Clone Sequence Records
BO08709.3prime Sequence
822 bp (797 high quality bases) assembled on 2006-01-09
> BO08709.3prime
ATGGTCTAGAAAGCTTGCACTGGACTGAAGTGTTAAATAAAATTTATAAT
GTGAAGTAATGAGTATGCTTACCTCCTCCTTTGTGGCCATCCTATTGTTA
TTGCCTTCCATTGCCTCTGATCCTGCAGCTTCCTTCGACTCCTTAGCTTC
CTTTGCTTCCTGTTCCGCCCTCGCCAGTTCCGCCTTCGCCTGCTCCGCCT
CCAGATCCTCGGGCAACTTGATGACCACCTGGGACCTAATGTCGTAATCG
AACTTGGTGATATTATTCACCAGTGGTTTGGCCCAACCAATGTGTAGAAT
GGGAGTCAAGCTATCCTCCTCCCATTGGCAGATGCCGTCGTAGAATCGCA
GCAAATTGGCGAAAACCTCAGAATCTCGTAGAATACTTCTCGCCGAATGA
CCAGAACTTTCTGTTTTCATCACGTACGGTATGAGCTCGTTGGCAATGTC
CAATAGCTCCTTGTAGATCTCCTCGTCATCACGACACTGATACGTATACA
AACGAATAACGTCCGCCGCATTTGCCCATGCGGCAAAGGCGTCGCGGTAT
TTGAGCAATCGATTGTAGTAGTTCCCCTGGTAGGTATACGGATATACGTG
ATGGTTCCGATAGTGGGTCCTCGCCGACTCTATAGCCTCGCGATATAACT
GCTCGCAACTGATGCTGGGATGCGTGCGATGAATCTCCTCCAGCTCGCCT
AGGGTGCCCAGGGCCATCGGATAGCGTTTGAGGTGGCCCAAATCGTAGAG
TAGCCACAGCAACTGCTGTTGAAGCTCTGCCACCTCCACGCAGTCACTGT
TCGAGGTCAATGAAATATTCAA
BO08709.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:28:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13778-PB | 1593 | Mnn1-RB | 788..1590 | 821..19 | 4015 | 100 | Minus |
CG13778-PC | 2292 | Mnn1-RC | 788..1536 | 821..73 | 3745 | 100 | Minus |
CG13778-PA | 2292 | Mnn1-RA | 788..1536 | 821..73 | 3745 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:22:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mnn1-RB | 1927 | CG13778-RB | 1083..1885 | 821..19 | 4015 | 100 | Minus |
Mnn1-RA | 4275 | CG13778-RA | 1827..2575 | 821..73 | 3745 | 100 | Minus |
Mnn1-RC | 5196 | CG13778-RC | 1827..2575 | 821..73 | 3745 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:22:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7058450..7059252 | 821..19 | 4015 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:22:39 has no hits.
BO08709.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:52:49 Download gff for
BO08709.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mnn1-PB | 789..1593 | 16..820 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:49:43 Download gff for
BO08709.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13778-PB | 789..1593 | 16..820 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:12:35 Download gff for
BO08709.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mnn1-RB | 1084..1889 | 15..820 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:10:44 Download gff for
BO08709.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mnn1-RB | 1084..1889 | 15..820 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:10:44 Download gff for
BO08709.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7058451..7059256 | 15..820 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:12:35 Download gff for
BO08709.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7058451..7059256 | 15..820 | 99 | | Minus |
BO08709.5prime Sequence
749 bp (747 high quality bases) assembled on 2006-01-09
> BO08709.5prime
GAAGTTATCAGTCGACATGTCCACGATTACCAGAAGCGCTAGCGCAAGTC
CTATGGCGCTGAACGGCGTCATCGATGCCAGCCTGTTCCCCCTAAAGTCC
ACGGCCGATGTTATCAATCTGTTCCGTCGCGCTCTAACCTCTGGAATCGA
GCCTGATCTCACCCTGCTCTCCATTGTCGTTGGATACATCGAGCTGTCTT
TGACGACGGGAGAGGCTGCTGCGCAGGCCGCTCAAGCCGCCGCGGCCGCA
GTCGCAGCAGGTGACATTAGTCAGGCGACGACAGGTGGAAATGACATCAT
CATGGGCAACAGCGTCCCGTTTCCAGTTGTTACCCACGAACTGATCGCCG
GGCTGTATAAGAAGTTCCAGACGATCCTGTCGGTGGTCGAGAAGCCCAAG
CCCCACCGCCAAGCCACCCGCGAGGTGATCAAGAAGGTGTCGGATGTGAT
CTGGAACTCGCTGATCCGCAGCAGCTACAAGGATCGGGCTCACTTGCAAA
ACCTCTACAGCTATCTGTCCGGCAACAAGTTGGACTGCTTCGGCGTTGCT
CTGGCTGTGGTGGCGGGTTGCCAGTTGCTTGGCTACAAGGACGTGCGACT
GGCCATCTCCGAGGATCATGCCTGGGTGGTATTTGGCCAAAAGCGCGTGG
AAACAATCGAAGTGACATGGCACGGCAAAGGAAGCGAGGATAAGCGGGGG
CAGGATATTCGTCCCGGGATCGAATCCGGATCCTGGCTCTACTTGGGTG
BO08709.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:28:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13778-PC | 2292 | Mnn1-RC | 1..733 | 17..749 | 3665 | 100 | Plus |
CG13778-PB | 1593 | Mnn1-RB | 1..733 | 17..749 | 3665 | 100 | Plus |
CG13778-PA | 2292 | Mnn1-RA | 1..733 | 17..749 | 3665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:15:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mnn1-RA | 4275 | CG13778-RA | 1039..1772 | 16..749 | 3670 | 100 | Plus |
Mnn1-RB | 1927 | CG13778-RB | 295..1028 | 16..749 | 3670 | 100 | Plus |
Mnn1-RC | 5196 | CG13778-RC | 1039..1772 | 16..749 | 3670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:15:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7057861..7058327 | 282..748 | 2335 | 100 | Plus |
2L | 23513712 | 2L | 7057406..7057677 | 16..287 | 1360 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:15:12 has no hits.
