Clone Sequence Records
BO08805.3prime Sequence
878 bp (767 high quality bases) assembled on 2006-01-09
> BO08805.3prime
ATGGTCTAGAAAGCTTGCTTTGGAGCGCTTGGACCAGTCTTTGGGTGTCC
AGTGCAGGCATTTCGAGTCGATGCGGATCTTGCGCTTGTCCATTGCTCGC
CGGTGTTGCTCGATGATAACCCGGTTGATGCACACGATGTACTGGCCCTT
GTAGTAGTTGATCAGGTTCAGGTTCTGCAGCGTTGAGATCACGTCCTCTT
TTTTGATGGATGTGCATTCGCAGATGTCGTTTATAGTTATAGTGGGCTTT
TCGCCGTCCGTGCTCGGGTTTTGGCTGATAAAGATCTCCAGTATGGTTTG
CGCCCAGTACGATCGATAGGACAGCAAACCCAGATCAGACAATGGTTTCT
CCGGCGATCCCGTCTTGCCCTCGAACTTGGACAACTCGTAGCTGAACTCA
ATGAGCAGCTTGCCGTAGCCCTTGCGCTGATACGGAGGCATTGTGAGAAT
GCAGGCCACGTTGTAGTCCTCTGTGCTCTCCTTCTCCTTGGAGAAGTACC
CTACTATGTGGAAGCCGCGCGAGTCGAACTCTGTCATTACGTAGAAGAGA
AACGGATCGGTATCATAGTAGAGTGTCTTGTGGTCGAGAAAGAGTTTGGC
AAGCAGGCACAAGTTCTGGGCATACACCTTGTTTTTGCGTCCATCGATTT
CAAAGAAGGAAATTGTATGTTTGCGATAGATCTCGTTTCCCGGTGGATGC
CTAAGATTGCACTTGGACAGGTGCCTCTCCAGGCACTTCCTGCTCTTCCT
GTACTTCAGGCAGAACTCGCAGATGTAGATGCAGGGCATTTGACACAGCT
CTTGCGGATAGGGTGAGAAATACCAGGGCTTAATGCGATGCCTGCCCAGC
TCGATCATCTCCACGTTCCTTCATGCGG
BO08805.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:29:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6121-PA | 1625 | Tip60-RA | 774..1623 | 868..19 | 4250 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:25:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tip60-RC | 1852 | CG6121-RC | 862..1720 | 878..19 | 4275 | 99.9 | Minus |
| Tip60-RA | 2390 | CG6121-RA | 1400..2258 | 878..19 | 4275 | 99.9 | Minus |
| Tip60-RB | 2368 | CG6121-RB | 1355..2236 | 878..19 | 4035 | 97.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:25:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4115320..4115958 | 230..868 | 3195 | 100 | Plus |
| X | 23542271 | X | 4115004..4115214 | 19..229 | 1055 | 100 | Plus |
| 2R | 25286936 | 2R | 24102364..24102431 | 633..566 | 205 | 86.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:25:37 has no hits.
