Clone Sequence Records
BO08708.3prime Sequence
817 bp (786 high quality bases) assembled on 2006-01-09
> BO08708.3prime
ATGGTCTAGAAAGCTTGCGTCTGCATATACCACAAACGGTACATGGTTTT
CTGTAACACTATCCTGTAACTCAACCTTAACATAGTTTGCAGAGGTATCT
TCACTCTGGCTGTTTGATTCAGCGTTTGAACAACCACTTTTCCCCGAAAT
ACTGGTATTTCTCTTTGCTTTTGCGTGAGTTAATATGTGCGATTTTAAAT
TCGTGGATTGAGCAAATTTTTTATTACAGGCATCAAACGGACAAACAAAT
GGTCTATCTCCAGTATGTATTCTTACGTGTGTTCTTAAGTTAAAATCCAG
AGAAAATCGTTTTCCGCATCCCTCGAATGTACATTGAAATGGTTTTTCAC
CGGTGTGAACCAACTGATGTCTTTTAAGCTTTGAGCTTTCTACGAAAGCT
TTTCCACATTCTGCACAAACATGGACTCGAGGACCGTGAGTGTGCAAATG
TTTTCGCATTGCAGATGAATCTCTGAAGTGCTTATTACAACCCTTATGTG
GGCAAGCTATTTTTTTATCATTTGTATAAGATACTGTAACTTCGGAAAGA
TTCATTTCCCCACATCCAGTCGAGTCTGTATTGTCTTGGTGAGTTGATTG
TGATATTGTTGATAAGCAATCATTTACTTGCCCCTCATGCAAGCCAATAC
GAAATGGCACTGAGCTGGGCAAAGCATGCAGATCACCGGTGTTGCCCGTA
TGATTACTTAAAGTTCTGTGATTATTAATTGTCATTGCGGCAGTTTCGTT
AACTAACTCAATACTTGAAGAATCCGGAAGCAAGATTGGCTCTTCAAAGC
TTAAGGTGGTCTTAGAT
BO08708.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:28:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17743-PA | 1563 | pho-RA | 762..1560 | 817..19 | 3995 | 100 | Minus |
| CG17743-PB | 1563 | pho-RB | 762..1560 | 817..19 | 3995 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:02:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pho-RB | 2159 | CG17743-RB | 944..1742 | 817..19 | 3995 | 100 | Minus |
| pho-RA | 2381 | CG17743-RA | 1166..1964 | 817..19 | 3995 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:02:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 1173806..1174099 | 284..577 | 1470 | 100 | Plus |
| 4 | 1348131 | 4 | 1174159..1174400 | 576..817 | 1210 | 100 | Plus |
| 4 | 1348131 | 4 | 1172886..1173030 | 19..163 | 725 | 100 | Plus |
| 4 | 1348131 | 4 | 1173083..1173205 | 163..285 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 11:02:06 has no hits.
