Clone Sequence Records
BO08746.3prime Sequence
831 bp (753 high quality bases) assembled on 2006-01-09
> BO08746.3prime
ATGGTCTAGAAAGCTTGCATCGTTGTCACTGCCCGATCCGCTGCCGGAAC
CACTGCCACTGCCGCTTCCACTGGCAGACTTGCTGCTGCCGCCGCCGCTC
TTCTGGCTGCCCTCGTTTTCGCTACCACTAGCGCTGCCCCCTTCTCCGCC
GCTCTTGTTGCTGTGGCCGCTCTTGGCGCTGCCGGCGTCCGATTCGCTGT
CGGAGTCGCGCAGTGCCTTGCTGGCCTTGGCCTTGTCCACCTTCTTGCTG
CGACGCGCCTCGAAGTCGGAGCCCTCGTCTTCGTCCGACGAGTAGATCGT
AGATGCCTTAACCTCCGCCTGGCCGGCACCAGAGCCCTTCTTATACCGGT
TCTTGATGGCACTCAGGCTGATGGCGTTCTCATCGTCGCTGCCTTCGTCG
TGCTGGTAAGACGAAGTGCCGCCTCCAATCAGTGGTTCGCCCGCGCCTGG
TTTCTTTTTCTTGGGCAGCGACTTGTGCTGATTGCGCATCGCCTGGCGCA
GCTTGGCCTCCTCCTCCCTGAGCTGCGTTGGCCTATCCGTGGTGGGATCC
TTGCCCACCTGCGTAAGAATCTTAATGCCACTGGTCTTGCTGGATCGATC
GGCCAGCGACATGGTCATCTTCTTGTGCGTAAAGGACTCCGTGGAATGAG
GACGGAAAGTGAGCTTGGTCCTGAAGACCGACTGGCCCTGCAGACCCGTT
CCTTGGCGGACGAACAGATGATTGTGGTCACCTAACAGCGGCTGCCTGTA
GGCGTCGAAGATCTCGTTGCCCAGGTGAAGGGACATGCTGCCGTCGGACC
AACGCACGAATCGCGCATTAAACTCGCGCAA
BO08746.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:29:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1433-PA | 2178 | Atu-RA | 1364..2175 | 830..19 | 4010 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:33:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atu-RA | 2351 | CG1433-RA | 1468..2279 | 830..19 | 4030 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:32:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5615056..5615867 | 830..19 | 4030 | 99.8 | Minus |
Blast to na_te.dros performed 2015-02-08 14:33:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6796..6943 | 188..38 | 154 | 57 | Minus |
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 671..735 | 29..96 | 108 | 64.7 | Plus |
BO08746.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:53:38 Download gff for
BO08746.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atu-PA | 1365..2178 | 15..829 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:50:50 Download gff for
BO08746.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1433-PA | 1365..2178 | 15..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:57:04 Download gff for
BO08746.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atu-RA | 1469..2282 | 15..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:37:24 Download gff for
BO08746.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atu-RA | 1469..2282 | 15..829 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:37:24 Download gff for
BO08746.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5615057..5615870 | 15..829 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:57:04 Download gff for
BO08746.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1440779..1441592 | 15..829 | 99 | | Minus |
BO08746.5prime Sequence
797 bp (757 high quality bases) assembled on 2006-01-09
> BO08746.5prime
GAAGTTATCAGTCGACATGGGCAGCCAAAACTCGGACGACGACAGTGGTT
CATCCGGTTCGAGTCGAAGTGGAAGCCGCAGTGTCACGCCGCAAGGAGGT
AGTGCGCCCGGATCCCAACGCAGTCGCAGGTCGGGTAGTGGCAGCGATCG
TTCCCGATCGGGCTCCAGGTCTTCCCGATCCCGGTCCGGCTCTGGGTCTC
CGCGTAGTGCCAGGTCCGGGTCTGCAGAAAGCCGCCACTCGCAGCTGTCT
GGCTCCGCTCGTAGTAAGAGATCAAGATCTGCTCACAGTCGCAGGTCGGG
ATCTGCGCGTAGCCGTAAATCTGGAACTCCGGAATCTCCACAAAGTCACA
GATCAGGTTCGTTGCAAAGTCGCAAGTCAGGATCGCCTCAGAGTCGTAGA