BO08805.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:53:55 Download gff for
BO08805.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tip60-PA | 765..1625 | 18..878 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:51:16 Download gff for
BO08805.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6121-PA | 765..1625 | 18..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:31:57 Download gff for
BO08805.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tip60-RA | 1400..2258 | 19..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:40:00 Download gff for
BO08805.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tip60-RA | 1400..2258 | 19..878 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:40:00 Download gff for
BO08805.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4114995..4115214 | 12..229 | 98 | <- | Plus |
| X | 4115320..4115967 | 230..878 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:31:57 Download gff for
BO08805.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4009028..4009247 | 12..229 | 98 | <- | Plus |
| arm_X | 4009353..4010000 | 230..878 | 99 | | Plus |
BO08805.5prime Sequence
907 bp (809 high quality bases) assembled on 2006-01-09
> BO08805.5prime
GAAGTTATCAGTCGACATGAAAATTAACCACAAATATGAGTTCGACGACG
ATGTGGCCTCCATATGCGAGTCAACGGCCGCCCTAACCGAGGGATGTCGT
TTACCCGTCAGGATGCACAAAACGGACGACTGGCCACTAGCGGAGATTGT
GAGCATCAAGGAGTTGGATGGGCGCCGGCAGTTTTACGTGCACTATGTGG
ACTTCAACAAGCGCTTGGACGAGTGGGTCAACGAGGAGGATCTGTACACG
CGAAAGGTGCAATTTCCGCGGAGAGACGGCTCACAAACAGGCACCAGCAC
TGGAGTGACCACGCCACAGCGCCACCATTCCCTAGCGGGCAGCGTTTCTC
GGCCTACATCACCGCAACACCCTGGTTCCGGGGCTCTGGCAGCCATCCCC
CAGACTCCTACTGGTGCATCAGGCAGTGTTCCTCCCCCTGCTGGCATTCC
AAACTCTGTGGCTCCACCCGGAACACCAAGCAGTGGGGGAGAGCTTGTGA
ATGGCAACAATCTGGCCGCAGCCCTTCAGAAACGCATCAATCGCAAGCGA
AAAAACCACGGAGGCTCGGCCCATGGACACCACAGTCTGACCAGTCAACA
GCAGCAGTCACATCCGCATCCTACAACTCCGCAGACACCCACGGCTACGC
CCGTGCATGTGACCGGCGACGGTTTAATAAGCGGAGCGGCCAATGATGAT
GGTGATGGATCGCAGGATGGCAAGACGCCCACGCCGAGGCAATCAGGCAG
CATGGTTACGCACCAGGACGACGTGGTCACCCGCATGAAGAACGTGGAGA
TGATCGAGCTGGGCAGGCATCGCATTAAGCCCTGGTATTTCTCACCCTAT
CCGCAAGAGCTGTGTCAAATGCCCTGCATCTACATCTGCGAGTTCTGCCT
GAAGTAC
BO08805.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:29:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6121-PA | 1625 | Tip60-RA | 1..891 | 17..907 | 4455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:31:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tip60-RC | 1852 | CG6121-RC | 98..988 | 17..907 | 4455 | 100 | Plus |
| Tip60-RB | 2368 | CG6121-RB | 591..1481 | 17..907 | 4455 | 100 | Plus |
| Tip60-RA | 2390 | CG6121-RA | 636..1526 | 17..907 | 4455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:31:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4115841..4116544 | 907..204 | 3520 | 100 | Minus |
| X | 23542271 | X | 4116599..4116726 | 203..76 | 640 | 100 | Minus |
| X | 23542271 | X | 4116792..4116852 | 77..17 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:31:25 has no hits.
BO08805.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:53:56 Download gff for
BO08805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tip60-PA | 1..891 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:51:17 Download gff for
BO08805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6121-PA | 1..891 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:57:19 Download gff for
BO08805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tip60-RA | 636..1526 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:37:27 Download gff for