BO08708.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:52:47 Download gff for
BO08708.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pho-PA | 762..1563 | 16..817 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:49:40 Download gff for
BO08708.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17743-PB | 762..1563 | 16..817 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:32:13 Download gff for
BO08708.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pho-RA | 1166..1968 | 15..817 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:41:58 Download gff for
BO08708.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pho-RA | 1166..1968 | 15..817 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:41:58 Download gff for
BO08708.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 1172882..1173030 | 15..163 | 98 | <- | Plus |
| 4 | 1173084..1173203 | 164..283 | 100 | <- | Plus |
| 4 | 1173806..1174097 | 284..575 | 100 | <- | Plus |
| 4 | 1174159..1174400 | 576..817 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:32:13 Download gff for
BO08708.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 1193508..1193656 | 15..163 | 98 | <- | Plus |
| arm_4 | 1193710..1193829 | 164..283 | 100 | <- | Plus |
| arm_4 | 1194432..1194723 | 284..575 | 100 | <- | Plus |
| arm_4 | 1194785..1195026 | 576..817 | 100 | | Plus |
BO08708.5prime Sequence
861 bp (749 high quality bases) assembled on 2006-01-09
> BO08708.5prime
GAAGTTATCAGTCGACATGGCATACGAACGTTTTGGAATTATTCTTCAAA
GTGAACAGTACGATGAAGATATAGGCAACACAAAAGTCAATCAGAAAATG
AATGAAGGCAACCACTACGACTTACACAGAAAAAATGCGTTTGACCGAAT
TATTCATTCAGAATCAAAAAAAGGTGATAACGTAATTAATTACAACATTC
ATGAAAACGACAAAATAAAAGCGGCTGACAATATATTTTCTTCTAAATTA
AAAATGAACCCGAATATGAGCTATGAAATGAATATCAACTGTTTTAAAAA
TATTGGATATGGCGAAAATCAAGAAACTTCAAAAGTTTTAACAAATAGTT
TATCGAACAATGATATTAATACCGAAGAGTCTGGTGTTGTCGATAAAAAT
TCACCTTTCCTAACCTTAGGTACAACTATACTTAATTCAAACGGCAAGTC
AAGACGGTGGGAACAAAAGCTTGTTCATATTAAAACTATGGAGGGAGAGT
TTAGTGTTACAATGTGGGCATCCGGGATATCAGACGATGAATACTCTGGT
TCAGATCAAATCGTTGGGGCTTCGGATTTATTAAAAGGAAAGGAAGAATT
TGGCATTGATGGCTTCACGTCTCAACAAAATAAAGAATACCAGAAAATGG
AGTCAAAATTTACAAATGCACAGACCCTTGAAATGCCGCATCCTATAAGC
TCAGTTCAGATCATGGATCATTTAATAAAGGAAAGGGGAAATTTATCGCA
AGAAAATAATATTTCCGAAAGAATTTTATCTAAGACCACCTTAAGCTTTG
AAGAGCCAATCTTGCTTCCGGATTCTTCAAGTATTGAGTTAGTTAACGAA
ACTGCCGCAAT
BO08708.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:28:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17743-PA | 1563 | pho-RA | 1..845 | 17..861 | 4225 | 100 | Plus |
| CG17743-PB | 1563 | pho-RB | 1..845 | 17..861 | 4225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:29:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pho-RB | 2159 | CG17743-RB | 183..1027 | 17..861 | 4225 | 100 | Plus |
| pho-RA | 2381 | CG17743-RA | 405..1249 | 17..861 | 4225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:29:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 1174317..1174928 | 861..250 | 3060 | 100 | Minus |
| 4 | 1348131 | 4 | 1174982..1175125 | 249..106 | 720 | 100 | Minus |
| 4 | 1348131 | 4 | 1181047..1181138 | 108..17 | 460 | 100 | Minus |
Blast to na_te.dros performed 2015-02-04 01:29:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 2296..2468 | 167..343 | 110 | 53.1 | Plus |
BO08708.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:52:48 Download gff for
BO08708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pho-PA | 1..845 | 17..861 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:49:41 Download gff for
