Clone BO08801 Report

Search the DGRC for BO08801

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:88
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptVhaM8.9-RA
Protein status:BO08801.pep: validated full length
Sequenced Size:994

Clone Sequence Records

BO08801.3prime Sequence

920 bp (870 high quality bases) assembled on 2006-01-09

> BO08801.3prime
ATGGTCTAGAAAGCTTGCGTTGTCCTTCTTGATGCGGGTAGAGGTCATGC
GGTAAATGATGGAGTCCCTGCCGGGATCCATGGCAGCGATGGCGTAGCAG
ATAGCCAGCAGAGACAGTCCGAAGACGACCATGAACCACAGGATGATGTT
GAAGATCACCGGGTAGTCGCTGCCGTAGTAGACGGCCAGGTTGTAGGGAT
TGGTGGTGGAAGCGGCAATGGTATCACGCTTGGCACGCGATGCTGCCACG
TCCTTCTCCGTGGTCTGGACAAACAGAACCGAGTCGCTGGACTTCTGGGA
GGCAGCAAGCAGGCGGCTGATAGCGGCCGACAGCAATTTGTTGGCCTCCT
CCACGGCCACGGACTTCTCGCCATGAGCCTTGGCCACTCCATCGACGGAA
ACGCGCAGCATCAGGACATTCGAGGGCTTGGCCATCTCAGCCAGATGATC
GGCGGCACTGTTGATGAATCCAACCTCCTGGAGGAACTGCTTGTCAGCGG
TGTGCAGAGAGGGGTTCAGGTGCTTGGTGGGCTTGGCGGCTGGGGCCTCG
AAATCACCAAAGCAGGACTTCCAGGCTTGAACGCCATCGTCGAACTGCTC
AAAGTTAATATCGCAGACGGGCTCGTTGGCTGCCTCCAGTTCGGCGGCCA
GGGCGTTCAGAGAGGCGTCCGTTCCGGAGCCTGTCAGCTCGTAGGTCTTG
ACGTTGCCGGCGGTGGTCACGTGACCAATGCCCTGGACATGCACCAGAAT
GACGCCCTTGGCCAGGTTGAAGGGATCGTTGATGGTCAGTCCGTTCCAGT
TGGTATCGCCGCTGACGGCGTTGCCCATGGAAGCGTAGAGTACATCACCC
ACGTAGTGGCTTTCCAGTGCATCGTTGCCCTTGAAACTGATTGCCTTGGG
ACGGTTCAGCACGGTGAATT

BO08801.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:29:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG8444-PA 963 CG8444-RA 59..960 920..19 4510 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:32:51
Subject Length Description Subject Range Query Range Score Percent Strand
VhaM8.9-RA 1468 CG8444-RA 146..1047 920..19 4510 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9261606..9262169 582..19 2820 100 Minus
3R 32079331 3R 9261006..9261345 920..581 1700 100 Minus
Blast to na_te.dros performed on 2015-01-31 15:32:48 has no hits.

BO08801.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:53:49 Download gff for BO08801.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8444-PA 59..963 15..920 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:51:07 Download gff for BO08801.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8444-PA 59..963 15..920 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:15:32 Download gff for BO08801.3prime
Subject Subject Range Query Range Percent Splice Strand
VhaM8.9-RA 146..1051 14..920 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:36:11 Download gff for BO08801.3prime
Subject Subject Range Query Range Percent Splice Strand
VhaM8.9-RA 146..1051 14..920 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:36:11 Download gff for BO08801.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9261006..9261343 583..920 100 -> Minus
3R 9261606..9262173 14..582 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:15:32 Download gff for BO08801.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5086728..5087065 583..920 100 -> Minus
arm_3R 5087328..5087895 14..582 99   Minus

