Clone Sequence Records
BO08807.3prime Sequence
904 bp (865 high quality bases) assembled on 2006-01-09
> BO08807.3prime
ATGGTCTAGAAAGCTTGCTGACTGCAACTTCAAGTCTGCAAACGTTTTGG
GCACTGATTCCCCCAATTTGTCTCGCAGTTTGTTGGGCAAGGTTATTTCA
TCAGCGATGACTAAGTATTGATCATAAGGAAGCGATTCCAGCAGTACGGC
ATTCGCTATGTCAAATCTTTTGGGAAAGTCGGCCGATTGGGGCCACTTGG
CAAGCTCCCACTCCAAGGTCCACCTAGCAGCGAGGTCCTTGTAGTAACCC
TCTCTTAAAAAATCCACCTTTTCCAACTTGGCCAAGTGCGCCAAGCTCGT
TTCGTGATTGGCTGAGAAATCGATAGCACGCATTAGAAGGGCACTTGTTA
GTAGGGTCCACTTGCTGTCCGGCTCAAACTCCAGAAGATCTAGGCAGGAT
TGCAGCTGCGTTTGCAGCTCCGCCAGGAGATCCTTGCTGCAACTCGTAGT
GCCGTGTGGCGGCGCAATGTAATAGGCTCCGTTTTCCGAGCCAGACAGAG
GCGAGAGGTCAACCTTCTGATCGGAGAGCCTAAGGGAGTAAGCTGAGTTT
CTTTGGTAATCGAAGTTCTGCTGACACTTCCAACTGGTTCCACGCTTGTC
CACTGGTAGCCAGAACTCCAGTAAAATCGTTTGTCCTCCCCCAACTAGCT
CAGTCTTCAATTGCTTTATATCTGGGTAGGGCTTGTCAAGGGCGAGGACT
GCTCCATGTGACTCCAGTCGAAAAGCAGCTATCCTTGGAGCCCGATCCAA
CTGGGCGCCGCTGCCCAGCAACCAGCGCTGGTAGAACCAAGCACTGCTGT
CGTTAGGATCCGTGAAAGCAGCGGTCAGCACCATTTCAAGCTCCTTCTGC
AACTTCTCCTCACTCATGGGGCGGTCTCTCTGCTGGTTGGGGTAGAGCTC
CGGA
BO08807.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:29:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12007-PA | 1548 | CG12007-RA | 660..1545 | 904..19 | 4405 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:47:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12007-RA | 1853 | CG12007-RA | 741..1626 | 904..19 | 4415 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:47:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5128827..5129712 | 904..19 | 4415 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:47:03 has no hits.
BO08807.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:53:59 Download gff for
BO08807.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12007-PA | 661..1548 | 18..903 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:51:22 Download gff for
BO08807.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12007-PA | 661..1548 | 18..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:30:51 Download gff for
BO08807.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12007-RA | 742..1626 | 19..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:15:12 Download gff for
BO08807.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12007-RA | 742..1626 | 19..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:15:12 Download gff for
BO08807.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5128828..5129712 | 19..903 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:30:51 Download gff for
BO08807.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 954550..955434 | 19..903 | 99 | | Minus |
BO08807.5prime Sequence
911 bp (896 high quality bases) assembled on 2006-01-09
> BO08807.5prime
GAAGTTATCAGTCGACATGCACGGACGCGTAAAAGTGAGGACCACGGAGG
AGGAGCGCGAGCGGAAGAAGAAGGAGCAGGCTCTGAAAGTCCGGGCCTAC
CGTGCAGCCATGGGAAGGATTCAGAAGAAGAGGGAGGCGGGTGAGCTGGA
CAACGAAATGCTCAGCCTGACAGTTCAGATCTTGCTGCGGAATCCGGATG
TCAGCATGCTGTGGAACATCCGCAGGGAGTGCGTGCTGGAGAAGCTGTTC
AGGCTAAAGGAAGAGGAGGCCACGTGCGAGACGCCCAGCGAGGAGAAGCC
AGAGAAGGAAAACCAAACCGGTGAGAATAAGCCGAGTGAAAAGAAGGCCG
CTGGCGAGGACAAGGCCCATTCCATTTTCACCTGCGAACTGGACCTCACC
