Clone BO08711 Report

Search the DGRC for BO08711

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:87
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptEcR-RB
Protein status:BO08711.pep: Imported from assembly
Sequenced Size:2668

Clone Sequence Records

BO08711.complete Sequence

2668 bp assembled on 2009-10-20

GenBank Submission: KX799318

> BO08711.complete
GAAGTTATCAGTCGATATGAAGCGGCGCTGGTCGAACAACGGCGGCTTCA
TGCGCCTACCGGAGGAGTCGTCCTCGGAGGTCACGTCCTCCTCGAACGGG
CTCGTCCTGCCCTCGGGGGTGAACATGTCGCCCTCGTCGCTGGACTCGCA
CGACTATTGCGATCAGGACCTTTGGCTCTGCGGCAACGAGTCCGGTTCGT
TTGGCGGCTCCAACGGCCATGGCCTAAGTCAGCAGCAGCAGAGCGTCATC
ACGCTGGCCATGCACGGGTGCTCCAGCACTCTGCCCGCGCAGACAACCAT
CATTCCGATCAACGGCAACGCGAATGGGAATGGAGGCTCCACCAATGGCC
AATATGTGCCGGGTGCCACTAATCTGGGAGCGTTGGCCAACGGGATGCTC
AATGGGGGCTTCAATGGAATGCAGCAACAGATTCAGAATGGCCACGGCCT
CATCAACTCCACAACGCCCTCAACGCCGACCACCCCGCTCCACCTTCAGC
AGAACCTGGGGGGCGCGGGCGGCGGCGGTATCGGGGGAATGGGTATTCTT
CACCACGCGAATGGCACCCCAAATGGCCTTATCGGAGTTGTGGGAGGCGG
CGGCGGAGTAGGTCTTGGAGTAGGCGGAGGCGGAGTGGGAGGCCTGGGAA
TGCAGCACACACCCCGAAGCGATTCGGTGAATTCTATATCTTCAGGTCGC
GATGATCTCTCGCCTTCGAGCAGCTTGAACGGATACTCGGCGAACGAAAG
CTGCGATGCGAAGAAGAGCAAGAAGGGACCTGCGCCACGGGTGCAAGAGG
AGCTGTGCCTGGTTTGCGGCGACAGGGCCTCCGGCTACCACTACAACGCC
CTCACCTGTGAGGGCTGCAAGGGGTTCTTTCGACGCAGCGTTACGAAGAG
CGCCGTCTACTGCTGCAAGTTCGGGCGCGCCTGCGAAATGGACATGTACA
TGAGGCGAAAGTGTCAGGAGTGCCGCCTGAAAAAGTGCCTGGCCGTGGGT
ATGCGGCCGGAATGCGTCGTCCCGGAGAACCAATGTGCGATGAAGCGGCG
CGAAAAGAAGGCCCAGAAGGAGAAGGACAAAATGACCACTTCGCCGAGCT
CTCAGCATGGCGGCAATGGCAGCTTGGCCTCTGGTGGCGGCCAAGACTTT
GTTAAGAAGGAGATTCTTGACCTTATGACATGCGAGCCGCCCCAGCATGC
CACTATTCCGCTACTACCTGATGAAATATTGGCCAAGTGTCAAGCGCGCA
ATATACCTTCCTTAACGTACAATCAGTTGGCCGTTATATACAAGTTAATT
TGGTACCAGGATGGCTATGAGCAGCCATCTGAAGAGGATCTCAGGCGTAT
AATGAGTCAACCCGATGAGAACGAGAGCCAAACGGACGTCAGCTTTCGGC
ATATAACCGAGATAACCATACTCACGGTCCAGTTGATTGTTGAGTTTGCT
AAAGGTCTACCAGCGTTTACAAAGATACCCCAGGAGGACCAGATCACGTT
ACTAAAGGCCTGCTCGTCGGAGGTGATGATGCTGCGTATGGCACGACGCT
ATGACCACAGCTCGGACTCAATATTCTTCGCGAATAATAGATCATATACG
CGGGATTCTTACAAAATGGCCGGAATGGCTGATAACATTGAAGACCTGCT
GCATTTCTGCCGCCAAATGTTCTCGATGAAGGTGGACAACGTCGAATACG
CGCTTCTCACTGCCATTGTGATCTTCTCGGACCGGCCGGGCCTGGAGAAG
GCCCAACTAGTCGAAGCGATCCAGAGCTACTACATCGACACGCTACGCAT
TTATATACTCAACCGCCACTGCGGCGACTCAATGAGCCTCGTCTTCTACG
CAAAGCTGCTCTCGATCCTCACCGAGCTGCGTACGCTGGGCAACCAGAAC
GCCGAGATGTGTTTCTCACTAAAGCTCAAAAACCGCAAACTGCCCAAGTT
CCTCGAGGAGATCTGGGACGTTCATGCCATCCCGCCATCGGTCCAGTCGC
ACCTTCAGATTACCCAGGAGGAGAACGAGCGTCTCGAGCGGGCTGAGCGT
ATGCGGGCATCGGTTGGGGGCGCCATTACCGCCGGCATTGATTGCGACTC
TGCCTCCACTTCGGCGGCGGCAGCCGCGGCCCAGCATCAGCCTCAGCCTC
AGCCCCAGCCCCAACCCTCCTCCCTGACCCAGAACGATTCCCAGCACCAG
ACACAGCCGCAGCTACAACCTCAGCTACCACCTCAGCTGCAAGGTCAACT
GCAACCCCAGCTCCAACCACAGCTTCAGACGCAACTCCAGCCACAGATTC
AACCACAGCCACAGCTCCTTCCCGTCTCCGCTCCCGTGCCCGCCTCCGTA
ACCGCACCTGGTTCCTTGTCCGCGGTCAGTACGAGCAGCGAATACATGGG
CGGAAGTGCGGCCATAGGACCCATCACGCCGGCAACCACCAGCAGTATCA
CGGCTGCCGTTACCGCTAGCTCCACCACATCAGCGGTACCGATGGGCAAC
GGAGTTGGAGTCGGTGTTGGGGTGGGCGGCAACGTCAGCATGTATGCGAA
CGCCCAGACGGCGATGGCCTTGATGGGTGTAGCCCTGCATTCGCACCAAG
AGCAGCTTATCGGGGGAGTGGCGGTTAAGTCGGAGCACTCGACGACTGCA
GCAAGCTTTCTAGACCAT