BO08801.5prime Sequence

922 bp (842 high quality bases) assembled on 2006-01-09

> BO08801.5prime
GAAGTTATCAGTCGACATGTTGAGAGTTTTCGTGATTTTCTCGCTGTTTA
TAGCGGCCATCAATGCCTCTGGCGAATTCACCGTGCTGAACCGTCCCAAG
GCAATCAGTTTCAAGGGCAACGATGCACTGGAAAGCCACTACGTGGGTGA
TGTACTCTACGCTTCCATGGGCAACGCCGTCAGCGGCGATACCAACTGGA
ACGGACTGACCATCAACGATCCCTTCAACCTGGCCAAGGGCGTCATTCTG
GTGCATGTCCAGGGCATTGGTCACGTGACCACCGCCGGCAACGTCAAGAC
CTACGAGCTGACAGGCTCCGGAACGGACGCCTCTCTGAACGCCCTGGCCG
CCGAACTGGAGGCAGCCAACGAGCCCGTCTGCGATATTAACTTTGAGCAG
TTCGACGATGGCGTTCAAGCCTGGAAGTCCTGCTTTGGTGATTTCGAGGC
CCCAGCCGCCAAGCCCACCAAGCACCTGAACCCCTCTCTGCACACCGCTG
ACAAGCAGTTCCTCCAGGAGGTTGGATTCATCAACAGTGCCGCCGATCAT
CTGGCTGAGATGGCCAAGCCCTCGAATGTCCTGATGCTGCGCGTTTCCGT
CGATGGAGTGGCCAAGGCTCATGGCGAGAAGTCCGTGGCCGTGGAGGAGG
CCAACAAATTGCTGTCGGCCGCTATCAGCCGCCTGCTTGCTGCCTCCCAG
AAGTCCAGCGACTCGGTTCTGTTTGTCCAGACCACGGAGAAGGACGTGGC
AGCATCGCGTGCCAAGCGTGATACCATTGCCGCTTCCACCACCAATCCCT
ACAACCTGGCCGTCTACTACGGCAGCGACTACCCGGTGATCTTCAACATC
ATCCTGTGGTTCATGGTCGTCTTCGGACTGTCTCTGCTGGCTATCTGCTA
CGCCATCGCTGCCCTGGATCCC

BO08801.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:29:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG8444-PA 963 CG8444-RA 1..906 17..922 4505 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:36:59
Subject Length Description Subject Range Query Range Score Percent Strand
VhaM8.9-RA 1468 CG8444-RA 88..993 17..922 4515 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9261606..9262115 413..922 2535 99.8 Plus
3R 32079331 3R 9260991..9261345 60..414 1775 100 Plus
3R 32079331 3R 9260725..9260767 17..59 215 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:36:56 has no hits.

BO08801.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:53:50 Download gff for BO08801.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8444-PA 1..906 17..922 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:51:09 Download gff for BO08801.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8444-PA 1..906 17..922 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:58:05 Download gff for BO08801.5prime
Subject Subject Range Query Range Percent Splice Strand
VhaM8.9-RA 88..993 17..922 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:41:19 Download gff for BO08801.5prime
Subject Subject Range Query Range Percent Splice Strand
VhaM8.9-RA 88..993 17..922 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:41:19 Download gff for BO08801.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9260725..9260767 17..59 100 -> Plus
3R 9260991..9261343 60..412 100 -> Plus
3R 9261606..9262115 413..922 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:58:05 Download gff for BO08801.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5086447..5086489 17..59 100 -> Plus
arm_3R 5086713..5087065 60..412 100 -> Plus
arm_3R 5087328..5087837 413..922 99   Plus