TCTGGTTCTCCCCAAAGTCGCAAATCGGGATCTACTCACAGCCGCAGATC
CGGTTCGGCCCACAGTCGCAGATCGGGATCCGCTCGGAGTCGCAAATCTG
GTTCGGCACAAAGTGACCGCTCTGAGTCTCGATCGAGGTCTCATAGCGGT
TCACTCAAGGGCAACGAGGAATCGCGGTCTAATTCGCCCAATCTGCAAAT
TGACGTAGAGCGTGCCAATTCCAAGAGCGGCAGTCGCAGCAGAAGTAGGA
GCAGGAGTGGCAGTCGCACTTCCAGATCGCGTTCCAAGACGGGCACGCCG
TCGCCCAATAGAAGTCGTAGTGGCAGCGCATCCGGCTCCGGCAGCGATGT
GGGTGTGCCCAAGAAGAAGGCACGCAAGGCGAGTGGCTCCGATCAAG
BO08746.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:29:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1433-PA | 2178 | Atu-RA | 1..781 | 17..797 | 3905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:59:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atu-RA | 2351 | CG1433-RA | 105..885 | 17..797 | 3905 | 100 | Plus |
| Atu-RA | 2351 | CG1433-RA | 422..554 | 382..514 | 200 | 76.7 | Plus |
| Atu-RA | 2351 | CG1433-RA | 470..602 | 334..466 | 200 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:58:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5613687..5614373 | 111..797 | 3435 | 100 | Plus |
| 3R | 32079331 | 3R | 5613559..5613623 | 47..111 | 325 | 100 | Plus |
| 3R | 32079331 | 3R | 5613910..5614042 | 382..514 | 200 | 76.7 | Plus |
| 3R | 32079331 | 3R | 5613958..5614090 | 334..466 | 200 | 76.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:59:01 has no hits.
BO08746.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:53:39 Download gff for
BO08746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atu-PA | 1..781 | 17..797 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:50:51 Download gff for
BO08746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1433-PA | 1..781 | 17..797 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:25:54 Download gff for
BO08746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atu-RA | 105..885 | 17..797 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:17:50 Download gff for
BO08746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atu-RA | 105..885 | 17..797 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:17:50 Download gff for
BO08746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5613462..5613492 | 17..47 | 100 | -> | Plus |
| 3R | 5613560..5613623 | 48..111 | 100 | -> | Plus |
| 3R | 5613688..5614373 | 112..797 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:25:54 Download gff for
BO08746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1439184..1439214 | 17..47 | 100 | -> | Plus |
| arm_3R | 1439282..1439345 | 48..111 | 100 | -> | Plus |
| arm_3R | 1439410..1440095 | 112..797 | 100 | | Plus |
BO08746.complete Sequence
2209 bp assembled on 2007-10-05
GenBank Submission: FJ631273
> BO08746.complete
GAAGTTATCAGTCGACATGGGCAGCCAAAACTCGGACGACGACAGTGGTT
CATCCGGTTCGAGTCGAAGTGGAAGCCGCAGTGTCACGCCGCAAGGAGGT
AGTGCGCCCGGATCCCAACGCAGTCGCAGGTCGGGTAGTGGCAGCGATCG
TTCCCGATCGGGCTCCAGGTCTTCCCGATCCCGGTCCGGCTCTGGGTCTC
CGCGTAGTGCCAGGTCCGGGTCTGCAGAAAGCCGCCACTCGCAGCTGTCT
GGCTCCGCTCGTAGTAAGAGATCAAGATCTGCTCACAGTCGCAGGTCGGG
ATCTGCGCGTAGCCGTAAATCTGGAACTCCGGAATCTCCACAAAGTCACA
GATCAGGTTCGTTGCAAAGTCGCAAGTCAGGATCGCCTCAGAGTCGTAGA
TCTGGTTCTCCCCAAAGTCGCAAATCGGGATCTACTCACAGCCGCAGATC
CGGTTCGGCCCACAGTCGCAGATCGGGATCCGCTCGGAGTCGCAAATCTG
GTTCGGCACAAAGTGACCGCTCTGAGTCTCGATCGAGGTCTCATAGCGGT