BO08709.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:52:50 Download gff for
BO08709.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mnn1-PA | 1..733 | 17..749 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:49:44 Download gff for
BO08709.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13778-PA | 1..733 | 17..749 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:53:22 Download gff for
BO08709.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mnn1-RC | 1039..1772 | 16..749 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:49:22 Download gff for
BO08709.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mnn1-RC | 1039..1772 | 16..749 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:49:22 Download gff for
BO08709.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7057406..7057674 | 16..284 | 100 | -> | Plus |
2L | 7057864..7058327 | 285..749 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:53:22 Download gff for
BO08709.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7057406..7057674 | 16..284 | 100 | -> | Plus |
arm_2L | 7057864..7058327 | 285..749 | 99 | | Plus |
BO08709.complete Sequence
1624 bp (1624 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631269
> BO08709.complete
GAAGTTATCAGTCGACATGTCCACGATTACCAGAAGCGCTAGCGCAAGTC
CTATGGCGCTGAACGGCGTCATCGATGCCAGCCTGTTCCCCCTAAAGTCC
ACGGCCGATGTTATCAATCTGTTCCGTCGCGCTCTAACCTCTGGAATCGA
GCCTGATCTCACCCTGCTCTCCATTGTCGTTGGATACATCGAGCTGTCTT
TGACGACGGGAGAGGCTGCTGCGCAGGCCGCTCAAGCCGCCGCGGCCGCA
GTCGCAGCAGGTGACATTAGTCAGGCGACGACAGGTGGAAATGACATCAT
CATGGGCAACAGCGTCCCGTTTCCAGTTGTTACCCACGAACTGATCGCCG
GGCTGTATAAGAAGTTCCAGACGATCCTGTCGGTGGTCGAGAAGCCCAAG
CCCCACCGCCAAGCCACCCGCGAGGTGATCAAGAAGGTGTCGGATGTGAT
CTGGAACTCGCTGATCCGCAGCAGCTACAAGGATCGGGCTCACTTGCAAA
ACCTCTACAGCTATCTGTCCGGCAACAAGTTGGACTGCTTCGGCGTTGCT
CTGGCTGTGGTGGCGGGTTGCCAGTTGCTTGGCTACAAGGACGTGCGACT
GGCCATCTCCGAGGATCATGCCTGGGTGGTATTTGGCCAAAAGCGCGTGG
AAACAATCGAAGTGACATGGCACGGCAAAGGAAGCGAGGATAAGCGGGGG
CAGGATATTCGTCCCGGGATCGAATCCGGATCCTGGCTCTACTTGGGTGG
CCTGGCGGTGGTTTGCGAGCGTGGCATGGAAGTGGCGGCCATCTGTGCCG
CTCTGAATATTTCATTGACCTCGAACAGTGACTGCGTGGAGGTGGCAGAG
CTTCAACAGCAGTTGCTGTGGCTACTCTACGATTTGGGCCACCTCAAACG
CTATCCGATGGCCCTGGGCACCCTAGGCGAGCTGGAGGAGATTCATCGCA
CGCATCCCAGCATCAGTTGCGAGCAGTTATATCGCGAGGCTATAGAGTCG
GCGAGGACCCACTATCGGAACCATCACGTATATCCGTATACCTACCAGGG
GAACTACTACAATCGATTGCTCAAATACCGCGACGCCTTTGCCGCATGGG
CAAATGCGGCGGACGTTATTCGTTTGTATACGTATCAGTGTCGTGATGAC
GAGGAGATCTACAAGGAGCTATTGGACATTGCCAACGAGCTCATACCGTA
CGTGATGAAAACAGAAAGTTCTGGTCATTCGGCGAGAAGTATTCTACGAG
ATTCTGAGGTTTTCGCCAATTTGCTGCGATTCTACGACGGCATCTGCCAA
TGGGAGGAGGATAGCTTGACTCCCATTCTACACATTGGTTGGGCCAAACC
ACTGGTGAATAATATCACCAAGTTCGATTACGACATTAGGTCCCAGGTGG
TCATCAAGTTGCCCGAGGATCTGGAGGCGGAGCAGGCGAAGGCGGAACTG
GCGAGGGCGGAACAGGAAGCAAAGGAAGCTAAGGAGTCGAAGGAAGCTGC
AGGATCAGAGGCAATGGAAGGCAATAACAATAGGATGGCCACAAAGGAGG
AGGTAAGCATACTCATTACTTCACATTATAAATTTTATTTAACACTTCAG
TCCAGTGCAAGCTTTCTAGACCAT
BO08709.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:03:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mnn1-RB | 1593 | CG13778-PB | 1..1590 | 17..1606 | 7950 | 100 | Plus |