BO08711.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
EcR-RG 2637 CG1765-PG 1..2634 17..2650 13170 100 Plus
EcR-RB 2637 CG1765-PB 1..2634 17..2650 13170 100 Plus
EcR-RE 2550 CG1765-PE 590..2547 693..2650 9790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:37:11
Subject Length Description Subject Range Query Range Score Percent Strand
EcR-RG 8415 CG1765-RG 1064..3697 17..2650 13170 100 Plus
EcR-RB 4092 CG1765-RB 1145..3778 17..2650 13170 100 Plus
EcR-RE 5233 CG1765-RE 1104..3061 693..2650 9790 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6092591..6093735 2650..1506 5725 100 Minus
2R 25286936 2R 6122880..6123560 697..17 3405 100 Minus
2R 25286936 2R 6094557..6095074 1210..693 2590 100 Minus
2R 25286936 2R 6093796..6093950 1508..1354 775 100 Minus
2R 25286936 2R 6094010..6094154 1354..1210 725 100 Minus
Blast to na_te.dros performed 2014-11-27 08:37:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2277..2545 2042..2319 206 58.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2373..2545 2109..2274 164 57.8 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3228..3345 2195..2318 130 58.1 Plus
Rt1b 5171 Rt1b RT1B 5150bp 2272..2306 1140..1106 121 82.9 Minus

BO08711.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-20 10:49:44 Download gff for BO08711.complete
Subject Subject Range Query Range Percent Splice Strand
EcR-RB 1142..3775 17..2652 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:12:18 Download gff for BO08711.complete
Subject Subject Range Query Range Percent Splice Strand
EcR-RB 1145..3778 17..2652 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:23:22 Download gff for BO08711.complete
Subject Subject Range Query Range Percent Splice Strand
EcR-RB 1145..3778 17..2652 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:23:22 Download gff for BO08711.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6092587..6093733 1508..2652 99 <- Minus
2R 6093797..6093949 1355..1507 100 <- Minus
2R 6094010..6094153 1211..1354 100 <- Minus
2R 6094557..6095071 696..1210 100 <- Minus
2R 6122882..6123560 17..695 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:12:18 Download gff for BO08711.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1980092..1981238 1508..2652 99 <- Minus
arm_2R 1981302..1981454 1355..1507 100 <- Minus
arm_2R 1981515..1981658 1211..1354 100 <- Minus
arm_2R 1982062..1982576 696..1210 100 <- Minus
arm_2R 2010387..2011065 17..695 100   Minus