TCACTCAAGGGCAACGAGGAATCGCGGTCTAATTCGCCCAATCTGCAAAT
TGACGTAGAGCGTGCCAATTCCAAGAGCGGCAGTCGCAGCAGAAGTAGGA
GCAGGAGTGGCAGTCGCACTTCCAGATCGCGTTCCAAGACGGGCACGCCG
TCGCCCAATAGAAGTCGTAGTGGCAGCGCATCCGGCTCCGGCAGCGATGT
GGGTGTGCCCAAGAAGAAGGCACGCAAGGCGAGTGGCTCCGATCAAGAGA
AGAAAAAGAGCGGCAGCGATAGCGACATTGAGGAATCGCCCACCAAAGCT
AAGAAGTCACGGCTGATCGACACTGATAGCGATTCCAATCAGGATGTGGG
AAAGAAAGCTCCGGCTGCAGCTGACATATTTGGAGATGCCGATGATATAA
GTGACGATGAGGATGAGGCTGGACCAGCTGCCAGAAAATCCCCAGTGCGC
TCCAAGAGCCGCAGTCAAAGCAAGTCCCACTCCCACAGTCGTTCTATGAG
CCACTCGCGTTCCCGCTCCAGATCGCGATCCCGGGATAAAGTCGAGAGCC
AAGTAGAATCGGCGCCCAAGGAGGATGAGCCTGAACCGCTTCCGGAGACC
CGAATCGATGTGGAGATTCCGCGCATCTCTGCAGACCTGGGAAAAGAGCA
GCACTTTATCAAGCTTCCCAACTTTTTGTCAGTGGTCACGCATCCGTTTG
ATCCGGAAACCTACGAAGACGAGATCGACGAAGAGGAGACAATGGACGAG
GAGGGCAGACAGCGTATCAAGCTCAAAGTGAGCAACACTATCCGATGGCG
AGAGTACATGAACAATAAGGGCGACATGGTGCGCGAGTCTAATGCGCGAT
TCGTGCGCTGGTCCGACGGCAGCATGTCCCTTCACCTGGGCAACGAGATC
TTCGACGCCTACAGGCAGCCGCTGTTAGGTGACCACAATCATCTGTTCGT
CCGCCAAGGAACGGGTCTGCAGGGCCAGTCGGTCTTCAGGACCAAGCTCA
CTTTCCGTCCTCATTCCACGGAGTCCTTTACGCACAAGAAGATGACCATG
TCGCTGGCCGATCGATCCAGCAAGACCAGTGGCATTAAGATTCTTACGCA
GGTGGGCAAGGATCCCACCACGGATAGGCCAACGCAGCTCAGGGAGGAGG
AGGCCAAGCTGCGCCAGGCGATGCGCAATCAGCACAAGTCGCTGCCCAAG
AAAAAGAAACCAGGCGCGGGCGAACCACTGATTGGAGGCGGCACTTCGTC
TTACCAGCACGACGAAGGCAGCGACGATGAGAACGCCATCAGCCTGAGTG
CCATCAAGAACCGGTATAAGAAGGGCTCTGGTGCCGGCCAGGCGGAGGTT
AAGGCATCTACGATCTACTCGTCGGACGAAGACGAGGGCTCCGACTTCGA
GGCGCGTCGCAGCAAGAAGGTGGACAAGGCCAAGGCCAGCAAGGCACTGC
GCGACTCCGACAGCGAATCGGACGCCGGCAGCGCCAAGAGCGGCCACAGC
AACAAGAGCGGCGGAGAAGGGGGCAGCGCTAGTGGTAGCGAAAACGAGGG
CAGCCAGAAGAGCGGCGGCGGCAGCAGCAAGTCTGCCAGTGGAAGCGGCA
GTGGCAGTGGTTCCGGCAGCGGATCGGGCAGTGACAACGATGCAAGCTTT
CTAGACCAT
BO08746.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:53:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atu-RA | 2178 | CG1433-PA | 1..2175 | 17..2191 | 10875 | 100 | Plus |
| Atu-RA | 2178 | CG1433-PA | 318..450 | 382..514 | 200 | 76.7 | Plus |
| Atu-RA | 2178 | CG1433-PA | 366..498 | 334..466 | 200 | 76.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:53:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atu-RA | 2351 | CG1433-RA | 105..2279 | 17..2191 | 10875 | 100 | Plus |
| Atu-RA | 2351 | CG1433-RA | 422..554 | 382..514 | 200 | 76.7 | Plus |
| Atu-RA | 2351 | CG1433-RA | 470..602 | 334..466 | 200 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:53:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5614574..5615867 | 898..2191 | 6470 | 100 | Plus |
| 3R | 32079331 | 3R | 5613687..5614475 | 111..899 | 3945 | 100 | Plus |
| 3R | 32079331 | 3R | 5613559..5613623 | 47..111 | 325 | 100 | Plus |
| 3R | 32079331 | 3R | 5613910..5614042 | 382..514 | 200 | 76.7 | Plus |
| 3R | 32079331 | 3R | 5613958..5614090 | 334..466 | 200 | 76.7 | Plus |
Blast to na_te.dros performed 2014-11-26 21:53:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6796..6943 | 2022..2172 | 154 | 57 | Plus |
BO08746.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:05 Download gff for
BO08746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atu-RA | 1..2178 | 17..2195 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:18:04 Download gff for
