Clone BO08717 Report

Search the DGRC for BO08717

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:87
Well:17
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO08717.pep: Imported from assembly
Sequenced Size:2920

Clone Sequence Records

BO08717.3prime Sequence

932 bp (782 high quality bases) assembled on 2006-01-09

> BO08717.3prime
ATGGTCTAGAAAGCTTGCGTCGATGGACTTCATCTTGCAGAGGAAGTTAA
TCGGTAGCAGCTTGATTTCCTCGTTAATCCTGCAGACGAACACATCGCCA
TCCTTGGACAGCACTCTGCCCACGGACTCGCGGTCATCGCCGTAGATGAT
CTTGAATTCGTCGCCATTGCATGGTAGCACTGGCGCCAAGTGCTCACTAA
CGATGGACACACTGCGATCCTCCTGGCGCAGGAATACGGAGCAGACGCCG
TTCGAAACGGTGCGAATGATGCCCGTTTGCCCAACGAGATCGGTGTCGTC
GTGCGTGTGAATCCGAACTTCAATGTCTGTGGTACACCAGTCGCCCATCG
ACGAGTCCAGACTGGCTCCAGGGGTCTGCGGATTGTACGGCGACTGCGGT
ATGCCACCAGGAGTATTCGGTGAATAAGTCGATGGCGACGGAGTGTTCAT
GTAACCAACGGGATACGGCGACGGAGCAGGACTGGGGCTGGGATTGAATG
GACTGTAGCTTCTGTCCGATCCATACAGAGTGCCAGGAGTTTGCGGGGCA
AACTGGGAAGTCATTTGATAGCCAGGGGTACTTGGATTGTATCCAGGGCT
GGGACTGGGCTCCTCAAGGGAGTAATCGAAATCGTTGTTCCTGGCCGGCG
TTGTGTTTGCCGTGGGATCCCAAGCGCCATGACGTGGTGTCATGCTGCCA
TCGTGCGATGGTGTCATTGTACCATAAGGAGTACGAGTATCCGTATCCCA
GTTGGGCGTCTGGCTTCCCACCAACGGAGTTTTCGATCCGGCAGCGGTAT
AACTGGGAGTCTGGGCACCGTAGCCGGGAGTGCGAGCTGGGGTGCGTCCA
TATGTGGAAGAACTGCCCTCTTTACCGGTAACTCCCACAATGCCAATGGG
ATTCCGGTCTACCCAAATCGTCTGGCATGAAG

BO08717.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7626-PA 3237 Spt5-RA 2395..3234 858..19 4200 100 Minus
CG7626-PB 2889 Spt5-RB 2047..2886 858..19 4200 100 Minus
CG7626-PA 3237 Spt5-RA 2323..2391 930..862 270 95.6 Minus
CG7626-PB 2889 Spt5-RB 1975..2043 930..862 270 95.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:21:53
Subject Length Description Subject Range Query Range Score Percent Strand
Spt5-RA 3460 CG7626-RA 2439..3350 930..19 4470 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:21:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19441226..19441788 581..19 2815 100 Minus
2R 25286936 2R 19440819..19441170 930..579 1670 98.3 Minus
Blast to na_te.dros performed on 2015-02-10 23:21:51 has no hits.

BO08717.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:53:00 Download gff for BO08717.3prime
Subject Subject Range Query Range Percent Splice Strand
Spt5-PB 1973..2889 15..932 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:49:56 Download gff for BO08717.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7626-PB 1973..2889 15..932 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:31:04 Download gff for BO08717.3prime
Subject Subject Range Query Range Percent Splice Strand
Spt5-RA 2437..3359 7..932 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:34:21 Download gff for BO08717.3prime
Subject Subject Range Query Range Percent Splice Strand
Spt5-RA 2437..3359 7..932 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:34:21 Download gff for BO08717.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 19440817..19441167 582..932 98 -> Minus
2R 19441226..19441797 7..581 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:31:04 Download gff for BO08717.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15328322..15328672 582..932 98 -> Minus
arm_2R 15328731..15329302 7..581 99   Minus

