Clone Sequence Records
BO08801.3prime Sequence
920 bp (870 high quality bases) assembled on 2006-01-09
> BO08801.3prime
ATGGTCTAGAAAGCTTGCGTTGTCCTTCTTGATGCGGGTAGAGGTCATGC
GGTAAATGATGGAGTCCCTGCCGGGATCCATGGCAGCGATGGCGTAGCAG
ATAGCCAGCAGAGACAGTCCGAAGACGACCATGAACCACAGGATGATGTT
GAAGATCACCGGGTAGTCGCTGCCGTAGTAGACGGCCAGGTTGTAGGGAT
TGGTGGTGGAAGCGGCAATGGTATCACGCTTGGCACGCGATGCTGCCACG
TCCTTCTCCGTGGTCTGGACAAACAGAACCGAGTCGCTGGACTTCTGGGA
GGCAGCAAGCAGGCGGCTGATAGCGGCCGACAGCAATTTGTTGGCCTCCT
CCACGGCCACGGACTTCTCGCCATGAGCCTTGGCCACTCCATCGACGGAA
ACGCGCAGCATCAGGACATTCGAGGGCTTGGCCATCTCAGCCAGATGATC
GGCGGCACTGTTGATGAATCCAACCTCCTGGAGGAACTGCTTGTCAGCGG
TGTGCAGAGAGGGGTTCAGGTGCTTGGTGGGCTTGGCGGCTGGGGCCTCG
AAATCACCAAAGCAGGACTTCCAGGCTTGAACGCCATCGTCGAACTGCTC
AAAGTTAATATCGCAGACGGGCTCGTTGGCTGCCTCCAGTTCGGCGGCCA
GGGCGTTCAGAGAGGCGTCCGTTCCGGAGCCTGTCAGCTCGTAGGTCTTG
ACGTTGCCGGCGGTGGTCACGTGACCAATGCCCTGGACATGCACCAGAAT
GACGCCCTTGGCCAGGTTGAAGGGATCGTTGATGGTCAGTCCGTTCCAGT
TGGTATCGCCGCTGACGGCGTTGCCCATGGAAGCGTAGAGTACATCACCC
ACGTAGTGGCTTTCCAGTGCATCGTTGCCCTTGAAACTGATTGCCTTGGG
ACGGTTCAGCACGGTGAATT
BO08801.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:29:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8444-PA | 963 | CG8444-RA | 59..960 | 920..19 | 4510 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:32:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaM8.9-RA | 1468 | CG8444-RA | 146..1047 | 920..19 | 4510 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:32:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9261606..9262169 | 582..19 | 2820 | 100 | Minus |
3R | 32079331 | 3R | 9261006..9261345 | 920..581 | 1700 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 15:32:48 has no hits.
BO08801.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:53:49 Download gff for
BO08801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8444-PA | 59..963 | 15..920 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:51:07 Download gff for
BO08801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8444-PA | 59..963 | 15..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:15:32 Download gff for
BO08801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaM8.9-RA | 146..1051 | 14..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:36:11 Download gff for
BO08801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaM8.9-RA | 146..1051 | 14..920 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:36:11 Download gff for
BO08801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9261006..9261343 | 583..920 | 100 | -> | Minus |
3R | 9261606..9262173 | 14..582 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:15:32 Download gff for
BO08801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5086728..5087065 | 583..920 | 100 | -> | Minus |
arm_3R | 5087328..5087895 | 14..582 | 99 | | Minus |
BO08801.5prime Sequence
922 bp (842 high quality bases) assembled on 2006-01-09
> BO08801.5prime
GAAGTTATCAGTCGACATGTTGAGAGTTTTCGTGATTTTCTCGCTGTTTA
TAGCGGCCATCAATGCCTCTGGCGAATTCACCGTGCTGAACCGTCCCAAG
GCAATCAGTTTCAAGGGCAACGATGCACTGGAAAGCCACTACGTGGGTGA
TGTACTCTACGCTTCCATGGGCAACGCCGTCAGCGGCGATACCAACTGGA
ACGGACTGACCATCAACGATCCCTTCAACCTGGCCAAGGGCGTCATTCTG
