Clone Sequence Records
BO08722.3prime Sequence
891 bp (775 high quality bases) assembled on 2006-01-09
> BO08722.3prime
ATGGTCTAGAAAGCTTGCGTTGGACTTGGTCAGCTCAGTGCGGTTGGCGG
CCACTTCGGCCAGAATGAGTAGATCTGAGGTAGAGGAGGTCACGTCGAAG
GCCGCCTGCGAGGAGAGCGAGGAGGATGACGACGAGGAGTTCGAAGAGAG
CGGTGGCGAGGCCGACGACGAGGTTACAGGGGCATTCACCGCCTTGGGAG
CACCGCTCTGGTTAAAGTAGTAGCTGCCATTGATGGTCAGGGGCAGAATT
GAGGCCACCTCCTGTTCAATGGCACTAACATCGCGCCGGGTGATACTTTC
CTTGCGCGCCTTTCGTCGCTGGCTTCCCACAGCCTGCAGTTGCTGCTGCT
TGATCCTCACGTGTTGCTCGCTAGATAATGGGACAGCACCTTTCGCCGCA
GCATCTGCTGCTGCCACATTCGAAGTTGCTGATGCACCACTTGTGCTGTT
CGAATTCCTCTGTTTCTTGGTGCCGCTAAACTTCTTCTTCTTTTTGGTGC
TACGTTTGCGCTGCAGGTAAGCGTCCAAGCTGAGGGCTGGCAGCTCTTTG
ATTTTCTCCTCGAGATCAAAGAAACCACTGCTGCTTGACTCGGAAACGCT
TCTTATATGTTTTTGCATGGAATCCGGACTGCTACCCTGACGTTCCGGTG
GCGAAACGGGCGGTGTATTGGGTCCCGCATCCAAGGGGATGTCCACAAAG
TTTCCACCCATGTTACCTGCCGGCGGCAAGCGAGCTTTGCTCTTCTTAGC
TATGGCCGCCAATTGACCGGAATTGACCAATTCCTGGTAAATCTTGCCCT
TGCAGGAGCGTGATGACTTGACCTTCTTGTTTGGCGAGCTACCACTGGCC
GCCTCCTCCTCGCTGGAGTTGCTCGAGTTGTTGTCCTGCCA
BO08722.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:28:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1414-PB | 2310 | bbx-RB | 1437..2307 | 889..19 | 4355 | 100 | Minus |
| CG1414-PC | 2310 | bbx-RC | 1437..2307 | 889..19 | 4355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:33:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bbx-RE | 3616 | CG1414-RE | 1834..2704 | 889..19 | 4355 | 100 | Minus |
| bbx-RD | 3334 | CG1414-RD | 1552..2422 | 889..19 | 4355 | 100 | Minus |
| bbx-RC | 3363 | CG1414-RC | 1581..2451 | 889..19 | 4355 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:33:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21371363..21372233 | 889..19 | 4355 | 100 | Minus |
Blast to na_te.dros performed 2015-02-02 18:33:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6938 | 508..318 | 153 | 55.7 | Minus |
| TART-A | 13424 | TART-A 13424bp | 11056..11127 | 477..405 | 119 | 64.4 | Minus |
BO08722.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:53:07 Download gff for
BO08722.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1414-PB | 1436..2310 | 18..890 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:50:08 Download gff for
BO08722.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1414-PC | 1436..2310 | 18..890 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:41:42 Download gff for
BO08722.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bbx-RC | 1583..2458 | 13..890 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:16:17 Download gff for
BO08722.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bbx-RC | 1580..2455 | 13..890 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:16:17 Download gff for
BO08722.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21371362..21372237 | 13..890 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:41:42 Download gff for
BO08722.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21242389..21243264 | 13..890 | 99 | | Minus |
BO08722.5prime Sequence
