Clone Sequence Records
BO08814.3prime Sequence
906 bp (855 high quality bases) assembled on 2006-01-10
> BO08814.3prime
ATGGTCTAGAAAGCTTGCGAAGAGCAGGGAGAAGAGGCTCCTCACGCCAG
TGGAGCCAGCTCCGGAACCGAGGGTAAAGCCCGTACTGGGCGTGCCACTG
CTGCGATGCCGCGAGGTGTGGCTGGAAACGTTAGCACGGACACGGTCGTA
GCTGGCAACATCCTCTTTGTCGGCATTGGCCAGCACCGATCGCATCGAGT
TGGCCACCGGCCACTTCTTCTTCATCACCAGATTGTTGGGTGGATCATGT
GCGGTACCAGCATCGACGGACCAAATGGTTACACTAGCACCGCCGAGTAC
CTTCGATCCGCGCGAGAACTTGAAGGCCAGTTCCTCGTCGCCGGCAATGC
GGGTTAGCTGCCAGCCAGTCAGATTGATCTCCTCGGTTCCCTTGTTGTGC
AGCTTGATGAAGCGTCCCTCAACGTCCGCCTCGATGATCTCCAGATCTCC
CTTGGCGGCGGCATTCACCGAGTACTCGGACAGAGTGCGATCCTCGCTCT
CATCGATCACGGTGCGGCGACGCTTCACGGCGCTGGATCCAGAGATGCCA
GGTGTAGCCGAGCGACGGCCACTGGGCGTGACCCTGCCGGATCGGGAACT
GGCACTGGCGGTCAAGTGGCTGCCATTGCTGGAGATACCGGAGTCGGTAG
TCGGGCGTCCGGGCGACTCGATGTTCAGGCGACGCTCCTCACCGCACAGC
AGTTTGTCGTAAGCGGCAATTTCGAGATCCAACGACACCTTGATGTCCAT
CAGACCCTGGTACTCCTGCAGCTGGTGAGCCATCTCGTCGCGCATACGCT
GTAGTTCGGCTTCCAGGAGGCGATGTACTGGTTGTGGCGCTGGCGCTCCG
TGTCCAAGAGGTTCTCCAGCTCCCGAATGCGAGCATTCAAGCCAGCATTG
GTGTCC
BO08814.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:29:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10119-PA | 1866 | LamC-RA | 1067..1863 | 815..19 | 3985 | 100 | Minus |
| CG10119-PA | 1866 | LamC-RA | 975..1066 | 906..815 | 460 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:00:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LamC-RA | 2367 | CG10119-RA | 1121..2009 | 906..19 | 4420 | 99.9 | Minus |
| LamC-RB | 2450 | CG10119-RB | 1121..1866 | 906..162 | 3705 | 99.9 | Minus |
| LamC-RB | 2450 | CG10119-RB | 1949..2092 | 162..19 | 720 | 100 | Minus |
| Lam-RD | 3191 | CG6944-RD | 1300..1424 | 794..670 | 250 | 81 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:59:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14571459..14572182 | 162..884 | 3570 | 99.9 | Plus |
| 2R | 25286936 | 2R | 14571168..14571313 | 19..164 | 730 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 11:00:03 has no hits.
BO08814.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:54:12 Download gff for
BO08814.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LamC-PA | 975..1866 | 18..906 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:51:39 Download gff for
BO08814.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10119-PA | 975..1866 | 18..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:31:56 Download gff for
BO08814.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LamC-RA | 1121..2014 | 13..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:41:39 Download gff for
BO08814.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LamC-RA | 1121..2014 | 13..906 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:41:39 Download gff for
BO08814.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14571163..14571311 | 13..162 | 98 | <- | Plus |
| 2R | 14571460..14572182 | 163..884 | 99 | <- | Plus |
| 2R | 14572253..14572274 | 885..906 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:31:56 Download gff for
BO08814.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10458668..10458816 | 13..162 | 98 | <- | Plus |
| arm_2R | 10458965..10459687 | 163..884 | 99 | <- | Plus |
| arm_2R | 10459758..10459779 | 885..906 | 100 | | Plus |
BO08814.5prime Sequence
920 bp (844 high quality bases) assembled on 2006-01-09
> BO08814.5prime
GAAGTTATCAGTCGACATGTCAGCACGCCGCGTCACATTGAACACACGCG
TTTCGCGCGCCTCCACCTCCACGCCGGTGGGCGGGGCATCCACCTCGTCA
AGGGTGGGCGCCACCTCACCCACCTCGCCCACGCGCACCAGCCGGCAGCA
GGAGAAGGAGGAACTGCAGCATTTGAACGATCGCCTGGCCTGCTACATCG
ATCGCATGCGCAACCTGGAGAACGAGAACAGCCGGCTCACCCAGGAACTG
AATCTCGCCCAGGATACCGTCAACAGGGAGACCTCTAATCTGAAGGCGGT
CTATGAGAAGGAGCTGGCCGCCGCTCGCAAGCTGCTCGATGAGACCGCCA
AAGAGAAGGCCAAGCTTGAGATCGATATCAAGCGTCTGTGGGAGGAGAAC