GTGCATGTCCAGGGCATTGGTCACGTGACCACCGCCGGCAACGTCAAGAC
CTACGAGCTGACAGGCTCCGGAACGGACGCCTCTCTGAACGCCCTGGCCG
CCGAACTGGAGGCAGCCAACGAGCCCGTCTGCGATATTAACTTTGAGCAG
TTCGACGATGGCGTTCAAGCCTGGAAGTCCTGCTTTGGTGATTTCGAGGC
CCCAGCCGCCAAGCCCACCAAGCACCTGAACCCCTCTCTGCACACCGCTG
ACAAGCAGTTCCTCCAGGAGGTTGGATTCATCAACAGTGCCGCCGATCAT
CTGGCTGAGATGGCCAAGCCCTCGAATGTCCTGATGCTGCGCGTTTCCGT
CGATGGAGTGGCCAAGGCTCATGGCGAGAAGTCCGTGGCCGTGGAGGAGG
CCAACAAATTGCTGTCGGCCGCTATCAGCCGCCTGCTTGCTGCCTCCCAG
AAGTCCAGCGACTCGGTTCTGTTTGTCCAGACCACGGAGAAGGACGTGGC
AGCATCGCGTGCCAAGCGTGATACCATTGCCGCTTCCACCACCAATCCCT
ACAACCTGGCCGTCTACTACGGCAGCGACTACCCGGTGATCTTCAACATC
ATCCTGTGGTTCATGGTCGTCTTCGGACTGTCTCTGCTGGCTATCTGCTA
CGCCATCGCTGCCCTGGATCCC
BO08801.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:29:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8444-PA | 963 | CG8444-RA | 1..906 | 17..922 | 4505 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:36:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaM8.9-RA | 1468 | CG8444-RA | 88..993 | 17..922 | 4515 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:36:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9261606..9262115 | 413..922 | 2535 | 99.8 | Plus |
3R | 32079331 | 3R | 9260991..9261345 | 60..414 | 1775 | 100 | Plus |
3R | 32079331 | 3R | 9260725..9260767 | 17..59 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:36:56 has no hits.
BO08801.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:53:50 Download gff for
BO08801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8444-PA | 1..906 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:51:09 Download gff for
BO08801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8444-PA | 1..906 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:58:05 Download gff for
BO08801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaM8.9-RA | 88..993 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:41:19 Download gff for
BO08801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaM8.9-RA | 88..993 | 17..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:41:19 Download gff for
BO08801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9260725..9260767 | 17..59 | 100 | -> | Plus |
3R | 9260991..9261343 | 60..412 | 100 | -> | Plus |
3R | 9261606..9262115 | 413..922 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:58:05 Download gff for
BO08801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5086447..5086489 | 17..59 | 100 | -> | Plus |
arm_3R | 5086713..5087065 | 60..412 | 100 | -> | Plus |
arm_3R | 5087328..5087837 | 413..922 | 99 | | Plus |
BO08801.complete Sequence
994 bp (994 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631276
> BO08801.complete
GAAGTTATCAGTCGACATGTTGAGAGTTTTCGTGATTTTCTCGCTGTTTA
TAGCGGCCATCAATGCCTCTGGCGAATTCACCGTGCTGAACCGTCCCAAG
GCAATCAGTTTCAAGGGCAACGATGCACTGGAAAGCCACTACGTGGGTGA
TGTACTCTACGCTTCCATGGGCAACGCCGTCAGCGGCGATACCAACTGGA
ACGGACTGACCATCAACGATCCCTTCAACCTGGCCAAGGGCGTCATTCTG
GTGCATGTCCAGGGCATTGGTCACGTGACCACCGCCGGCAACGTCAAGAC
CTACGAGCTGACAGGCTCCGGAACGGACGCCTCTCTGAACGCCCTGGCCG
CCGAACTGGAGGCAGCCAACGAGCCCGTCTGCGATATTAACTTTGAGCAG
TTCGACGATGGCGTTCAAGCCTGGAAGTCCTGCTTTGGTGATTTCGAGGC