GAGCAGTGCCTAATGGTCAACCCGAAGTCCTACAACGCCTGGCACCACCG
CTGCTGGACCCTGGAACAGAATCCCAGGGCGGACTGGCAGCAGGAGGTGA
AACTGTGCAACAAGTACCTCAAATTCGACGAGCGCAACTTCCACACCTGG
GACTACAGGCGCTATGTGACCGGCAAGGCCATGGTGCCGGCCACCCAGGA
GCTGGACTTCTGCACCGAGAAGATCAGGGCTAACTTCTCCAACTACTCCA
GCTGGCACCACCGCAGTCTCCTGCTTCCGGAGCTCTACCCCAACCAGCAG
AGAGACCGGCCCATGAGTGAGGAGAAGTTGCAGAAGGAGCTTGAAATGGT
GCTGACCGCTGCTTTCACGGATCCTAACGACAGCAGTGCTTGGTTCTACC
AGCGCTGGTTGCTGGGCAGCGGCGCCCAGTTGGATCGGGCTCCAGGATAG
CTGCTTTTCGACTGGAGTCACATGGAGCAGTCCTCGCCCTTGACAAGCCC
CTACCAGATAT
BO08807.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:29:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12007-PA | 1548 | CG12007-RA | 1..828 | 17..844 | 4140 | 100 | Plus |
| CG12007-PA | 1548 | CG12007-RA | 829..885 | 844..900 | 285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 10:06:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12007-RA | 1853 | CG12007-RA | 82..977 | 17..911 | 4410 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 10:06:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5128168..5129063 | 17..911 | 4385 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-09 10:06:33 has no hits.
BO08807.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:54:00 Download gff for
BO08807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12007-PA | 1..896 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:51:23 Download gff for
BO08807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12007-PA | 1..896 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:26:51 Download gff for
BO08807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12007-RA | 74..977 | 8..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:55:42 Download gff for
BO08807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12007-RA | 74..977 | 8..911 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:55:42 Download gff for
BO08807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5128160..5129063 | 8..911 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:26:51 Download gff for
BO08807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 953882..954785 | 8..911 | 99 | | Plus |
BO08807.complete Sequence
1579 bp (1579 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631278
> BO08807.complete
GAAGTTATCAGTCGACATGCACGGACGCGTAAAAGTGAGGACCACGGAGG
AGGAGCGCGAGCGGAAGAAGAAGGAGCAGGCTCTGAAAGTCCGGGCCTAC
CGTGCAGCCATGGGAAGGATTCAGAAGAAGAGGGAGGCGGGTGAGCTGGA
CAACGAAATGCTCAGCCTGACAGTTCAGATCTTGCTGCGGAATCCGGATG
TCAGCATGCTGTGGAACATCCGCAGGGAGTGCGTGCTGGAGAAGCTGTTC
AGGCTAAAGGAAGAGGAGGCCACGTGCGAGACGCCCAGCGAGGAGAAGCC
AGAGAAGGAAAACCAAACCGGTGAGAATAAGCCGAGTGAAAAGAAGGCCG
CTGGCGAGGACAAGGCCCATTCCATTTTCACCTGCGAACTGGACCTCACC
GAGCAGTGCCTAATGGTCAACCCGAAGTCCTACAACGCCTGGCACCACCG
CTGCTGGACCCTGGAACAGAATCCCAGGGCGGACTGGCAGCAGGAGGTGA
AACTGTGCAACAAGTACCTCAAATTCGACGAGCGCAACTTCCACACCTGG
GACTACAGGCGCTATGTGACCGGCAAGGCCATGGTGCCGGCCACCCAGGA
GCTGGACTTCTGCACCGAGAAGATCAGGGCTAACTTCTCCAACTACTCCA
GCTGGCACCACCGCAGTCTCCTGCTTCCGGAGCTCTACCCCAACCAGCAG
AGAGACCGGCCCATGAGTGAGGAGAAGTTGCAGAAGGAGCTTGAAATGGT
GCTGACCGCTGCTTTCACGGATCCTAACGACAGCAGTGCTTGGTTCTACC
