Clone BO08734 Report

Search the DGRC for BO08734

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:87
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptOpbp-RA
Protein status:BO08734.pep: Imported from assembly
Sequenced Size:1720

Clone Sequence Records

BO08734.3prime Sequence

799 bp (772 high quality bases) assembled on 2006-01-09

> BO08734.3prime
ATGGTCTAGAAAGCTTGCCTTAAGCCAATCTGTAATAACTTCCTCGCTGT
GGAAGTTATCCACGTCAAACACAACGCACTCTTCGTAGGTGGGTACGGTG
CCCACGATGTCTACATCGTTTACCACAGCGTTTATGTAAGCGGCATCTGC
CTCGGCTGCCGCTATCAACACCGCAGTCTCGGAATCATCGGTCTCAGCGA
CGTGTGCAGCATCAGTTGAGGTGGCGGGATTCTCCTGCTCCTCCACCAAA
CCGTGAGCCGACTTCATGTGCAGGCGCAGGGCGAAGAGACGTGCGTACTC
AGCTCCACAAGTATTACAATAGAACTTCCCAGCTGCCTGGCTCTTCGAGG
TGGCCGCACTCTTAATGTTCGGCGTACCAGAGCCGACACTTCCTTTGCTG
CTGATCTCCTTATGGGTCTGCATGTGATTCTTGACGGCGTACATCGAAGA
AAATGGGCGATTGCACACGGCACACCGGTAAGGCTTGGTGTGGGTGTTTT
TGTGGGCGTACAGCTGCACGGAGGTCCGAAAAGTCTTGGGGCACGCATCG
CATGAAAACTGTCGTTCGGAGCTGTGGATGCGCAGGTGGTGGGAGTACAC
TTGGTGCGATTTAAAGCGCTTGTTGCACACCGTGCACACATACGGCCGAA
TGTTGGTGTGGGTACGCAGATGAAGGGTCAGGGAATATGACACCCGAAAT
GTCTTGCCGCAGACCTCGCAGGCGTAAGGCTTTTCTCCGGTGTGGACCCG
TTCGTGCTTGACTTTTTCAAAGGGGCGGGTGAACACCCTCTCGCAGTAC

BO08734.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG30443-PA 1689 CG30443-RA 906..1686 799..19 3905 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:34:46
Subject Length Description Subject Range Query Range Score Percent Strand
Opbp-RA 1829 CG30443-RA 1004..1784 799..19 3905 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:34:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6654563..6655110 617..70 2740 100 Minus
2R 25286936 2R 6654327..6654509 799..617 915 100 Minus
2R 25286936 2R 6655171..6655222 70..19 260 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:34:44 has no hits.

BO08734.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:53:20 Download gff for BO08734.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30443-PA 906..1689 18..799 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:50:27 Download gff for BO08734.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30443-PA 906..1689 18..799 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:53:54 Download gff for BO08734.3prime
Subject Subject Range Query Range Percent Splice Strand
Opbp-RA 1004..1788 13..799 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:55:53 Download gff for BO08734.3prime
Subject Subject Range Query Range Percent Splice Strand
Opbp-RA 1004..1788 13..799 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:55:53 Download gff for BO08734.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6654327..6654509 617..799 100 -> Minus
2R 6654564..6655110 70..616 100 -> Minus
2R 6655172..6655226 13..69 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:53:54 Download gff for BO08734.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2541832..2542014 617..799 100 -> Minus
arm_2R 2542069..2542615 70..616 100 -> Minus
arm_2R 2542677..2542731 13..69 94   Minus

BO08734.5prime Sequence

894 bp (852 high quality bases) assembled on 2006-01-09

> BO08734.5prime
GAAGTTATCAGTCGACATGTCATCGTCCAACCAGGCCGAGGAGACTACCC
CGAACCTCCACGTGGAGGATGGAGACTTATCCGGAGGCGCCTTGCAGCAG
GAATTCCTCTACTGCGAGAGCTGCGGCAATGTATACGAGGACACCGAGTC
TTACGACAGGGCCCACGGTCCGCAGGCCGGCTGCTGCACCGGCGCTAGCG
GGGAATTGGATTTCATCGAGGAGGTCGCCGAAGATTGCATTTCGGAAGAG
GTCGGGGAAGAGGACATTGTCTACGCAGACGTACCCCTCTGGGAGCTGGT
GGAGGAAGTTCCGGCCAACGTGAAGGCGGAGAAGGACCAAAACGAGCCTA
GCAATTCCGATCGCTACTTCTGTTACGACTGCCACAGCATTTTCGAGAAC
CGAAATAAAGCTGAGGAGCACATATGTCCGCGGGCGGAATCCGGCGGGTC
CAGCCAACAAGATGGCGATGCGAAAGCACCCGTCCGGCGAAAGTTGGCCA
GTGTCAGTGCAAGGACGGGTCCGAGAGACGCATCATCCGTTATTAGCTGC
GGAATCTGCAACACCGTTTTTAGCTCGGAGAAGTTTCTCAAATTCCACAT
GCGCATTCATGAGAATCGAGCTCCCAAGAGCATTCAGGACGCCCTTCCTA
TAGGCGCCCATCAGCAGTACAGCGAGCTGGACCAGTTCTACTGCGAAATA
TGCAACAAAAGCTTCGATGAAACCCTCCTGACGGTACACAAACAGATGCA
CCAACAGGAATCTAGTGAGATTATGTGCAGCATTTGCAACCGGAAGTTTG
AGAACGAAGTTACCTATCAGATGCACCAAAAAATCCATGAGAAACCGCGC
GACTCCGAGTCCTCCCGTAAATAGCCCAGCGTACTAGTCTCGAT