BO08717.5prime Sequence

929 bp (864 high quality bases) assembled on 2006-01-09

> BO08717.5prime
GAAGTTATCAGTCGACATGTCGGACTCGGAAGTCAGTAATATGTCGGATA
GTGGCTCCGAAGATGGATCCATTTCCAACAAGTCGCAACGGAGTGCCCGC
TCCAAGTCAAGATCGCGTTCCAGGTCCGGTTCCAGGGGATCTCGCTCCGT
TTCCAGGTCCAGATCACGCTCTCAATCGGGCCACTCTAGATCTGGCTCGG
AATCTCCACAGAGACGAGATAATCGCGGCAAGAGCGATGAATCCGGCGAA
GAGGAGGAGGAGCCACCAGGTGAGGACATCGATTCCGAGGAGTACGATGA
GGAGGAGAACGACGATCACCCAAGGAAGAAGAAAAAGAAGGAGCGTTTTG
GGGGCTTCATCATTGACGAGGCCGAAGTGGACGATGAAGTCGATGAAGAT
GACGAGTGGGAAGAGGGTGCCAATGAAATTGGCATTGTTGGCAATGAGAT
CGATGAGCTGGGCCCCACAGCCAGGGATATTGAAATTCGACGACGAGGCA
CAAACCTTTGGGACACCCAAAAGGAGGACGAGATAGAGGAGTATCTCCGT
AAGAAGTACGCCGATGAGTCAATTGCAAAACGCCACTTTGGAGATGGCGG
TGAAGAGATGTCAGACGAAATTACCCAACAAACTCTATTGCCCGGCATCA
AGGATCCCAATTTGTGGATGGTGAAATGTCGTATAGGCGAGGAGAAGGCC
ACAGCGCTTCTTCTAATGCGAAAGTACTTAACCTACCTGAACACAGACGA
TCCATTGCAAATCAAATCTATTATTGCACCAGAGGGCGTCAAGGGATACA
TTTACCTGGAGGCCTATAAGCAGACTCATGTTAAAACTTGCATTGATAAC
GTGGGTAATCTTCGGATGGGCAAATGGAAACAGGAAATGGTGCCCATCAA
AGAGATGACGGATGTGCTAAAGGTGGTCA

BO08717.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7626-PA 3237 Spt5-RA 1..913 17..929 4515 99.7 Plus
CG7626-PB 2889 Spt5-RB 1..913 17..929 4515 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:15:29
Subject Length Description Subject Range Query Range Score Percent Strand
Spt5-RA 3460 CG7626-RA 117..1029 17..929 4535 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:15:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19437972..19438345 17..390 1870 100 Plus
2R 25286936 2R 19438785..19439062 652..929 1375 99.6 Plus
2R 25286936 2R 19438590..19438728 514..652 680 99.3 Plus
2R 25286936 2R 19438407..19438531 389..513 625 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:15:25 has no hits.

BO08717.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:53:01 Download gff for BO08717.5prime
Subject Subject Range Query Range Percent Splice Strand
Spt5-PB 1..912 17..928 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:49:57 Download gff for BO08717.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7626-PB 1..912 17..928 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:53:24 Download gff for BO08717.5prime
Subject Subject Range Query Range Percent Splice Strand
Spt5-RA 112..1028 9..928 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:49:23 Download gff for BO08717.5prime
Subject Subject Range Query Range Percent Splice Strand
Spt5-RA 112..1028 9..928 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:49:23 Download gff for BO08717.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19437967..19438343 9..388 98 -> Plus
2R 19438407..19438531 389..513 100 -> Plus
2R 19438590..19438727 514..651 99 -> Plus
2R 19438785..19439061 652..928 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:53:24 Download gff for BO08717.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15325472..15325848 9..388 98 -> Plus
arm_2R 15325912..15326036 389..513 100 -> Plus
arm_2R 15326095..15326232 514..651 99 -> Plus
arm_2R 15326290..15326566 652..928 99   Plus