BO08805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tip60-RA | 636..1526 | 17..907 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:37:27 Download gff for
BO08805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4115841..4116544 | 204..907 | 100 | <- | Minus |
| X | 4116599..4116725 | 77..203 | 100 | <- | Minus |
| X | 4116793..4116852 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:57:19 Download gff for
BO08805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4009874..4010577 | 204..907 | 100 | <- | Minus |
| arm_X | 4010632..4010758 | 77..203 | 100 | <- | Minus |
| arm_X | 4010826..4010885 | 17..76 | 100 | | Minus |
BO08805.complete Sequence
1657 bp (1657 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631277
> BO08805.complete
GAAGTTATCAGTCGACATGAAAATTAACCACAAATATGAGTTCGACGACG
ATGTGGCCTCCATATGCGAGTCAACGGCCGCCCTAACCGAGGGATGTCGT
TTACCCGTCAGGATGCACAAAACGGACGACTGGCCACTAGCGGAGATTGT
GAGCATCAAGGAGTTGGATGGGCGCCGGCAGTTTTACGTGCACTATGTGG
ACTTCAACAAGCGCTTGGACGAGTGGGTCAACGAGGAGGATCTGTACACG
CGAAAGGTGCAATTTCCGCGGAGAGACGGCTCACAAACAGGCACCAGCAC
TGGAGTGACCACGCCACAGCGCCACCATTCCCTAGCGGGCAGCGTTTCTC
GGCCTACATCACCGCAACACCCTGGTTCCGGGGCTCTGGCAGCCATCCCC
CAGACTCCTACTGGTGCATCAGGCAGTGTTCCTCCCCCTGCTGGCATTCC
AAACTCTGTGGCTCCACCCGGAACACCAAGCAGTGGGGGAGAGCTTGTGA
ATGGCAACAATCTGGCCGCAGCCCTTCAGAAACGCATCAATCGCAAGCGA
AAAAACCACGGAGGCTCGGCCCATGGACACCACAGTCTGACCAGTCAACA
GCAGCAGTCACATCCGCATCCTACAACTCCGCAGACACCCACGGCTACGC
CCGTGCATGTGACCGGCGACGGTTTAATAAGCGGAGCGGCCAATGATGAT
GGTGATGGATCGCAGGATGGCAAGACGCCCACGCCGAGGCAATCAGGCAG
CATGGTTACGCACCAGGACGACGTGGTCACCCGCATGAAGAACGTGGAGA
TGATCGAGCTGGGCAGGCATCGCATTAAGCCCTGGTATTTCTCACCCTAT
CCGCAAGAGCTGTGTCAAATGCCCTGCATCTACATCTGCGAGTTCTGCCT
GAAGTACAGGAAGAGCAGGAAGTGCCTGGAGAGGCACCTGTCCAAGTGCA
ATCTTAGGCATCCACCGGGAAACGAGATCTATCGCAAACATACAATTTCC
TTCTTTGAAATCGATGGACGCAAAAACAAGGTGTATGCCCAGAACTTGTG
CCTGCTTGCCAAACTCTTTCTCGACCACAAGACACTCTACTATGATACCG
ATCCGTTTCTCTTCTACGTAATGACAGAGTTCGACTCGCGCGGCTTCCAC
ATAGTAGGGTACTTCTCCAAGGAGAAGGAGAGCACAGAGGACTACAACGT
GGCCTGCATTCTCACAATGCCTCCGTATCAGCGCAAGGGCTACGGCAAGC
TGCTCATTGAGTTCAGCTACGAGTTGTCCAAGTTCGAGGGCAAGACGGGA
TCGCCGGAGAAACCATTGTCTGATCTGGGTTTGCTGTCCTATCGATCGTA
CTGGGCGCAAACCATACTGGAGATCTTTATCAGCCAAAACCCGAGCACGG
ACGGCGAAAAGCCCACTATAACTATAAACGACATCTGCGAATGCACATCC
ATCAAAAAAGAGGACGTGATCTCAACGCTGCAGAACCTGAACCTGATCAA
CTACTACAAGGGCCAGTACATCGTGTGCATCAACCGGGTTATCATCGAGC
AACACCGGCGAGCAATGGACAAGCGCAAGATCCGCATCGACTCGAAATGC
CTGCACTGGACACCCAAAGACTGGTCCAAGCGCTCCAAAGCAAGCTTTCT
AGACCAT
BO08805.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:36:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tip60-RC | 1626 | CG6121-PC | 1..1623 | 17..1639 | 8115 | 100 | Plus |
| Tip60-RA | 1626 | CG6121-PA | 1..1623 | 17..1639 | 8115 | 100 | Plus |
| Tip60-RB | 1422 | CG6121-PB | 1..1412 | 17..1428 | 7060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:36:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tip60-RC | 1852 | CG6121-RC | 98..1720 | 17..1639 | 8115 | 100 | Plus |
| Tip60-RA | 2390 | CG6121-RA | 636..2258 | 17..1639 | 8115 | 100 | Plus |
| Tip60-RB | 2368 | CG6121-RB | 591..2002 | 17..1428 | 7060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:36:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4115320..4116544 | 1428..204 | 6125 | 100 | Minus |
| X | 23542271 | X | 4115004..4115214 | 1639..1429 | 1055 | 100 | Minus |
| X | 23542271 | X | 4116599..4116726 | 203..76 | 640 | 100 | Minus |
| X | 23542271 | X | 4116792..4116852 | 77..17 | 305 | 100 | Minus |
| 2R | 25286936 | 2R | 24102364..24102431 | 1025..1092 | 205 | 86.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:36:35 has no hits.
