Clone BO08709 Report

Search the DGRC for BO08709

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:87
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptMnn1-RB
Protein status:BO08709.pep: validated full length
Sequenced Size:1624

Clone Sequence Records

BO08709.3prime Sequence

822 bp (797 high quality bases) assembled on 2006-01-09

> BO08709.3prime
ATGGTCTAGAAAGCTTGCACTGGACTGAAGTGTTAAATAAAATTTATAAT
GTGAAGTAATGAGTATGCTTACCTCCTCCTTTGTGGCCATCCTATTGTTA
TTGCCTTCCATTGCCTCTGATCCTGCAGCTTCCTTCGACTCCTTAGCTTC
CTTTGCTTCCTGTTCCGCCCTCGCCAGTTCCGCCTTCGCCTGCTCCGCCT
CCAGATCCTCGGGCAACTTGATGACCACCTGGGACCTAATGTCGTAATCG
AACTTGGTGATATTATTCACCAGTGGTTTGGCCCAACCAATGTGTAGAAT
GGGAGTCAAGCTATCCTCCTCCCATTGGCAGATGCCGTCGTAGAATCGCA
GCAAATTGGCGAAAACCTCAGAATCTCGTAGAATACTTCTCGCCGAATGA
CCAGAACTTTCTGTTTTCATCACGTACGGTATGAGCTCGTTGGCAATGTC
CAATAGCTCCTTGTAGATCTCCTCGTCATCACGACACTGATACGTATACA
AACGAATAACGTCCGCCGCATTTGCCCATGCGGCAAAGGCGTCGCGGTAT
TTGAGCAATCGATTGTAGTAGTTCCCCTGGTAGGTATACGGATATACGTG
ATGGTTCCGATAGTGGGTCCTCGCCGACTCTATAGCCTCGCGATATAACT
GCTCGCAACTGATGCTGGGATGCGTGCGATGAATCTCCTCCAGCTCGCCT
AGGGTGCCCAGGGCCATCGGATAGCGTTTGAGGTGGCCCAAATCGTAGAG
TAGCCACAGCAACTGCTGTTGAAGCTCTGCCACCTCCACGCAGTCACTGT
TCGAGGTCAATGAAATATTCAA

BO08709.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:28:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG13778-PB 1593 Mnn1-RB 788..1590 821..19 4015 100 Minus
CG13778-PC 2292 Mnn1-RC 788..1536 821..73 3745 100 Minus
CG13778-PA 2292 Mnn1-RA 788..1536 821..73 3745 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
Mnn1-RB 1927 CG13778-RB 1083..1885 821..19 4015 100 Minus
Mnn1-RA 4275 CG13778-RA 1827..2575 821..73 3745 100 Minus
Mnn1-RC 5196 CG13778-RC 1827..2575 821..73 3745 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7058450..7059252 821..19 4015 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:22:39 has no hits.

BO08709.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:52:49 Download gff for BO08709.3prime
Subject Subject Range Query Range Percent Splice Strand
Mnn1-PB 789..1593 16..820 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:49:43 Download gff for BO08709.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13778-PB 789..1593 16..820 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:12:35 Download gff for BO08709.3prime
Subject Subject Range Query Range Percent Splice Strand
Mnn1-RB 1084..1889 15..820 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:10:44 Download gff for BO08709.3prime
Subject Subject Range Query Range Percent Splice Strand
Mnn1-RB 1084..1889 15..820 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:10:44 Download gff for BO08709.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7058451..7059256 15..820 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:12:35 Download gff for BO08709.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7058451..7059256 15..820 99   Minus

BO08709.5prime Sequence

749 bp (747 high quality bases) assembled on 2006-01-09

> BO08709.5prime
GAAGTTATCAGTCGACATGTCCACGATTACCAGAAGCGCTAGCGCAAGTC
CTATGGCGCTGAACGGCGTCATCGATGCCAGCCTGTTCCCCCTAAAGTCC
ACGGCCGATGTTATCAATCTGTTCCGTCGCGCTCTAACCTCTGGAATCGA
GCCTGATCTCACCCTGCTCTCCATTGTCGTTGGATACATCGAGCTGTCTT
TGACGACGGGAGAGGCTGCTGCGCAGGCCGCTCAAGCCGCCGCGGCCGCA
GTCGCAGCAGGTGACATTAGTCAGGCGACGACAGGTGGAAATGACATCAT
CATGGGCAACAGCGTCCCGTTTCCAGTTGTTACCCACGAACTGATCGCCG
GGCTGTATAAGAAGTTCCAGACGATCCTGTCGGTGGTCGAGAAGCCCAAG
CCCCACCGCCAAGCCACCCGCGAGGTGATCAAGAAGGTGTCGGATGTGAT
CTGGAACTCGCTGATCCGCAGCAGCTACAAGGATCGGGCTCACTTGCAAA
ACCTCTACAGCTATCTGTCCGGCAACAAGTTGGACTGCTTCGGCGTTGCT
CTGGCTGTGGTGGCGGGTTGCCAGTTGCTTGGCTACAAGGACGTGCGACT
GGCCATCTCCGAGGATCATGCCTGGGTGGTATTTGGCCAAAAGCGCGTGG
AAACAATCGAAGTGACATGGCACGGCAAAGGAAGCGAGGATAAGCGGGGG
CAGGATATTCGTCCCGGGATCGAATCCGGATCCTGGCTCTACTTGGGTG