BO08711.3prime Sequence

874 bp (786 high quality bases) assembled on 2006-01-09

> BO08711.3prime
ATGGTCTAGAAAGCTTGCTGCAGTCGTCGAGTGCTCCGACTTAACCGCCA
CTCCCCCGATAAGCTGCTCTTGGTGCGAATGCAGGGCTACACCCATCAAG
GCCATCGCCGTCTGGGCGTTCGCATACATGCTGACGTTGCCGCCCACCCC
AACACCGACTCCAACTCCGTTGCCCATCGGTACCGCTGATGTGGTGGAGC
TAGCGGTAACGGCAGCCGTGATACTGCTGGTGGTTGCCGGCGTGATGGGT
CCTATGGCCGCACTTCCGCCCATGTATTCGCTGCTCGTACTGACCGCGGA
CAAGGAACCAGGTGCGGTTACGGAGGCGGGCACGGGAGCGGAGACGGGAA
GGAGCTGTGGCTGTGGTTGAATCTGTGGCTGGAGTTGCGTCTGAAGCTGT
GGTTGGAGCTGGGGTTGCAGTTGACCTTGCAGCTGAGGTGGTAGCTGAGG
TTGTAGCTGCGGCTGTGTCTGGTGCTGGGAATCGTTCTGGGTCAGGGAGG
AGGGTTGGGGCTGGGGCTGAGGCTGAGGCTGATGCTGGGCCGCGGCTGCC
GCCGCCGAAGTGGAGGCAGAGTCGCAATCAATGCCGGCGGTAATGGCGCC
CCCAACCGATGCCCGCATACGCTCAGCCCGCTCGAGACGCTCGTTCTCCT
CCTGGGTAATCTGAAGGTGCGACTGGACCGATGGCGGGATGGCATGAACG
TCCCAGATCTCCTCGAGGAACTTGGGCAGTTTGCGGTTTTTGAGCTTTAG
TGAGAAACACATCTCGGCGTTCTGGTTGCCCAGCGTACGCAGCTCGGTGA
GGATCGAGAGCAACTTTGCGTAAAAGACGAGGCTCATTGAGTCGCCGCAA
TGGCGGTTGAATATAAAAATGCGT

BO08711.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:28:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG1765-PA 2550 EcR-RA 1692..2547 874..19 4155 99.4 Minus
CG1765-PD 2550 EcR-RD 1692..2547 874..19 4155 99.4 Minus
CG1765-PE 2550 EcR-RE 1692..2547 874..19 4155 99.4 Minus
CG1765-PB 2637 EcR-RB 1779..2634 874..19 4155 99.4 Minus
CG1765-PC 2010 EcR-RC 1152..2007 874..19 4155 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:46:13
Subject Length Description Subject Range Query Range Score Percent Strand
EcR-RG 8415 CG1765-RG 2842..3697 874..19 4205 99.4 Minus
EcR-RC 4984 CG1765-RC 1957..2812 874..19 4205 99.4 Minus
EcR-RB 4092 CG1765-RB 2923..3778 874..19 4205 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:46:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6092591..6093446 19..874 4205 99.4 Plus
Blast to na_te.dros performed 2015-02-12 11:46:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2277..2545 627..350 206 58.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2373..2545 560..395 164 57.8 Minus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3228..3345 474..351 130 58.1 Minus

BO08711.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 03:52:51 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:49:45 Download gff for BO08711.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1765-PC 1152..2010 18..874 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:33:21 Download gff for BO08711.3prime
Subject Subject Range Query Range Percent Splice Strand
EcR-RB 2923..3782 13..874 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:59:24 Download gff for BO08711.3prime
Subject Subject Range Query Range Percent Splice Strand
EcR-RB 2923..3782 13..874 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:59:24 Download gff for BO08711.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6092583..6093446 13..874 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:33:21 Download gff for BO08711.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1980088..1980951 13..874 99   Plus

BO08711.5prime Sequence

859 bp (761 high quality bases) assembled on 2006-01-09

> BO08711.5prime
GAAGTTATCAGTCGATATGAAGCGGCGCTGGTCGAACAACGGCGGCTTCA
TGCGCCTACCGGAGGAGTCGTCCTCGGAGGTCACGTCCTCCTCGAACGGG
CTCGTCCTGCCCTCGGGGGTGAACATGTCGCCCTCGTCGCTGGACTCGCA
CGACTATTGCGATCAGGACCTTTGGCTCTGCGGCAACGAGTCCGGTTCGT
TTGGCGGCTCCAACGGCCATGGCCTAAGTCAGCAGCAGCAGAGCGTCATC
ACGCTGGCCATGCACGGGTGCTCCAGCACTCTGCCCGCGCAGACAACCAT
CATTCCGATCAACGGCAACGCGAATGGGAATGGAGGCTCCACCAATGGCC
AATATGTGCCGGGTGCCACTAATCTGGGAGCGTTGGCCAACGGGATGCTC
AATGGGGGCTTCAATGGAATGCAGCAACAGATTCAGAATGGCCACGGCCT
CATCAACTCCACAACGCCCTCAACGCCGACCACCCCGCTCCACCTTCAGC
AGAACCTGGGGGGCGCGGGCGGCGGCGGTATCGGGGGAATGGGTATTCTT
CACCACGCGAATGGCACCCCAAATGGCCTTATCGGAGTTGTGGGAGGCGG
CGGCGGAGTAGGTCTTGGAGTAGGCGGAGGCGGAGTGGGAGGCCTGGGAA
TGCAGCACACACCCCGAAGCGATTCGGTGAATTCTATATCTTCAGGTCGC
GATGATCTCTCGCCTTCGAGCAGCTTGAACGGATACTCGGCGAACGAAAG
CTGCGATGCGAAGAAGAGCAAGAAGGGACCTGCGCCACGGGTGCAAGAGG
AGCTGTGCCTGGTTTGCGGCGACAGGGCCTCCGGCTACCACTACAACGCC
CTCACCTGT