GACGACTTGAAGCCCAGACTCGACAAAAAGACGAAGGAGGCTACCGTGGC
AGAGAACAATGCCCGCCTGTATGAGAACCGCTACAACGAGGTGAATGGCA
AGTACAACCAATCGTTGGCCGATCGCAAGAAGTTCGAGGATCAGGCCAAG
GAGCTCGCTCTGGAGAACGAACGCCTGCGCCGCCAACTGGATGATCTTCG
CAAGCAGCTGGAGGCGGAGACGCTGGCCCGCGTCGATCTGGAGAACCAGA
ACCAGAGCCTGCGCGAGGAGCTGGCCTTCAAGGATCAGGTGCACACCCAG
GAGCTCACCGAGACCCGATCCCGTCGCCAGATCGAGATCAGCGAGATCGA
TGGCCGACTGTCGCGTCAATACGAGGCCAAGCTGCAGCAATCGCTCCAGG
AACTGCGTGATCAGTACGAGGGTCAAATGCGCATCAATCGCGAGGAGATC
GAGCTGCTGTACGACAATGAGATCCAGAAACTCAAGGCTGCTGCCAATAG
GGCTGCCCAGGGATCCGCTC
BO08814.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:29:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10119-PA | 1866 | LamC-RA | 1..904 | 17..920 | 4495 | 99.8 | Plus |
| CG6944-PA | 1869 | Lam-RA | 376..410 | 368..402 | 150 | 97.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:07:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LamC-RB | 2450 | CG10119-RB | 147..1050 | 17..920 | 4505 | 99.9 | Plus |
| LamC-RA | 2367 | CG10119-RA | 147..1050 | 17..920 | 4505 | 99.9 | Plus |
| Lam-RD | 3191 | CG6944-RD | 564..1046 | 368..850 | 215 | 71.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:07:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14572345..14572849 | 920..416 | 2510 | 99.8 | Minus |
| 2R | 25286936 | 2R | 14575225..14575625 | 417..17 | 2005 | 100 | Minus |
| 2L | 23513712 | 2L | 5543491..5543580 | 152..241 | 210 | 82.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:07:34 has no hits.
BO08814.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:54:13 Download gff for
BO08814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LamC-PA | 1..904 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:51:40 Download gff for
BO08814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10119-PA | 1..904 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:28:45 Download gff for
BO08814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LamC-RA | 147..1050 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:45:15 Download gff for
BO08814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LamC-RA | 147..1050 | 17..920 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:45:15 Download gff for
BO08814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14572345..14572847 | 418..920 | 99 | <- | Minus |
| 2R | 14575225..14575625 | 17..417 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:28:45 Download gff for
BO08814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10459850..10460352 | 418..920 | 99 | <- | Minus |
| arm_2R | 10462730..10463130 | 17..417 | 100 | | Minus |
BO08814.complete Sequence
1897 bp (1897 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631280
> BO08814.complete
GAAGTTATCAGTCGACATGTCAGCACGCCGCGTCACATTGAACACACGCG
TTTCGCGCGCCTCCACCTCCACGCCGGTGGGCGGGGCATCCACCTCGTCA
AGGGTGGGCGCCACCTCACCCACCTCGCCCACGCGCACCAGCCGGCAGCA
GGAGAAGGAGGAACTGCAGCATTTGAACGATCGCCTGGCCTGCTACATCG
ATCGCATGCGCAACCTGGAGAACGAGAACAGCCGGCTCACCCAGGAACTG
AATCTCGCCCAGGATACCGTCAACAGGGAGACCTCTAATCTGAAGGCGGT
CTATGAGAAGGAGCTGGCCGCCGCTCGCAAGCTGCTCGATGAGACCGCCA
AAGAGAAGGCCAAGCTTGAGATCGATATCAAGCGTCTGTGGGAGGAGAAC
GACGACTTGAAGCCCAGACTCGACAAAAAGACGAAGGAGGCTACCGTGGC
AGAGAACAATGCCCGCCTGTATGAGAACCGCTACAACGAGGTGAATGGCA
AGTACAACCAATCGTTGGCCGATCGCAAGAAGTTCGAGGATCAGGCCAAG
GAGCTCGCTCTGGAGAACGAACGCCTGCGCCGCCAACTGGATGATCTTCG
CAAGCAGCTGGAGGCGGAGACGCTGGCCCGCGTCGATCTGGAGAACCAGA
ACCAGAGCCTGCGCGAGGAGCTGGCCTTCAAGGATCAGGTGCACACCCAG
GAGCTCACCGAGACCCGATCCCGTCGCCAGATCGAGATCAGCGAGATCGA
TGGCCGACTGTCGCGTCAATACGAGGCCAAGCTGCAGCAATCGCTCCAGG
AACTGCGTGATCAGTACGAGGGTCAAATGCGCATCAATCGCGAGGAGATC
GAGCTGCTGTACGACAATGAGATCCAGAACCTCAAGGCTGCTGCCAATAG
GGCTGCCCAGGGATCCGCTCTTGCCACCGAGGAAGTCCGTCTCATGCGCA
CCAAGATCGATGGCTTGAACGCCAAGCTACAGAATCTGGAGGACACCAAT
GCTGGCTTGAATGCTCGCATTCGGGAGCTGGAGAACCTCTTGGACACGGA