BO08717.complete Sequence

2920 bp assembled on 2008-08-15

GenBank Submission: FJ631270

> BO08717.complete
GAAGTTATCAGTCGACATGTCGGACTCGGAAGTCAGTAATATGTCGGATA
GTGGCTCCGAAGATGGATCCATTTCCAACAAGTCGCAACGGAGTGCCCGC
TCCAAGTCAAGATCGCGTTCCAGGTCCGGTTCCAGGGGATCTCGCTCCGT
TTCCAGGTCCAGATCACGCTCTCAATCGGGCCACTCTAGATCTGGCTCGG
AATCTCCACAGAGACGAGATAATCGCGGCAAGAGCGATGAATCCGGCGAA
GAGGAGGAGGAGCCACCAGGTGAGGACATCGATTCCGAGGAGTACGATGA
GGAGGAGAACGACGATCACCCAAGGAAGAAGAAAAAGAAGGAGCGTTTTG
GGGGCTTCATCATTGACGAGGCCGAAGTGGACGATGAAGTCGATGAAGAT
GACGAGTGGGAAGAGGGTGCCAATGAAATTGGCATTGTTGGCAATGAGAT
CGATGAGCTGGGCCCCACAGCCAGGGATATTGAAATTCGACGACGAGGCA
CAAACCTTTGGGACACCCAAAAGGAGGACGAGATAGAGGAGTATCTCCGT
AAGAAGTACGCCGATGAGTCAATTGCAAAACGCCACTTTGGAGATGGCGG
TGAAGAGATGTCAGACGAAATTACCCAACAAACTCTATTGCCCGGCATCA
AGGATCCCAATTTGTGGATGGTGAAATGTCGTATAGGCGAGGAGAAGGCC
ACAGCGCTTCTTCTAATGCGAAAGTACTTAACCTACCTGAACACAGACGA
TCCATTGCAAATCAAATCTATTATTGCACCAGAGGGCGTCAAGGGATACA
TTTACCTGGAGGCCTATAAGCAGACTCATGTTAAAACTTGCATTGATAAC
GTGGGTAATCTTCGGATGGGCAAATGGAAACAGGAAATGGTGCCCATCAA
GGAGATGACGGATGTGCTAAAGGTGGTCAAGGAGCAGGTTGGCCTTAAAG
TGAAACAATGGGTGCGCTTGAAGCGCGGTCTCTACAAGGACGACATCGCA
CAGGTGGACTACGTGGATCTGGCCCAGAACCAAGTACATCTTAAGTTGCT
TCCTCGCATTGACTACACACGCATGCGAGGAGCCTTGCGAACAACAGCAA
CGGAGAGTGACGATAGCAAGCGCAAGAAGAAACGCCGCCCAGCAGCTAAA
CCTTTTGATCCAGAGGCCGTAAGGGCAATTGGAGGTGAAGTACACTCAGA
TGGTGATTTCCTGCTCTTCGAGGGAAACCGGTATTCGCGAAAGGGATTCC
TGTATAAAAACTTTACCATGTCGGCCATTCTCTCGGACGGTGTAAAGCCC
ACTTTAGCCGAGCTAGAACGCTTTGAAGAATCTCCGGAAGAGGTAAACTT
GGAAATTATGGGCACCGTGAAGGATGATCCCACTATGGCTCACTCATTCT
CAATGGGCGACAATGTGGAAGTCTGCGTGGGTGATTTGGAAAACTTACAG
GCCAAGATTGTGGCTATTGACGGCACCATGAATGGCAAGTGCATCGAGTG
CAAGCCAACTGCATTGCACAAGCGAAAGGAGAACCGTCATACGGTGGCTC
TGGATGCAGATCAAAACCAAATCCGCCGGCGCGATGTAGTCAAGGTGATG
GAGGGACCCCATGCAGGACGTTCCGGCGAGATCAAGCATTTGTATCGCAG
TCTGGCCTTTCTCCATTGCCGCATGTACACGGAGAACGGTGGAATATTTG
TGTGCAAGACTAGGCATTTGCAGTTGGCTGGAGGCAGCAAGACTACCGTT
AGTAATGCCGGCATTGTGGGCGGCCTAGGATTTATGTCGCCGCGCATTCA
ATCGCCCATGCATCCATCCGGTGGTCGTGGAGCTCGTGGTGGCGCCCGTG
GTGGACGAGGTGGTTTCCGAGTGACCCGTGACCGTGAGATCTTGGGTAAA
ACCATTAAGATTAGTGGAGGACCTTATAAGGGCGCCGTGGGAATTGTGAA
GGATGCCACCGAGAGCACGGCTCGTGTGGAACTGCATACCTCATGCCAGA
CGATTTCGGTAGACCGGAATCACATTGCCATTGTGGGAGTTACCGGTAAA
GAGGGCAGTGTCTCCACATATGGACGCACCCCAGCTCGCACTCCCGGCTA
CGGTGCCCAGACTCCCAGTTATACCGCTGCCGGATCGAAAACTCCGTTGG
TGGGAAGCCAGACGCCCAACTGGGATACGGATACTCGTACTCCTTATGGT
ACAATGACACCATCGCACGATGGCAGCATGACACCACGTCATGGCGCTTG
GGATCCCACGGCAAACACAACGCCGGCCAGGAACAACGATTTCGATTACT
CCCTTGAGGAGCCCAGTCCCAGCCCTGGATACAATCCAAGTACCCCTGGC
TATCAAATGACTTCCCAGTTTGCCCCGCAAACTCCTGGCACTCTGTATGG
ATCGGACAGAAGCTACAGTCCATTCAATCCCAGCCCCAGTCCTGCTCCGT
CGCCGTATCCCGTTGGTTACATGAACACTCCGTCGCCATCGACTTATTCA
CCGAATACTCCTGGTGGCATACCGCAGTCGCCGTACAATCCGCAGACCCC
TGGAGCCAGTCTGGACTCGTCGATGGGCGACTGGTGTACCACAGACATTG
AAGTTCGGATTCACACGCACGACGACACCGATCTCGTTGGGCAAACGGGC
ATCATTCGCACCGTTTCGAACGGCGTCTGCTCCGTATTCCTGCGCCAGGA
GGATCGCAGTGTGTCCATCGTTAGTGAGCACTTGGCGCCAGTGCTACCAT
GCAATGGCGACGAATTCAAGATCATCTACGGCGATGACCGCGAGTCCGTG
GGCAGAGTGCTGTCCAAGGATGGCGATGTGTTCGTCTGCAGGATTAACGA
GGAAATCAAGCTGCTACCGATTAACTTCCTCTGCAAGATGAAGTCCATCG
ACGCAAGCTTTCTAGACCAT