Mnn1-RA | 2292 | CG13778-PA | 1..1536 | 17..1552 | 7680 | 100 | Plus |
Mnn1-RC | 2292 | CG13778-PC | 1..1536 | 17..1552 | 7680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mnn1-RB | 1927 | CG13778-RB | 295..1885 | 16..1606 | 7955 | 100 | Plus |
Mnn1-RA | 4275 | CG13778-RA | 1039..2575 | 16..1552 | 7685 | 100 | Plus |
Mnn1-RC | 5196 | CG13778-RC | 1039..2575 | 16..1552 | 7685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7058392..7059252 | 746..1606 | 4305 | 100 | Plus |
2L | 23513712 | 2L | 7057861..7058327 | 282..748 | 2335 | 100 | Plus |
2L | 23513712 | 2L | 7057406..7057677 | 16..287 | 1360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:03:07 has no hits.
BO08709.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:53 Download gff for
BO08709.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mnn1-RB | 1..1593 | 17..1609 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:30:08 Download gff for
BO08709.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mnn1-RB | 290..1884 | 16..1610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:33 Download gff for
BO08709.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mnn1-RB | 296..1885 | 17..1608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:53 Download gff for
BO08709.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mnn1-RB | 290..1884 | 16..1610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:49 Download gff for
BO08709.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mnn1-RB | 296..1885 | 17..1608 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:49 Download gff for
BO08709.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7057407..7057674 | 17..284 | 100 | -> | Plus |
2L | 7057864..7058325 | 285..746 | 100 | -> | Plus |
2L | 7058393..7059252 | 747..1608 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:33 Download gff for
BO08709.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7057407..7057674 | 17..284 | 100 | -> | Plus |
arm_2L | 7057864..7058325 | 285..746 | 100 | -> | Plus |
arm_2L | 7058393..7059252 | 747..1608 | 99 | | Plus |
BO08709.pep Sequence
Translation from 16 to 1624
> BO08709.pep
MSTITRSASASPMALNGVIDASLFPLKSTADVINLFRRALTSGIEPDLTL
LSIVVGYIELSLTTGEAAAQAAQAAAAAVAAGDISQATTGGNDIIMGNSV
PFPVVTHELIAGLYKKFQTILSVVEKPKPHRQATREVIKKVSDVIWNSLI
RSSYKDRAHLQNLYSYLSGNKLDCFGVALAVVAGCQLLGYKDVRLAISED
HAWVVFGQKRVETIEVTWHGKGSEDKRGQDIRPGIESGSWLYLGGLAVVC
ERGMEVAAICAALNISLTSNSDCVEVAELQQQLLWLLYDLGHLKRYPMAL
GTLGELEEIHRTHPSISCEQLYREAIESARTHYRNHHVYPYTYQGNYYNR
LLKYRDAFAAWANAADVIRLYTYQCRDDEEIYKELLDIANELIPYVMKTE
SSGHSARSILRDSEVFANLLRFYDGICQWEEDSLTPILHIGWAKPLVNNI
TKFDYDIRSQVVIKLPEDLEAEQAKAELARAEQEAKEAKESKEAAGSEAM
EGNNNRMATKEEVSILITSHYKFYLTLQSSASFLDH
BO08709.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mnn1-PB | 530 | CG13778-PB | 1..530 | 1..530 | 2715 | 100 | Plus |
Mnn1-PA | 763 | CG13778-PA | 1..514 | 1..514 | 2629 | 99.8 | Plus |
Mnn1-PC | 763 | CG13778-PC | 1..514 | 1..514 | 2629 | 99.8 | Plus |