BO08801.complete Sequence

994 bp (994 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ631276

> BO08801.complete
GAAGTTATCAGTCGACATGTTGAGAGTTTTCGTGATTTTCTCGCTGTTTA
TAGCGGCCATCAATGCCTCTGGCGAATTCACCGTGCTGAACCGTCCCAAG
GCAATCAGTTTCAAGGGCAACGATGCACTGGAAAGCCACTACGTGGGTGA
TGTACTCTACGCTTCCATGGGCAACGCCGTCAGCGGCGATACCAACTGGA
ACGGACTGACCATCAACGATCCCTTCAACCTGGCCAAGGGCGTCATTCTG
GTGCATGTCCAGGGCATTGGTCACGTGACCACCGCCGGCAACGTCAAGAC
CTACGAGCTGACAGGCTCCGGAACGGACGCCTCTCTGAACGCCCTGGCCG
CCGAACTGGAGGCAGCCAACGAGCCCGTCTGCGATATTAACTTTGAGCAG
TTCGACGATGGCGTTCAAGCCTGGAAGTCCTGCTTTGGTGATTTCGAGGC
CCCAGCCGCCAAGCCCACCAAGCACCTGAACCCCTCTCTGCACACCGCTG
ACAAGCAGTTCCTCCAGGAGGTTGGATTCATCAACAGTGCCGCCGATCAT
CTGGCTGAGATGGCCAAGCCCTCGAATGTCCTGATGCTGCGCGTTTCCGT
CGATGGAGTGGCCAAGGCTCATGGCGAGAAGTCCGTGGCCGTGGAGGAGG
CCAACAAATTGCTGTCGGCCGCTATCAGCCGCCTGCTTGCTGCCTCCCAG
AAGTCCAGCGACTCGGTTCTGTTTGTCCAGACCACGGAGAAGGACGTGGC
AGCATCGCGTGCCAAGCGTGATACCATTGCCGCTTCCACCACCAATCCCT
ACAACCTGGCCGTCTACTACGGCAGCGACTACCCGGTGATCTTCAACATC
ATCCTGTGGTTCATGGTCGTCTTCGGACTGTCTCTGCTGGCTATCTGCTA
CGCCATCGCTGCCATGGATCCCGGCAGGGACTCCATCATTTACCGCATGA
CCTCTACCCGCATCAAGAAGGACAACGCAAGCTTTCTAGACCAT

BO08801.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
VhaM8.9-RA 963 CG8444-PA 1..960 17..976 4800 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
VhaM8.9-RA 1468 CG8444-RA 88..1047 17..976 4800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:51:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9261606..9262169 413..976 2820 100 Plus
3R 32079331 3R 9260991..9261345 60..414 1775 100 Plus
3R 32079331 3R 9260725..9260767 17..59 215 100 Plus
Blast to na_te.dros performed on 2014-11-27 19:51:25 has no hits.

BO08801.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:54 Download gff for BO08801.complete
Subject Subject Range Query Range Percent Splice Strand
CG8444-RA 1..963 17..980 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:30:09 Download gff for BO08801.complete
Subject Subject Range Query Range Percent Splice Strand
CG8444-RA 85..1048 17..981 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:51 Download gff for BO08801.complete
Subject Subject Range Query Range Percent Splice Strand
VhaM8.9-RA 93..1047 22..978 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:54 Download gff for BO08801.complete
Subject Subject Range Query Range Percent Splice Strand
CG8444-RA 85..1048 17..981 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:37 Download gff for BO08801.complete
Subject Subject Range Query Range Percent Splice Strand
VhaM8.9-RA 93..1047 22..978 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:37 Download gff for BO08801.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9260730..9260767 22..59 100 -> Plus
3R 9260991..9261343 60..412 100 -> Plus
3R 9261606..9262169 413..978 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:51 Download gff for BO08801.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5086452..5086489 22..59 100 -> Plus
arm_3R 5086713..5087065 60..412 100 -> Plus
arm_3R 5087328..5087891 413..978 99   Plus

BO08801.pep Sequence

Translation from 16 to 994

> BO08801.pep
MLRVFVIFSLFIAAINASGEFTVLNRPKAISFKGNDALESHYVGDVLYAS
MGNAVSGDTNWNGLTINDPFNLAKGVILVHVQGIGHVTTAGNVKTYELTG
SGTDASLNALAAELEAANEPVCDINFEQFDDGVQAWKSCFGDFEAPAAKP
TKHLNPSLHTADKQFLQEVGFINSAADHLAEMAKPSNVLMLRVSVDGVAK
AHGEKSVAVEEANKLLSAAISRLLAASQKSSDSVLFVQTTEKDVAASRAK
RDTIAASTTNPYNLAVYYGSDYPVIFNIILWFMVVFGLSLLAICYAIAAM
DPGRDSIIYRMTSTRIKKDNASFLDH

BO08801.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:34
Subject Length Description Subject Range Query Range Score Percent Strand
VhaM8.9-PA 320 CG8444-PA 1..320 1..320 1622 100 Plus