BO08709.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:28:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG13778-PC 2292 Mnn1-RC 1..733 17..749 3665 100 Plus
CG13778-PB 1593 Mnn1-RB 1..733 17..749 3665 100 Plus
CG13778-PA 2292 Mnn1-RA 1..733 17..749 3665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:15:15
Subject Length Description Subject Range Query Range Score Percent Strand
Mnn1-RA 4275 CG13778-RA 1039..1772 16..749 3670 100 Plus
Mnn1-RB 1927 CG13778-RB 295..1028 16..749 3670 100 Plus
Mnn1-RC 5196 CG13778-RC 1039..1772 16..749 3670 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:15:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7057861..7058327 282..748 2335 100 Plus
2L 23513712 2L 7057406..7057677 16..287 1360 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:15:12 has no hits.

BO08709.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:52:50 Download gff for BO08709.5prime
Subject Subject Range Query Range Percent Splice Strand
Mnn1-PA 1..733 17..749 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:49:44 Download gff for BO08709.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13778-PA 1..733 17..749 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:53:22 Download gff for BO08709.5prime
Subject Subject Range Query Range Percent Splice Strand
Mnn1-RC 1039..1772 16..749 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:49:22 Download gff for BO08709.5prime
Subject Subject Range Query Range Percent Splice Strand
Mnn1-RC 1039..1772 16..749 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:49:22 Download gff for BO08709.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7057406..7057674 16..284 100 -> Plus
2L 7057864..7058327 285..749 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:53:22 Download gff for BO08709.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7057406..7057674 16..284 100 -> Plus
arm_2L 7057864..7058327 285..749 99   Plus

BO08709.complete Sequence

1624 bp (1624 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ631269

> BO08709.complete
GAAGTTATCAGTCGACATGTCCACGATTACCAGAAGCGCTAGCGCAAGTC
CTATGGCGCTGAACGGCGTCATCGATGCCAGCCTGTTCCCCCTAAAGTCC
ACGGCCGATGTTATCAATCTGTTCCGTCGCGCTCTAACCTCTGGAATCGA
GCCTGATCTCACCCTGCTCTCCATTGTCGTTGGATACATCGAGCTGTCTT
TGACGACGGGAGAGGCTGCTGCGCAGGCCGCTCAAGCCGCCGCGGCCGCA
GTCGCAGCAGGTGACATTAGTCAGGCGACGACAGGTGGAAATGACATCAT
CATGGGCAACAGCGTCCCGTTTCCAGTTGTTACCCACGAACTGATCGCCG
GGCTGTATAAGAAGTTCCAGACGATCCTGTCGGTGGTCGAGAAGCCCAAG
CCCCACCGCCAAGCCACCCGCGAGGTGATCAAGAAGGTGTCGGATGTGAT
CTGGAACTCGCTGATCCGCAGCAGCTACAAGGATCGGGCTCACTTGCAAA
ACCTCTACAGCTATCTGTCCGGCAACAAGTTGGACTGCTTCGGCGTTGCT
CTGGCTGTGGTGGCGGGTTGCCAGTTGCTTGGCTACAAGGACGTGCGACT
GGCCATCTCCGAGGATCATGCCTGGGTGGTATTTGGCCAAAAGCGCGTGG
AAACAATCGAAGTGACATGGCACGGCAAAGGAAGCGAGGATAAGCGGGGG
CAGGATATTCGTCCCGGGATCGAATCCGGATCCTGGCTCTACTTGGGTGG
CCTGGCGGTGGTTTGCGAGCGTGGCATGGAAGTGGCGGCCATCTGTGCCG
CTCTGAATATTTCATTGACCTCGAACAGTGACTGCGTGGAGGTGGCAGAG
CTTCAACAGCAGTTGCTGTGGCTACTCTACGATTTGGGCCACCTCAAACG
CTATCCGATGGCCCTGGGCACCCTAGGCGAGCTGGAGGAGATTCATCGCA
CGCATCCCAGCATCAGTTGCGAGCAGTTATATCGCGAGGCTATAGAGTCG
GCGAGGACCCACTATCGGAACCATCACGTATATCCGTATACCTACCAGGG
GAACTACTACAATCGATTGCTCAAATACCGCGACGCCTTTGCCGCATGGG
CAAATGCGGCGGACGTTATTCGTTTGTATACGTATCAGTGTCGTGATGAC
GAGGAGATCTACAAGGAGCTATTGGACATTGCCAACGAGCTCATACCGTA
CGTGATGAAAACAGAAAGTTCTGGTCATTCGGCGAGAAGTATTCTACGAG
ATTCTGAGGTTTTCGCCAATTTGCTGCGATTCTACGACGGCATCTGCCAA
TGGGAGGAGGATAGCTTGACTCCCATTCTACACATTGGTTGGGCCAAACC
ACTGGTGAATAATATCACCAAGTTCGATTACGACATTAGGTCCCAGGTGG
TCATCAAGTTGCCCGAGGATCTGGAGGCGGAGCAGGCGAAGGCGGAACTG
GCGAGGGCGGAACAGGAAGCAAAGGAAGCTAAGGAGTCGAAGGAAGCTGC
AGGATCAGAGGCAATGGAAGGCAATAACAATAGGATGGCCACAAAGGAGG
AGGTAAGCATACTCATTACTTCACATTATAAATTTTATTTAACACTTCAG
TCCAGTGCAAGCTTTCTAGACCAT