940 bp (777 high quality bases) assembled on 2006-01-09
> BO08722.5prime
GAAGTTATCAGTCGACATGATCAACGGCCTGAGCGTTGGCGGTGGTCAGC
AGGTGGCGCAGGTGACGCCAACAGGTGCTGCAATTAAATTGCACTTTGCC
TACAACAACAACAGCAACAACAGTAGCAGCAGCAACATCAGCAACAGCAA
CTACAGTGGCCTTAAAACATCGGAGACGAAAATGAGGAACAACAAGAACT
ACACAGGCAGAGCGCTGAAAATAGTTGAGAAGATACCGGGAGCAAGTGGA
GTAATCGCCACAACGAGCGGCAACCAAGGAGCAAGAAGCCTTGAGGGATA
TTCTCCGGCAGCGGCATCTTACGTTTCGGGCTTGTCCAGGGACTTTTTGA
TATCCAGAGAACTTTCCCAAAGATCAGGAGAATTCCTGACAGCTGCTGCA
AAGATGGTATCCCAAATGGGAGCAAGCGAACTCCGCTGGCTCCCCATATC
CAGGACCAAAGACAAACCATCGAGCGCAGGAGAAGCAGAAGCTAAAACAT
TAGTCAGAGAAGGTGAATCACAAGGATCGCCTGGTAAAGTTGCCAAAAGT
GCCTTAGGTGACCCCCAGCCGCAGCGCACCGAAGACCAAGAAAATGCCTT
TCGGCGCATCGAGGATGTGCACAACTATGCCAAGTTGCAGGACTGCAGCA
GCGACACTGACGACGAGGACGACGAAGAGGAAGATCTCGATGAAGAGGAG
GATGATGAGGAGGAGGCGGAGATCCAAGTGCAGTTGCCTGTGCAGCAGGA
GGTCACGCGCATTCGTCGCGAGGCCGCCGAAGAGCATGTGGACGTGGACG
TGGTCACAGTGCCGCAGCAGGAGCAGGATCAGTATAGCCATCAAGTAGAG
CCGCGACAGCTTCAGCANGATGAGACAGCGGATAACACACGGCCGGAGCA
TCATGCCCGCCGACCCATGAATGCCTTCCTCATATTCTGC
BO08722.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:28:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1414-PB | 2310 | bbx-RB | 1..924 | 17..940 | 4601 | 99.8 | Plus |
| CG1414-PC | 2310 | bbx-RC | 1..924 | 17..940 | 4601 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:57:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bbx-RE | 3616 | CG1414-RE | 396..1321 | 15..940 | 4619 | 99.9 | Plus |
| bbx-RD | 3334 | CG1414-RD | 114..1039 | 15..940 | 4619 | 99.9 | Plus |
| bbx-RC | 3363 | CG1414-RC | 143..1068 | 15..940 | 4619 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:57:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21369747..21370672 | 15..940 | 4619 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:57:50 has no hits.
BO08722.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:53:08 Download gff for
BO08722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1414-PB | 1..924 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:50:09 Download gff for
BO08722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1414-PC | 1..924 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:51:53 Download gff for
BO08722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bbx-RC | 143..1071 | 10..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:53:57 Download gff for
BO08722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bbx-RC | 140..1068 | 10..940 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:53:57 Download gff for
BO08722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21369744..21370672 | 10..940 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:51:53 Download gff for
BO08722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21240771..21241699 | 10..940 | 99 | | Plus |
BO08722.complete Sequence
2341 bp assembled on 2007-03-23
GenBank Submission: FJ631271
> BO08722.complete
GAAGTTATCAGTCGACATGATCAACGGCCTGAGCGTTGGCGGTGGTCAGC
AGGTGGCGCAGGTGACGCCAACAGGTGCTGCAATTAAATTGCACTTTGCC
TACAACAACAACAGCAACAACAGTAGCAGCAGCAACATCAGCAACAGCAA
CTACAGTGGCCTTAAAACATCGGAGACGAAAATGAGGAACAACAAGAACT
