRDQFQIRENDFLTFDAMRHAAQCVGRALRGKTDY
GIMIFADKRFSRHDKRSRLPKWIQEHLVDSFCNLSTEEAVQLARRWLRRM
AQPFTREDQLGISLLTLAQLENMEQEKLERQAQGKQGVGGEVQELASFLD
H
BO08702.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:19:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Xpd-PA | 769 | CG9433-PA | 25..769 | 1..745 | 3859 | 100 | Plus |
| CG4078-PB | 985 | CG4078-PB | 30..730 | 13..679 | 501 | 24.5 | Plus |
| CG4078-PA | 985 | CG4078-PA | 30..730 | 13..679 | 501 | 24.5 | Plus |
| CG11403-PA | 861 | CG11403-PA | 540..840 | 375..680 | 355 | 30.8 | Plus |