BO08709.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:03:08
Subject Length Description Subject Range Query Range Score Percent Strand
Mnn1-RB 1593 CG13778-PB 1..1590 17..1606 7950 100 Plus
Mnn1-RA 2292 CG13778-PA 1..1536 17..1552 7680 100 Plus
Mnn1-RC 2292 CG13778-PC 1..1536 17..1552 7680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:09
Subject Length Description Subject Range Query Range Score Percent Strand
Mnn1-RB 1927 CG13778-RB 295..1885 16..1606 7955 100 Plus
Mnn1-RA 4275 CG13778-RA 1039..2575 16..1552 7685 100 Plus
Mnn1-RC 5196 CG13778-RC 1039..2575 16..1552 7685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7058392..7059252 746..1606 4305 100 Plus
2L 23513712 2L 7057861..7058327 282..748 2335 100 Plus
2L 23513712 2L 7057406..7057677 16..287 1360 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:03:07 has no hits.

BO08709.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:53 Download gff for BO08709.complete
Subject Subject Range Query Range Percent Splice Strand
Mnn1-RB 1..1593 17..1609 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:30:08 Download gff for BO08709.complete
Subject Subject Range Query Range Percent Splice Strand
Mnn1-RB 290..1884 16..1610 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:33 Download gff for BO08709.complete
Subject Subject Range Query Range Percent Splice Strand
Mnn1-RB 296..1885 17..1608 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:53 Download gff for BO08709.complete
Subject Subject Range Query Range Percent Splice Strand
Mnn1-RB 290..1884 16..1610 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:49 Download gff for BO08709.complete
Subject Subject Range Query Range Percent Splice Strand
Mnn1-RB 296..1885 17..1608 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:49 Download gff for BO08709.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7057407..7057674 17..284 100 -> Plus
2L 7057864..7058325 285..746 100 -> Plus
2L 7058393..7059252 747..1608 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:33 Download gff for BO08709.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7057407..7057674 17..284 100 -> Plus
arm_2L 7057864..7058325 285..746 100 -> Plus
arm_2L 7058393..7059252 747..1608 99   Plus

BO08709.pep Sequence

Translation from 16 to 1624

> BO08709.pep
MSTITRSASASPMALNGVIDASLFPLKSTADVINLFRRALTSGIEPDLTL
LSIVVGYIELSLTTGEAAAQAAQAAAAAVAAGDISQATTGGNDIIMGNSV
PFPVVTHELIAGLYKKFQTILSVVEKPKPHRQATREVIKKVSDVIWNSLI
RSSYKDRAHLQNLYSYLSGNKLDCFGVALAVVAGCQLLGYKDVRLAISED
HAWVVFGQKRVETIEVTWHGKGSEDKRGQDIRPGIESGSWLYLGGLAVVC
ERGMEVAAICAALNISLTSNSDCVEVAELQQQLLWLLYDLGHLKRYPMAL
GTLGELEEIHRTHPSISCEQLYREAIESARTHYRNHHVYPYTYQGNYYNR
LLKYRDAFAAWANAADVIRLYTYQCRDDEEIYKELLDIANELIPYVMKTE
SSGHSARSILRDSEVFANLLRFYDGICQWEEDSLTPILHIGWAKPLVNNI
TKFDYDIRSQVVIKLPEDLEAEQAKAELARAEQEAKEAKESKEAAGSEAM
EGNNNRMATKEEVSILITSHYKFYLTLQSSASFLDH

BO08709.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:35
Subject Length Description Subject Range Query Range Score Percent Strand
Mnn1-PB 530 CG13778-PB 1..530 1..530 2715 100 Plus
Mnn1-PA 763 CG13778-PA 1..514 1..514 2629 99.8 Plus
Mnn1-PC 763 CG13778-PC 1..514 1..514 2629 99.8 Plus