ACACAGGCAGAGCGCTGAAAATAGTTGAGAAGATACCGGGAGCAAGTGGA
GTAATCGCCACAACGAGCGGCAACCAAGGAGCAAGAAGCCTTGAGGGATA
TTCTCCGGCAGCGGCATCTTACGTTTCGGGCTTGTCCAGGGACTTTTTGA
TATCCAGAGAACTTTCCCAAAGATCAGGAGAATTCCTGACAGCTGCTGCA
AAGATGGTATCCCAAATGGGAGCAAGCGAACTCCGCTGGCTCCCCATATC
CAGGACCAAAGACAAACCATCGAGCGCAGGAGAAGCAGAAGCTAAAACAT
TAGTCAGAGAAGGTGAATCACAAGGATCGCCTGGTAAAGTTGCCAAAAGT
GCCTTAGGTGACCCCCAGCCGCAGCGCACCGAAGACCAAGAAAATGCCTT
TCGGCGCATCGAGGATGTGCACAACTATGCCAAGTTGCAGGACTGCAGCA
GCGACACTGACGACGAGGACGACGAAGAGGAAGATCTCGATGAAGAGGAG
GATGATGAGGAGGAGGCGGAGATCCAAGTGCAGTTGCCTGTGCAGCAGGA
GGTCACGCGCATTCGTCGCGAGGCCGCCGAAGAGCATGTGGACGTGGACG
TGGTCACAGTGCCGCAGCAGGAGCAGGATCAGTATAGCCATCAAGTAGAG
CCGCGACAGCTTCAGCAGGATGAGACAGCGGATAACACACGGCCGGAGCA
TCATGCCCGCCGACCCATGAATGCCTTCCTCATATTCTGCAAGAGACATC
GCGGTATCGTCAAGGAGCGTTACAAAACTTTGGAGAACCGTGCCATTACA
AAGATACTTGGCGACTGGTGGGCCGCTCTCGACGAGCAGGAGAAACACTG
CTTCACGGATCTGGCACAGCAGAACAAGGACGCCTTCTTCAATGCTAATC
CAAACTTCAAGTGGTACAAACTGCCAGCTCCGCCGCTGCGAACGCTAGCT
ACCCGTCCCAGCAACGCGTCTGCTGGCTTGCTCATACCCAGTGAAGATCA
GCCACAGCAGCAGGTGCCGACTTCACTGCAAGTGCAGTGGGCAGAGCGAG
GGGAGATGCCGCGTGCTATGCTGCGCCCCAACTACTTTAAACTGGCAGAC
GAAACGCAGATGGGCGAGCTAAGCTCCCTACTGCAAGTTCAAGTACAAGA
AAAGGACTTCGCCCTACAGCAGGTGCTCAGCGAGACCAGCCAGTTTCTAT
CTGCCCATATGCCAGCTGGCAATACAAATGGGAATGGCAATAAGCGCTCC
TTGCAGGACAACAACTCGAGCAACTCCAGCGAGGAGGAGGCGGCCAGTGG
TAGCTCGCCAAACAAGAAGGTCAAGTCATCACGCTCCTGCAAGGGCAAGA
TTTACCAGGAATTGGTCAATTCCGGTCAATTGGCGGCCATAGCTAAGAAG
AGCAAAGCTCGCTTGCCGCCGGCAGGTAACATGGGTGGAAACTTTGTGGA
CATCCCCTTGGATGCGGGACCCAATACACCGCCCGTTTCGCCACCGGAAC
GTCAGGGTAGCAGTCCGGATTCCATGCAAAAACATATAAGAAGCGTTTCC
GAGTCAAGCAGCAGTGGTTTCTTTGATCTCGAGGAGAAAATCAAAGAGCT
GCCAGCCCTCAGCTTGGACGCTTACCTGCAGCGCAAACGTAGCACCAAAA
AGAAGAAGAAGTTTAGCGGCACCAAGAAACAGAGGAATTCGAACAGCACA
AGTGGTGCATCAGCAACTTCGAATGTGGCAGCAGCAGATGCTGCGGCGAA
AGGTGCTGTCCCATTATCTAGCGAGCAACACGTGAGGATCAAGCAGCAGC
AACTGCAGGCTGTGGGAAGCCAGCGACGAAAGGCGCGCAAGGAAAGTATC
ACCCGGCGCGATGTTAGTGCCATTGAACAGGAGGTGGCCTCAATTCTGCC
CCTGACCATCAATGGCAGCTACTACTTTAACCAGAGCGGTGCTCCCAAGG
CGGTGAATGCCCCTGTAACCTCGTCGTCGGCCTCGCCACCGCTCTCTTCG
AACTCCTCGTCGTCATCCTCCTCGCTCTCCTCGCAGGCGGCCTTCGACGT
GACCTCCTCTACCTCAGATCTACTCATTCTGGCCGAAGTGGCCGCCAACC
GCACTGAGCTGACCAAGTCCAACGCAAGCTTTCTAGACCAT
BO08722.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:03:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bbx-RE | 2310 | CG1414-PE | 1..2307 | 17..2323 | 11535 | 100 | Plus |
| bbx-RD | 2310 | CG1414-PD | 1..2307 | 17..2323 | 11535 | 100 | Plus |
| bbx-RC | 2310 | CG1414-PC | 1..2307 | 17..2323 | 11535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:03:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bbx-RE | 3616 | CG1414-RE | 396..2704 | 15..2323 | 11545 | 100 | Plus |
| bbx-RD | 3334 | CG1414-RD | 114..2422 | 15..2323 | 11545 | 100 | Plus |
| bbx-RC | 3363 | CG1414-RC | 143..2451 | 15..2323 | 11545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:03:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21370981..21372233 | 1071..2323 | 6265 | 100 | Plus |
| X | 23542271 | X | 21369747..21370722 | 15..990 | 4880 | 100 | Plus |