CCCAGCCGCCAAGCCCACCAAGCACCTGAACCCCTCTCTGCACACCGCTG
ACAAGCAGTTCCTCCAGGAGGTTGGATTCATCAACAGTGCCGCCGATCAT
CTGGCTGAGATGGCCAAGCCCTCGAATGTCCTGATGCTGCGCGTTTCCGT
CGATGGAGTGGCCAAGGCTCATGGCGAGAAGTCCGTGGCCGTGGAGGAGG
CCAACAAATTGCTGTCGGCCGCTATCAGCCGCCTGCTTGCTGCCTCCCAG
AAGTCCAGCGACTCGGTTCTGTTTGTCCAGACCACGGAGAAGGACGTGGC
AGCATCGCGTGCCAAGCGTGATACCATTGCCGCTTCCACCACCAATCCCT
ACAACCTGGCCGTCTACTACGGCAGCGACTACCCGGTGATCTTCAACATC
ATCCTGTGGTTCATGGTCGTCTTCGGACTGTCTCTGCTGGCTATCTGCTA
CGCCATCGCTGCCATGGATCCCGGCAGGGACTCCATCATTTACCGCATGA
CCTCTACCCGCATCAAGAAGGACAACGCAAGCTTTCTAGACCAT
BO08801.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:51:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaM8.9-RA | 963 | CG8444-PA | 1..960 | 17..976 | 4800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:51:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaM8.9-RA | 1468 | CG8444-RA | 88..1047 | 17..976 | 4800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:51:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9261606..9262169 | 413..976 | 2820 | 100 | Plus |
3R | 32079331 | 3R | 9260991..9261345 | 60..414 | 1775 | 100 | Plus |
3R | 32079331 | 3R | 9260725..9260767 | 17..59 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:51:25 has no hits.
BO08801.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:54 Download gff for
BO08801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8444-RA | 1..963 | 17..980 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:30:09 Download gff for
BO08801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8444-RA | 85..1048 | 17..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:51 Download gff for
BO08801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaM8.9-RA | 93..1047 | 22..978 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:54 Download gff for
BO08801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8444-RA | 85..1048 | 17..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:37 Download gff for
BO08801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaM8.9-RA | 93..1047 | 22..978 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:37 Download gff for
BO08801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9260730..9260767 | 22..59 | 100 | -> | Plus |
3R | 9260991..9261343 | 60..412 | 100 | -> | Plus |
3R | 9261606..9262169 | 413..978 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:51 Download gff for
BO08801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5086452..5086489 | 22..59 | 100 | -> | Plus |
arm_3R | 5086713..5087065 | 60..412 | 100 | -> | Plus |
arm_3R | 5087328..5087891 | 413..978 | 99 | | Plus |
BO08801.pep Sequence
Translation from 16 to 994
> BO08801.pep
MLRVFVIFSLFIAAINASGEFTVLNRPKAISFKGNDALESHYVGDVLYAS
MGNAVSGDTNWNGLTINDPFNLAKGVILVHVQGIGHVTTAGNVKTYELTG
SGTDASLNALAAELEAANEPVCDINFEQFDDGVQAWKSCFGDFEAPAAKP
TKHLNPSLHTADKQFLQEVGFINSAADHLAEMAKPSNVLMLRVSVDGVAK
AHGEKSVAVEEANKLLSAAISRLLAASQKSSDSVLFVQTTEKDVAASRAK
RDTIAASTTNPYNLAVYYGSDYPVIFNIILWFMVVFGLSLLAICYAIAAM
DPGRDSIIYRMTSTRIKKDNASFLDH
BO08801.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaM8.9-PA | 320 | CG8444-PA | 1..320 | 1..320 | 1622 | 100 | Plus |