BO08734.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG30443-PA 1689 CG30443-RA 1..856 17..872 4280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:59:21
Subject Length Description Subject Range Query Range Score Percent Strand
Opbp-RA 1829 CG30443-RA 98..977 16..894 4375 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6653373..6654060 24..711 3440 100 Plus
2R 25286936 2R 6654115..6654300 710..894 880 99.5 Plus
Blast to na_te.dros performed on 2015-02-10 22:59:19 has no hits.

BO08734.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:53:21 Download gff for BO08734.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30443-PA 1..879 17..894 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:50:28 Download gff for BO08734.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30443-PA 1..879 17..894 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:25:59 Download gff for BO08734.5prime
Subject Subject Range Query Range Percent Splice Strand
Opbp-RA 91..977 7..894 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:18:35 Download gff for BO08734.5prime
Subject Subject Range Query Range Percent Splice Strand
Opbp-RA 91..977 7..894 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:18:35 Download gff for BO08734.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6653365..6654060 15..711 99 -> Plus
2R 6654117..6654300 712..894 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:25:59 Download gff for BO08734.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2540870..2541565 15..711 99 -> Plus
arm_2R 2541622..2541805 712..894 99   Plus

BO08734.complete Sequence

1720 bp assembled on 2008-08-14

GenBank Submission: FJ631272

> BO08734.complete
GAAGTTATCAGTCGACATGTCATCGTCCAACCAGGCCGAGGAGACTACCC
CGAACCTCCACGTGGAGGATGGAGACTTATCCGGAGGCGCCTTGCAGCAG
GAATTCCTCTACTGCGAGAGCTGCGGCAATGTATACGAGGACACCGAGTC
TTACGACAGGGCCCACGGTCCGCAGGCCGGCTGCTGCACCGGCGCTAGCG
GGGAATTGGATTTCATCGAGGAGGTCGCCGAAGATTGCATTTCGGAAGAG
GTCGGGGAAGAGGACATTGTCTACGCAGACGTACCCCTCTGGGAGCTGGT
GGAGGAAGTTCCGGCCAACGTGAAGGCGGAGAAGGACCAAAACGAGCCTA
GCAATTCCGATCGCTACTTCTGTTACGACTGCCACAGCATTTTCGAGAAC
CGAAATAAAGCTGAGGAGCACATATGTCCGCGGGCGGAATCCGGCGGGTC
CAGCCAACAAGATGGCGATGCGAAAGCACCCGTCCGGCGAAAGTTGGCCA
GTGTCAGTGCAAGGACGGGTCCGAGAGACGCATCATCCGTTATTAGCTGC
GGAATCTGCAACACCGTTTTTAGCTCGGAGAAGTTTCTCAAATTCCACAT
GCGCATTCATGAGAATCGAGCTCCCAAGAGCATTCAGGACGCCCTTCCTA
TAGGCGCCCATCAGCAGTACAGCGAGCTGGACCAGTTCTACTGCGAAATA
TGCAACAAAAGCTTCGATGAAACCCTCCTGACGGTACACAAACAGATGCA
CCAACAGGAATCTAGTGAGATTATGTGCAGCATTTGCAACCGGAAGTTTG
AGAACGAAGTTACCTATCAGATGCACCAAAAAATCCATGAGAAACCGCGC
GACTCCGAGTCCTCCCGTAAATTAGCCCAGCGTACTAGTCTCGATAAGGA
GAAACCCGGGTTTCCCTGCCAGTACTGCGAGAGGGTGTTCACCCGCCCCT
TTGAAAAAGTCAAGCACGAACGGGTCCACACCGGAGAAAAGCCTTACGCC
TGCGAGGTCTGCGGCAAGACATTTCGGGTGTCATATTCCCTGACCCTTCA
TCTGCGTACCCACACCAACATTCGGCCGTATGTGTGCACGGTGTGCAACA
AGCGCTTTAAATCGCACCAAGTGTACTCCCACCACCTGCGCATCCACAGC
TCCGAACGACAGTTTTCATGCGATGCGTGCCCCAAGACTTTTCGGACCTC
CGTGCAGCTGTACGCCCACAAAAACACCCACACCAAGCCTTACCGGTGTG
CCGTGTGCAATCGCCCATTTTCTTCGATGTACGCCGTCAAGAATCACATG
CAGACCCATAAGGAGATCAGCAGCAAAGGAAGTGTCGGCTCTGGTACGCC
GAACATTAAGAGTGCGGCCACCTCGAAGAGCCAGGCAGCTGGGAAGTTCT
ATTGTAATACTTGTGGAGCTGAGTACGCACGTCTCTTCGCCCTGCGCCTG
CACATGAAGTCGGCTCACGGTTTGGTGGAGGAGCAGGAGAATCCCGCCAC
CTCAACTGATGCTGCACACGTCGCTGAGACCGATGATTCCGAGACTGCGG
TGTTGATAGCGGCAGCCGAGGCAGATGCCGCTTACATAAACGCTGTGGTA
AACGATGTAGACATCGTGGGCACCGTACCCACCTACGAAGAGTGCGTTGT
GTTTGACGTGGATAACTTCCACAGCGAGGAAGTTATTACAGATTGGCTTA
AGGCAAGCTTTCTAGACCAT