BO08708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17743-PB | 1..845 | 17..861 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:41:33 Download gff for
BO08708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pho-RA | 399..1249 | 11..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:29:55 Download gff for
BO08708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pho-RA | 399..1249 | 11..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:29:55 Download gff for
BO08708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 1174317..1174928 | 250..861 | 100 | <- | Minus |
| 4 | 1174982..1175123 | 108..249 | 100 | <- | Minus |
| 4 | 1181048..1181144 | 11..107 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:41:33 Download gff for
BO08708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 1194943..1195554 | 250..861 | 100 | <- | Minus |
| arm_4 | 1195608..1195749 | 108..249 | 100 | <- | Minus |
| arm_4 | 1201674..1201770 | 11..107 | 96 | | Minus |
BO08708.complete Sequence
1594 bp assembled on 2006-10-09
GenBank Submission: FJ631268
> BO08708.complete
GAAGTTATCAGTCGACATGGCATACGAACGTTTTGGAATTATTCTTCAAA
GTGAACAGTACGATGAAGATATAGGCAACACAAAAGTCAATCAGAAAATG
AATGAAGGCAACCACTACGACTTACACAGAAAAAATGCGTTTGACCGAAT
TATTCATTCAGAATCAAAAAAAGGTGATAACGTAATTAATTACAACATTC
ATGAAAACGACAAAATAAAAGCGGCTGACAATATATTTTCTTCTAAATTA
AAAATGAACCCGAATATGAGCTATGAAATGAATATCAACTGTTTTAAAAA
TATTGGATATGGCGAAAATCAAGAAACTTCAAAAGTTTTAACAAATAGTT
TATCGAACAATGATATTAATACCGAAGAGTCTGGTGTTGTCGATAAAAAT
TCACCTTTCCTAACCTTAGGTACAACTATACTTAATTCAAACGGCAAGTC
AAGACGGTGGGAACAAAAGCTTGTTCATATTAAAACTATGGAGGGAGAGT
TTAGTGTTACAATGTGGGCATCCGGGATATCAGACGATGAATACTCTGGT
TCAGATCAAATCGTTGGGGCTTCGGATTTATTAAAAGGAAAGGAAGAATT
TGGCATTGATGGCTTCACGTCTCAACAAAATAAAGAATACCAGAAAATGG
AGTCAAAATTTACAAATGCACAGACCCTTGAAATGCCGCATCCTATAAGC
TCAGTTCAGATCATGGATCATTTAATAAAGGAAAGGGGAAATTTATCGCA
AGAAAATAATATTTCCGAAAGAATTTTATCTAAGACCACCTTAAGCTTTG
AAGAGCCAATCTTGCTTCCGGATTCTTCAAGTATTGAGTTAGTTAACGAA
ACTGCCGCAATGACAATTAATAATCACAGAACTTTAAGTAATCATACGGG
CAACACCGGTGATCTGCATGCTTTGCCCAGCTCAGTGCCATTTCGTATTG
GCTTGCATGAGGGGCAAGTAAATGATTGCTTATCAACAATATCACAATCA
ACTCACCAAGACAATACAGACTCGACTGGATGTGGGGAAATGAATCTTTC
CGAAGTTACAGTATCTTATACAAATGATAAAAAAATAGCTTGCCCACATA
AGGGTTGTAATAAGCACTTCAGAGATTCATCTGCAATGCGAAAACATTTG
CACACTCACGGTCCTCGAGTCCATGTTTGTGCAGAATGTGGAAAAGCTTT
CGTAGAAAGCTCAAAGCTTAAAAGACATCAGTTGGTTCACACCGGTGAAA
AACCATTTCAATGTACATTCGAGGGATGCGGAAAACGATTTTCTCTGGAT
TTTAACTTAAGAACACACGTAAGAATACATACTGGAGATAGACCATTTGT
TTGTCCGTTTGATGCCTGTAATAAAAAATTTGCTCAATCCACGAATTTAA
AATCGCACATATTAACTCACGCAAAAGCAAAGAGAAATACCAGTATTTCG
GGGAAAAGTGGTTGTTCAAACGCTGAATCAAACAGCCAGAGTGAAGATAC
CTCTGCAAACTATGTTAAGGTTGAGTTACAGGATAGTGTTACAGAAAACC
ATGTACCGTTTGTGGTATATGCAGACGCAAGCTTTCTAGACCAT
BO08708.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:18:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pho-RB | 1563 | CG17743-PB | 1..1560 | 17..1576 | 7800 | 100 | Plus |
| pho-RA | 1563 | CG17743-PA | 1..1560 | 17..1576 | 7800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pho-RB | 2159 | CG17743-RB | 183..1742 | 17..1576 | 7800 | 100 | Plus |
| pho-RA | 2381 | CG17743-RA | 405..1964 | 17..1576 | 7800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 1174159..1174928 | 1019..250 | 3850 | 100 | Minus |
| 4 | 1348131 | 4 | 1173806..1174099 | 1311..1018 | 1470 | 100 | Minus |
| 4 | 1348131 | 4 | 1172886..1173030 | 1576..1432 | 725 | 100 | Minus |
| 4 | 1348131 | 4 | 1174982..1175125 | 249..106 | 720 | 100 | Minus |
| 4 | 1348131 | 4 | 1173083..1173205 | 1432..1310 | 615 | 100 | Minus |
| 4 | 1348131 | 4 | 1181047..1181138 | 108..17 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:18:21 has no hits.