BO08717.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:11:20
Subject Length Description Subject Range Query Range Score Percent Strand
Spt5-RA 3237 CG7626-PA 1..1465 17..1481 7310 99.9 Plus
Spt5-RA 3237 CG7626-PA 1809..3234 1477..2902 7130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:21
Subject Length Description Subject Range Query Range Score Percent Strand
Spt5-RA 3460 CG7626-RA 117..1581 17..1481 7310 99.9 Plus
Spt5-RA 3460 CG7626-RA 1925..3350 1477..2902 7130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19440444..19441170 1616..2342 3635 100 Plus
2R 25286936 2R 19441226..19441788 2340..2902 2815 100 Plus
2R 25286936 2R 19438785..19439236 652..1103 2260 100 Plus
2R 25286936 2R 19437972..19438345 17..390 1870 100 Plus
2R 25286936 2R 19439424..19439592 1172..1340 845 100 Plus
2R 25286936 2R 19439651..19439793 1339..1481 715 100 Plus
2R 25286936 2R 19440251..19440390 1477..1616 700 100 Plus
2R 25286936 2R 19438590..19438728 514..652 680 99.3 Plus
2R 25286936 2R 19438407..19438531 389..513 625 100 Plus
2R 25286936 2R 19439297..19439369 1102..1174 365 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:11:19 has no hits.