BO08746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atu-RA | 99..2276 | 17..2195 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:39:48 Download gff for
BO08746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atu-RA | 105..2279 | 17..2193 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:05 Download gff for
BO08746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atu-RA | 99..2276 | 17..2195 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:45:01 Download gff for
BO08746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atu-RA | 105..2279 | 17..2193 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:45:01 Download gff for
BO08746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5613462..5613492 | 17..47 | 100 | -> | Plus |
| 3R | 5613560..5613623 | 48..111 | 100 | -> | Plus |
| 3R | 5613688..5614474 | 112..898 | 100 | -> | Plus |
| 3R | 5614575..5615867 | 899..2193 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:39:48 Download gff for
BO08746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1439184..1439214 | 17..47 | 100 | -> | Plus |
| arm_3R | 1439282..1439345 | 48..111 | 100 | -> | Plus |
| arm_3R | 1439410..1440196 | 112..898 | 100 | -> | Plus |
| arm_3R | 1440297..1441589 | 899..2193 | 99 | | Plus |
BO08746.pep Sequence
Translation from 16 to 2209
> BO08746.pep
MGSQNSDDDSGSSGSSRSGSRSVTPQGGSAPGSQRSRRSGSGSDRSRSGS
RSSRSRSGSGSPRSARSGSAESRHSQLSGSARSKRSRSAHSRRSGSARSR
KSGTPESPQSHRSGSLQSRKSGSPQSRRSGSPQSRKSGSTHSRRSGSAHS
RRSGSARSRKSGSAQSDRSESRSRSHSGSLKGNEESRSNSPNLQIDVERA
NSKSGSRSRSRSRSGSRTSRSRSKTGTPSPNRSRSGSASGSGSDVGVPKK
KARKASGSDQEKKKSGSDSDIEESPTKAKKSRLIDTDSDSNQDVGKKAPA
AADIFGDADDISDDEDEAGPAARKSPVRSKSRSQSKSHSHSRSMSHSRSR
SRSRSRDKVESQVESAPKEDEPEPLPETRIDVEIPRISADLGKEQHFIKL
PNFLSVVTHPFDPETYEDEIDEEETMDEEGRQRIKLKVSNTIRWREYMNN
KGDMVRESNARFVRWSDGSMSLHLGNEIFDAYRQPLLGDHNHLFVRQGTG
LQGQSVFRTKLTFRPHSTESFTHKKMTMSLADRSSKTSGIKILTQVGKDP
TTDRPTQLREEEAKLRQAMRNQHKSLPKKKKPGAGEPLIGGGTSSYQHDE
GSDDENAISLSAIKNRYKKGSGAGQAEVKASTIYSSDEDEGSDFEARRSK
KVDKAKASKALRDSDSESDAGSAKSGHSNKSGGEGGSASGSENEGSQKSG
GGSSKSASGSGSGSGSGSGSGSDNDASFLDH
BO08746.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:24:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atu-PA | 725 | CG1433-PA | 1..725 | 1..725 | 3648 | 100 | Plus |
| CG9915-PC | 820 | CG9915-PC | 117..554 | 2..359 | 400 | 37.4 | Plus |
| CG9915-PB | 820 | CG9915-PB | 117..554 | 2..359 | 400 | 37.4 | Plus |
| CG9915-PC | 820 | CG9915-PC | 102..580 | 10..474 | 384 | 35.3 | Plus |
| CG9915-PB | 820 | CG9915-PB | 102..580 | 10..474 | 384 | 35.3 | Plus |
| CG10887-PA | 676 | CG10887-PA | 34..675 | 75..716 | 383 | 25 | Plus |
| CG9915-PC | 820 | CG9915-PC | 65..377 | 4..354 | 343 | 39.3 | Plus |
| CG9915-PB | 820 | CG9915-PB | 65..377 | 4..354 | 343 | 39.3 | Plus |
| CG9915-PC | 820 | CG9915-PC | 55..369 | 16..355 | 273 | 37.6 | Plus |
| CG9915-PB | 820 | CG9915-PB | 55..369 | 16..355 | 273 | 37.6 | Plus |
| CG2469-PA | 1150 | CG2469-PA | 898..1149 | 109..369 | 259 | 35.5 | Plus |
| CG9915-PC | 820 | CG9915-PC | 61..319 | 102..356 | 202 | 30.6 | Plus |
| CG9915-PB | 820 | CG9915-PB | 61..319 | 102..356 | 202 | 30.6 | Plus |
| CG9915-PC | 820 | CG9915-PC | 49..268 | 105..356 | 168 | 33.9 | Plus |
| CG9915-PB | 820 | CG9915-PB | 49..268 | 105..356 | 168 | 33.9 | Plus |