BO08708.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:12 Download gff for
BO08708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pho-RB | 1..1563 | 17..1579 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:06:30 Download gff for
BO08708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pho-RB | 165..1734 | 11..1580 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:42 Download gff for
BO08708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pho-RA | 405..1964 | 17..1578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:12 Download gff for
BO08708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pho-RB | 165..1734 | 11..1580 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:27 Download gff for
BO08708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pho-RA | 405..1964 | 17..1578 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:27 Download gff for
BO08708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 1172883..1173030 | 1432..1578 | 98 | <- | Minus |
| 4 | 1173084..1173203 | 1312..1431 | 100 | <- | Minus |
| 4 | 1173806..1174097 | 1020..1311 | 100 | <- | Minus |
| 4 | 1174159..1174928 | 250..1019 | 100 | <- | Minus |
| 4 | 1174982..1175123 | 108..249 | 100 | <- | Minus |
| 4 | 1181048..1181138 | 17..107 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:42 Download gff for
BO08708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 1193509..1193656 | 1432..1578 | 98 | <- | Minus |
| arm_4 | 1193710..1193829 | 1312..1431 | 100 | <- | Minus |
| arm_4 | 1194432..1194723 | 1020..1311 | 100 | <- | Minus |
| arm_4 | 1194785..1195554 | 250..1019 | 100 | <- | Minus |
| arm_4 | 1195608..1195749 | 108..249 | 100 | <- | Minus |
| arm_4 | 1201674..1201764 | 17..107 | 100 | | Minus |
BO08708.pep Sequence
Translation from 16 to 1594
> BO08708.pep
MAYERFGIILQSEQYDEDIGNTKVNQKMNEGNHYDLHRKNAFDRIIHSES
KKGDNVINYNIHENDKIKAADNIFSSKLKMNPNMSYEMNINCFKNIGYGE
NQETSKVLTNSLSNNDINTEESGVVDKNSPFLTLGTTILNSNGKSRRWEQ
KLVHIKTMEGEFSVTMWASGISDDEYSGSDQIVGASDLLKGKEEFGIDGF
TSQQNKEYQKMESKFTNAQTLEMPHPISSVQIMDHLIKERGNLSQENNIS
ERILSKTTLSFEEPILLPDSSSIELVNETAAMTINNHRTLSNHTGNTGDL
HALPSSVPFRIGLHEGQVNDCLSTISQSTHQDNTDSTGCGEMNLSEVTVS
YTNDKKIACPHKGCNKHFRDSSAMRKHLHTHGPRVHVCAECGKAFVESSK
LKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPFVCPFDA
CNKKFAQSTNLKSHILTHAKAKRNTSISGKSGCSNAESNSQSEDTSANYV
KVELQDSVTENHVPFVVYADASFLDH
BO08708.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pho-PB | 520 | CG17743-PB | 1..520 | 1..520 | 2746 | 100 | Plus |
| pho-PA | 520 | CG17743-PA | 1..520 | 1..520 | 2746 | 100 | Plus |
| phol-PB | 669 | CG3445-PB | 499..618 | 354..473 | 551 | 80 | Plus |
| phol-PA | 669 | CG3445-PA | 499..618 | 354..473 | 551 | 80 | Plus |
| MTF-1-PA | 791 | CG3743-PA | 168..326 | 351..501 | 267 | 34 | Plus |