BO08717.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:35:26 Download gff for BO08717.complete
Subject Subject Range Query Range Percent Splice Strand
Spt5-RB 111..3010 9..2914 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:41:37 Download gff for BO08717.complete
Subject Subject Range Query Range Percent Splice Strand
Spt5-RA 117..1579 17..1479 99 -> Plus
Spt5-RA 1928..3350 1480..2904 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:12:39 Download gff for BO08717.complete
Subject Subject Range Query Range Percent Splice Strand
Spt5-RB 116..3001 17..2904 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:57 Download gff for BO08717.complete
Subject Subject Range Query Range Percent Splice Strand
Spt5-RA 117..1579 17..1479 99 -> Plus
Spt5-RA 1928..3350 1480..2904 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:57 Download gff for BO08717.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19437972..19438343 17..388 100 -> Plus
2R 19438407..19438531 389..513 100 -> Plus
2R 19438590..19438727 514..651 99 -> Plus
2R 19438785..19439235 652..1102 100 -> Plus
2R 19439298..19439368 1103..1173 100 -> Plus
2R 19439426..19439592 1174..1340 100 -> Plus
2R 19439653..19439791 1341..1479 100 -> Plus
2R 19440254..19440389 1480..1615 100 -> Plus
2R 19440444..19441167 1616..2339 100 -> Plus
2R 19441226..19441788 2340..2904 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:41:37 Download gff for BO08717.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15326095..15326232 514..651 99 -> Plus
arm_2R 15325477..15325848 17..388 100 -> Plus
arm_2R 15325912..15326036 389..513 100 -> Plus
arm_2R 15326290..15326740 652..1102 100 -> Plus
arm_2R 15326803..15326873 1103..1173 100 -> Plus
arm_2R 15326931..15327097 1174..1340 100 -> Plus
arm_2R 15327158..15327296 1341..1479 100 -> Plus
arm_2R 15327759..15327894 1480..1615 100 -> Plus
arm_2R 15327949..15328672 1616..2339 100 -> Plus
arm_2R 15328731..15329293 2340..2904 99   Plus

BO08717.pep Sequence

Translation from 16 to 2920

> BO08717.pep
MSDSEVSNMSDSGSEDGSISNKSQRSARSKSRSRSRSGSRGSRSVSRSRS
RSQSGHSRSGSESPQRRDNRGKSDESGEEEEEPPGEDIDSEEYDEEENDD
HPRKKKKKERFGGFIIDEAEVDDEVDEDDEWEEGANEIGIVGNEIDELGP
TARDIEIRRRGTNLWDTQKEDEIEEYLRKKYADESIAKRHFGDGGEEMSD
EITQQTLLPGIKDPNLWMVKCRIGEEKATALLLMRKYLTYLNTDDPLQIK
SIIAPEGVKGYIYLEAYKQTHVKTCIDNVGNLRMGKWKQEMVPIKEMTDV
LKVVKEQVGLKVKQWVRLKRGLYKDDIAQVDYVDLAQNQVHLKLLPRIDY
TRMRGALRTTATESDDSKRKKKRRPAAKPFDPEAVRAIGGEVHSDGDFLL
FEGNRYSRKGFLYKNFTMSAILSDGVKPTLAELERFEESPEEVNLEIMGT
VKDDPTMAHSFSMGDNVEVCVGDLENLQAKIVAIDGTMNGKCIECKPTAL
HKRKENRHTVALDADQNQIRRRDVVKVMEGPHAGRSGEIKHLYRSLAFLH
CRMYTENGGIFVCKTRHLQLAGGSKTTVSNAGIVGGLGFMSPRIQSPMHP
SGGRGARGGARGGRGGFRVTRDREILGKTIKISGGPYKGAVGIVKDATES
TARVELHTSCQTISVDRNHIAIVGVTGKEGSVSTYGRTPARTPGYGAQTP
SYTAAGSKTPLVGSQTPNWDTDTRTPYGTMTPSHDGSMTPRHGAWDPTAN
TTPARNNDFDYSLEEPSPSPGYNPSTPGYQMTSQFAPQTPGTLYGSDRSY
SPFNPSPSPAPSPYPVGYMNTPSPSTYSPNTPGGIPQSPYNPQTPGASLD
SSMGDWCTTDIEVRIHTHDDTDLVGQTGIIRTVSNGVCSVFLRQEDRSVS
IVSEHLAPVLPCNGDEFKIIYGDDRESVGRVLSKDGDVFVCRINEEIKLL
PINFLCKMKSIDASFLDH

BO08717.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:28:51
Subject Length Description Subject Range Query Range Score Percent Strand
Spt5-PA 1078 CG7626-PA 536..1078 426..962 2563 90.1 Plus
Spt5-PA 1078 CG7626-PA 1..533 1..539 2527 91.9 Plus