BO08734.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:43:19
Subject Length Description Subject Range Query Range Score Percent Strand
Opbp-RA 1689 CG30443-PA 1..1686 17..1702 8430 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:43:21
Subject Length Description Subject Range Query Range Score Percent Strand
Opbp-RA 1829 CG30443-RA 98..1784 16..1702 8435 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:43:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6653373..6654060 24..711 3440 100 Plus
2R 25286936 2R 6654563..6655110 1104..1651 2740 100 Plus
2R 25286936 2R 6654115..6654509 710..1104 1975 100 Plus
2R 25286936 2R 6655171..6655222 1651..1702 260 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:43:17 has no hits.

BO08734.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:14 Download gff for BO08734.complete
Subject Subject Range Query Range Percent Splice Strand
Opbp-RA 75..1771 7..1703 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:34 Download gff for BO08734.complete
Subject Subject Range Query Range Percent Splice Strand
Opbp-RA 99..1784 17..1704 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:43 Download gff for BO08734.complete
Subject Subject Range Query Range Percent Splice Strand
Opbp-RA 83..1768 17..1704 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:23 Download gff for BO08734.complete
Subject Subject Range Query Range Percent Splice Strand
Opbp-RA 99..1784 17..1704 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:51:23 Download gff for BO08734.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6653367..6654060 17..711 99 -> Plus
2R 6654117..6654509 712..1104 100 -> Plus
2R 6654564..6655110 1105..1651 100 -> Plus
2R 6655172..6655222 1652..1704 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:34 Download gff for BO08734.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2540872..2541565 17..711 99 -> Plus
arm_2R 2541622..2542014 712..1104 100 -> Plus
arm_2R 2542069..2542615 1105..1651 100 -> Plus
arm_2R 2542677..2542727 1652..1704 96   Plus

BO08734.pep Sequence

Translation from 16 to 1720

> BO08734.pep
MSSSNQAEETTPNLHVEDGDLSGGALQQEFLYCESCGNVYEDTESYDRAH
GPQAGCCTGASGELDFIEEVAEDCISEEVGEEDIVYADVPLWELVEEVPA
NVKAEKDQNEPSNSDRYFCYDCHSIFENRNKAEEHICPRAESGGSSQQDG
DAKAPVRRKLASVSARTGPRDASSVISCGICNTVFSSEKFLKFHMRIHEN
RAPKSIQDALPIGAHQQYSELDQFYCEICNKSFDETLLTVHKQMHQQESS
EIMCSICNRKFENEVTYQMHQKIHEKPRDSESSRKLAQRTSLDKEKPGFP
CQYCERVFTRPFEKVKHERVHTGEKPYACEVCGKTFRVSYSLTLHLRTHT
NIRPYVCTVCNKRFKSHQVYSHHLRIHSSERQFSCDACPKTFRTSVQLYA
HKNTHTKPYRCAVCNRPFSSMYAVKNHMQTHKEISSKGSVGSGTPNIKSA
ATSKSQAAGKFYCNTCGAEYARLFALRLHMKSAHGLVEEQENPATSTDAA
HVAETDDSETAVLIAAAEADAAYINAVVNDVDIVGTVPTYEECVVFDVDN
FHSEEVITDWLKASFLDH

BO08734.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
Opbp-PA 562 CG30443-PA 1..562 1..562 3013 100 Plus
su(Hw)-PC 941 CG8573-PC 160..545 64..431 391 28.3 Plus
su(Hw)-PB 941 CG8573-PB 160..545 64..431 391 28.3 Plus
su(Hw)-PA 941 CG8573-PA 160..545 64..431 391 28.3 Plus
CG12299-PA 736 CG12299-PA 284..585 178..527 365 27.2 Plus
su(Hw)-PC 941 CG8573-PC 321..620 178..433 308 28.4 Plus
su(Hw)-PB 941 CG8573-PB 321..620 178..433 308 28.4 Plus
su(Hw)-PA 941 CG8573-PA 321..620 178..433 308 28.4 Plus
su(Hw)-PC 941 CG8573-PC 287..518 221..482 268 27 Plus
su(Hw)-PB 941 CG8573-PB 287..518 221..482 268 27 Plus
su(Hw)-PA 941 CG8573-PA 287..518 221..482 268 27 Plus