BO08711.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG1765-PB 2637 EcR-RB 1..843 17..859 4215 100 Plus
CG1765-PA 2550 EcR-RA 590..756 693..859 835 100 Plus
CG1765-PD 2550 EcR-RD 590..756 693..859 835 100 Plus
CG1765-PE 2550 EcR-RE 590..756 693..859 835 100 Plus
CG1765-PC 2010 EcR-RC 52..216 695..859 825 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:18:29
Subject Length Description Subject Range Query Range Score Percent Strand
EcR-RG 8415 CG1765-RG 1064..1906 17..859 4215 100 Plus
EcR-RB 4092 CG1765-RB 1145..1987 17..859 4215 100 Plus
EcR-RE 5233 CG1765-RE 1104..1270 693..859 835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:18:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6122880..6123560 697..17 3405 100 Minus
2R 25286936 2R 6094908..6095074 859..693 835 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:18:26 has no hits.

BO08711.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 03:52:52 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:49:46 Download gff for BO08711.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1765-PB 1..843 17..859 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:29:03 Download gff for BO08711.5prime
Subject Subject Range Query Range Percent Splice Strand
EcR-RB 1139..1987 9..859 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:38:34 Download gff for BO08711.5prime
Subject Subject Range Query Range Percent Splice Strand
EcR-RB 1139..1987 9..859 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:38:34 Download gff for BO08711.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6094908..6095071 696..859 100 <- Minus
2R 6122882..6123563 11..695 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:29:03 Download gff for BO08711.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1982413..1982576 696..859 100 <- Minus
arm_2R 2010387..2011068 11..695 99 <- Minus

BO08711.pep Sequence

Translation from 16 to 2668

> BO08711.pep
MKRRWSNNGGFMRLPEESSSEVTSSSNGLVLPSGVNMSPSSLDSHDYCDQ
DLWLCGNESGSFGGSNGHGLSQQQQSVITLAMHGCSSTLPAQTTIIPING
NANGNGGSTNGQYVPGATNLGALANGMLNGGFNGMQQQIQNGHGLINSTT
PSTPTTPLHLQQNLGGAGGGGIGGMGILHHANGTPNGLIGVVGGGGGVGL
GVGGGGVGGLGMQHTPRSDSVNSISSGRDDLSPSSSLNGYSANESCDAKK
SKKGPAPRVQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCC
KFGRACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAMKRREKKAQ
KEKDKMTTSPSSQHGGNGSLASGGGQDFVKKEILDLMTCEPPQHATIPLL
PDEILAKCQARNIPSLTYNQLAVIYKLIWYQDGYEQPSEEDLRRIMSQPD
ENESQTDVSFRHITEITILTVQLIVEFAKGLPAFTKIPQEDQITLLKACS
SEVMMLRMARRYDHSSDSIFFANNRSYTRDSYKMAGMADNIEDLLHFCRQ
MFSMKVDNVEYALLTAIVIFSDRPGLEKAQLVEAIQSYYIDTLRIYILNR
HCGDSMSLVFYAKLLSILTELRTLGNQNAEMCFSLKLKNRKLPKFLEEIW
DVHAIPPSVQSHLQITQEENERLERAERMRASVGGAITAGIDCDSASTSA
AAAAAQHQPQPQPQPQPSSLTQNDSQHQTQPQLQPQLPPQLQGQLQPQLQ
PQLQTQLQPQIQPQPQLLPVSAPVPASVTAPGSLSAVSTSSEYMGGSAAI
GPITPATTSSITAAVTASSTTSAVPMGNGVGVGVGVGGNVSMYANAQTAM
ALMGVALHSHQEQLIGGVAVKSEHSTTAASFLDH

BO08711.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:15:45
Subject Length Description Subject Range Query Range Score Percent Strand
EcR-PG 878 CG1765-PG 1..878 1..878 4579 100 Plus
EcR-PB 878 CG1765-PB 1..878 1..878 4579 100 Plus
EcR-PE 849 CG1765-PE 197..849 226..878 3373 99.8 Plus
EcR-PD 849 CG1765-PD 197..849 226..878 3373 99.8 Plus
EcR-PA 849 CG1765-PA 197..849 226..878 3373 99.8 Plus