BO08805.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:05 Download gff for
BO08805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tip60-RA | 1..1625 | 17..1640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:18:16 Download gff for
BO08805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tip60-RA | 591..2213 | 17..1639 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:08 Download gff for
BO08805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tip60-RA | 636..2258 | 17..1641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:05 Download gff for
BO08805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tip60-RA | 591..2213 | 17..1639 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:50 Download gff for
BO08805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tip60-RA | 636..2258 | 17..1641 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:50 Download gff for
BO08805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4115001..4115214 | 1429..1641 | 99 | <- | Minus |
| X | 4115320..4116544 | 204..1428 | 100 | <- | Minus |
| X | 4116599..4116725 | 77..203 | 100 | <- | Minus |
| X | 4116793..4116852 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:08 Download gff for
BO08805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4010632..4010758 | 77..203 | 100 | <- | Minus |
| arm_X | 4010826..4010885 | 17..76 | 100 | | Minus |
| arm_X | 4009034..4009247 | 1429..1641 | 99 | <- | Minus |
| arm_X | 4009353..4010577 | 204..1428 | 100 | <- | Minus |
BO08805.pep Sequence
Translation from 16 to 1657
> BO08805.pep
MKINHKYEFDDDVASICESTAALTEGCRLPVRMHKTDDWPLAEIVSIKEL
DGRRQFYVHYVDFNKRLDEWVNEEDLYTRKVQFPRRDGSQTGTSTGVTTP
QRHHSLAGSVSRPTSPQHPGSGALAAIPQTPTGASGSVPPPAGIPNSVAP
PGTPSSGGELVNGNNLAAALQKRINRKRKNHGGSAHGHHSLTSQQQQSHP
HPTTPQTPTATPVHVTGDGLISGAANDDGDGSQDGKTPTPRQSGSMVTHQ
DDVVTRMKNVEMIELGRHRIKPWYFSPYPQELCQMPCIYICEFCLKYRKS
RKCLERHLSKCNLRHPPGNEIYRKHTISFFEIDGRKNKVYAQNLCLLAKL
FLDHKTLYYDTDPFLFYVMTEFDSRGFHIVGYFSKEKESTEDYNVACILT
MPPYQRKGYGKLLIEFSYELSKFEGKTGSPEKPLSDLGLLSYRSYWAQTI
LEIFISQNPSTDGEKPTITINDICECTSIKKEDVISTLQNLNLINYYKGQ
YIVCINRVIIEQHRRAMDKRKIRIDSKCLHWTPKDWSKRSKASFLDH
BO08805.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:59:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tip60-PC | 541 | CG6121-PC | 1..541 | 1..541 | 2926 | 100 | Plus |
| Tip60-PA | 541 | CG6121-PA | 1..541 | 1..541 | 2926 | 100 | Plus |
| Tip60-PB | 473 | CG6121-PB | 1..470 | 1..470 | 2541 | 100 | Plus |
| mof-PA | 827 | CG3025-PA | 533..814 | 250..534 | 802 | 50.5 | Plus |
| chm-PC | 811 | CG5229-PC | 526..801 | 258..533 | 790 | 50.7 | Plus |