AGCGCTGGTTGCTGGGCAGCGGCGCCCAGTTGGATCGGGCTCCAAGGATA
GCTGCTTTTCGACTGGAGTCACATGGAGCAGTCCTCGCCCTTGACAAGCC
CTACCCAGATATAAAGCAATTGAAGACTGAGCTAGTTGGGGGAGGACAAA
CGATTTTACTGGAGTTCTGGCTACCAGTGGACAAGCGTGGAACCAGTTGG
AAGTGTCAGCAGAACTTCGATTACCAAAGAAACTCAGCTTACTCCCTTAG
GCTCTCCGATCAGAAGGTTGACCTCTCGCCTCTGTCTGGCTCGGAAAACG
GAGCCTATTACATTGCGCCGCCACACGGCACTACGAGTTGCAGCAAGGAT
CTCCTGGCGGAGCTGCAAACGCAGCTGCAATCCTGCCTAGATCTTCTGGA
GTTTGAGCCGGACAGCAAGTGGACCCTACTAACAAGTGCCCTTCTAATGC
GTGCTATCGATTTCTCAGCCAATCACGAAACGAGCTTGGCGCACTTGGCC
AAGTTGGAAAAGGTGGATTTTTTAAGAGAGGGTTACTACAAGGACCTCGC
TGCTAGGTGGACCTTGGAGTGGGAGCTTGCCAAGTGGCCCCAATCGGCCG
ACTTTCCCAAAAGATTTGACATAGCGAATGCCGTACTGCTGGAATCGCTT
CCTTATGATCAATACTTAGTCATCGCTGATGAAATAACCTTGCCCAACAA
ACTGCGAGACAAATTGGGGGAATCAGTGCCCAAAACGTTTGCAGACTTGA
AGTTGCAGTCAGCAAGCTTTCTAGACCAT
BO08807.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:09:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12007-RA | 1548 | CG12007-PA | 1..1545 | 17..1561 | 7725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12007-RA | 1853 | CG12007-RA | 82..1626 | 17..1561 | 7725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5128168..5129712 | 17..1561 | 7725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:09:22 has no hits.
BO08807.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:55 Download gff for
BO08807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12007-RA | 1..1548 | 17..1562 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:30:11 Download gff for
BO08807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12007-RA | 73..1625 | 8..1561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:12 Download gff for
BO08807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12007-RA | 82..1626 | 17..1563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:56 Download gff for
BO08807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12007-RA | 73..1625 | 8..1561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:03 Download gff for
BO08807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12007-RA | 82..1626 | 17..1563 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:03 Download gff for
BO08807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5128168..5129712 | 17..1563 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:12 Download gff for
BO08807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 953890..955434 | 17..1563 | 99 | | Plus |
BO08807.pep Sequence
Translation from 16 to 1579
> BO08807.pep
MHGRVKVRTTEEERERKKKEQALKVRAYRAAMGRIQKKREAGELDNEMLS
LTVQILLRNPDVSMLWNIRRECVLEKLFRLKEEEATCETPSEEKPEKENQ
TGENKPSEKKAAGEDKAHSIFTCELDLTEQCLMVNPKSYNAWHHRCWTLE
QNPRADWQQEVKLCNKYLKFDERNFHTWDYRRYVTGKAMVPATQELDFCT
EKIRANFSNYSSWHHRSLLLPELYPNQQRDRPMSEEKLQKELEMVLTAAF
TDPNDSSAWFYQRWLLGSGAQLDRAPRIAAFRLESHGAVLALDKPYPDIK
QLKTELVGGGQTILLEFWLPVDKRGTSWKCQQNFDYQRNSAYSLRLSDQK
VDLSPLSGSENGAYYIAPPHGTTSCSKDLLAELQTQLQSCLDLLEFEPDS
KWTLLTSALLMRAIDFSANHETSLAHLAKLEKVDFLREGYYKDLAARWTL
EWELAKWPQSADFPKRFDIANAVLLESLPYDQYLVIADEITLPNKLRDKL
GESVPKTFADLKLQSASFLDH
BO08807.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12007-PA | 515 | CG12007-PA | 1..515 | 1..515 | 2728 | 100 | Plus |