| X | 23542271 | X | 21370792..21370874 | 990..1072 | 415 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 22:03:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6938 | 1834..2024 | 153 | 55.7 | Plus |
| TART-A | 13424 | TART-A 13424bp | 11056..11127 | 1865..1937 | 119 | 64.4 | Plus |
BO08722.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:16 Download gff for
BO08722.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bbx-RC | 1..2310 | 17..2324 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:29:23 Download gff for
BO08722.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bbx-RC | 143..2458 | 10..2329 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:45:15 Download gff for
BO08722.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bbx-RC | 148..2454 | 17..2325 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:16 Download gff for
BO08722.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bbx-RC | 143..2458 | 10..2329 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:49:55 Download gff for
BO08722.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bbx-RC | 145..2451 | 17..2325 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:49:55 Download gff for
BO08722.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21369749..21370722 | 17..990 | 100 | -> | Plus |
| X | 21370793..21370874 | 991..1072 | 100 | -> | Plus |
| X | 21370983..21372233 | 1073..2325 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:45:15 Download gff for
BO08722.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21240776..21241749 | 17..990 | 100 | -> | Plus |
| arm_X | 21241820..21241901 | 991..1072 | 100 | -> | Plus |
| arm_X | 21242010..21243260 | 1073..2325 | 99 | | Plus |
BO08722.pep Sequence
Translation from 16 to 2341
> BO08722.pep
MINGLSVGGGQQVAQVTPTGAAIKLHFAYNNNSNNSSSSNISNSNYSGLK
TSETKMRNNKNYTGRALKIVEKIPGASGVIATTSGNQGARSLEGYSPAAA
SYVSGLSRDFLISRELSQRSGEFLTAAAKMVSQMGASELRWLPISRTKDK
PSSAGEAEAKTLVREGESQGSPGKVAKSALGDPQPQRTEDQENAFRRIED
VHNYAKLQDCSSDTDDEDDEEEDLDEEEDDEEEAEIQVQLPVQQEVTRIR
REAAEEHVDVDVVTVPQQEQDQYSHQVEPRQLQQDETADNTRPEHHARRP
MNAFLIFCKRHRGIVKERYKTLENRAITKILGDWWAALDEQEKHCFTDLA
QQNKDAFFNANPNFKWYKLPAPPLRTLATRPSNASAGLLIPSEDQPQQQV
PTSLQVQWAERGEMPRAMLRPNYFKLADETQMGELSSLLQVQVQEKDFAL
QQVLSETSQFLSAHMPAGNTNGNGNKRSLQDNNSSNSSEEEAASGSSPNK
KVKSSRSCKGKIYQELVNSGQLAAIAKKSKARLPPAGNMGGNFVDIPLDA
GPNTPPVSPPERQGSSPDSMQKHIRSVSESSSSGFFDLEEKIKELPALSL
DAYLQRKRSTKKKKKFSGTKKQRNSNSTSGASATSNVAAADAAAKGAVPL
SSEQHVRIKQQQLQAVGSQRRKARKESITRRDVSAIEQEVASILPLTING
SYYFNQSGAPKAVNAPVTSSSASPPLSSNSSSSSSSLSSQAAFDVTSSTS
DLLILAEVAANRTELTKSNASFLDH
BO08722.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:36:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bbx-PE | 769 | CG1414-PE | 1..769 | 1..769 | 3881 | 100 | Plus |
| bbx-PD | 769 | CG1414-PD | 1..769 | 1..769 | 3881 | 100 | Plus |
| bbx-PC | 769 | CG1414-PC | 1..769 | 1..769 | 3881 | 100 | Plus |
| bbx-PB | 769 | CG1414-PB | 1..769 | 1..769 | 3881 | 100 | Plus |
| cic-PH | 1275 | CG43122-PH | 240..428 | 217..387 | 210 | 27 | Plus |