GCGCCAGCGCCACAACCAGTACATCGCCTCCTTGGAAGCCGAACTACAGC
GTATGCGCGACGAGATGGCTCACCAGCTGCAGGAGTACCAGGGTCTGATG
GACATCAAGGTGTCGTTGGATCTCGAAATTGCCGCTTACGACAAACTGCT
GTGCGGTGAGGAGCGTCGCCTGAACATCGAGTCGCCCGGACGCCCGACTA
CCGACTCCGGTATCTCCAGCAATGGCAGCCACTTGACCGCCAGTGCCAGT
TCCCGATCCGGCAGGGTCACGCCCAGTGGCCGTCGCTCGGCTACACCTGG
CATCTCTGGATCCAGCGCCGTGAAGCGTCGCCGCACCGTGATCGATGAGA
GCGAGGATCGCACTCTGTCCGAGTACTCGGTGAATGCCGCCGCCAAGGGA
GATCTGGAGATCATCGAGGCGGACGTTGAGGGACGCTTCATCAAGCTGCA
CAACAAGGGAACCGAGGAGATCAATCTGACTGGCTGGCAGCTAACCCGCA
TTGCCGGCGACGAGGAACTGGCCTTCAAGTTCTCGCGCGGATCGAAGGTA
CTCGGCGGTGCTAGTGTAACCATTTGGTCCGTCGATGCTGGTACCGCACA
TGATCCACCCAACAATCTGGTGATGAAGAAGAAGTGGCCGGTGGCCAACT
CGATGCGATCGGTGCTGGCCAATGCCGACAAAGAGGATGTTGCCAGCTAC
GACCGTGTCCGTGCTAACGTTTCCAGCCACACCTCGCGGCATCGCAGCAG
TGGCACGCCCAGTACGGGCTTTACCCTCGGTTCCGGAGCTGGCTCCACTG
GCGTGAGGAGCCTCTTCTCCCTGCTCTTCGCAAGCTTTCTAGACCAT
BO08814.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:13:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LamC-RA | 1866 | CG10119-PA | 1..1863 | 17..1879 | 9315 | 100 | Plus |
| LamC-RB | 1923 | CG10119-PB | 1..1720 | 17..1736 | 8600 | 100 | Plus |
| LamC-RB | 1923 | CG10119-PB | 1803..1923 | 1736..1856 | 605 | 100 | Plus |
| Lam-RD | 1869 | CG6944-PD | 1112..1236 | 1104..1228 | 250 | 80 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:13:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LamC-RA | 2367 | CG10119-RA | 147..2009 | 17..1879 | 9315 | 100 | Plus |
| LamC-RB | 2450 | CG10119-RB | 147..1866 | 17..1736 | 8600 | 100 | Plus |
| LamC-RB | 2450 | CG10119-RB | 1949..2092 | 1736..1879 | 720 | 100 | Plus |
| Lam-RD | 3191 | CG6944-RD | 1300..1424 | 1104..1228 | 250 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:13:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14571459..14572182 | 1736..1013 | 3620 | 100 | Minus |
| 2R | 25286936 | 2R | 14572252..14572849 | 1013..416 | 2990 | 100 | Minus |
| 2R | 25286936 | 2R | 14575225..14575625 | 417..17 | 2005 | 100 | Minus |
| 2R | 25286936 | 2R | 14571168..14571313 | 1879..1734 | 730 | 100 | Minus |
| 2L | 23513712 | 2L | 5543491..5543580 | 152..241 | 210 | 82.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:13:36 has no hits.
BO08814.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:06 Download gff for
BO08814.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LamC-RA | 1..1866 | 17..1880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:18:18 Download gff for
BO08814.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LamC-RA | 178..2045 | 17..1885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:47:57 Download gff for
BO08814.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LamC-RA | 147..2009 | 17..1881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:06 Download gff for
BO08814.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LamC-RA | 178..2045 | 17..1885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:37 Download gff for
BO08814.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LamC-RA | 147..2009 | 17..1881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:37 Download gff for
BO08814.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14575225..14575625 | 17..417 | 100 | | Minus |
| 2R | 14571166..14571311 | 1736..1881 | 98 | <- | Minus |
| 2R | 14571460..14572182 | 1013..1735 | 100 | <- | Minus |
| 2R | 14572253..14572847 | 418..1012 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:47:57 Download gff for
BO08814.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10462730..10463130 | 17..417 | 100 | | Minus |
| arm_2R | 10458671..10458816 | 1736..1881 | 98 | <- | Minus |
| arm_2R | 10458965..10459687 | 1013..1735 | 100 | <- | Minus |
| arm_2R | 10459758..10460352 | 418..1012 | 100 | <- | Minus |
BO08814.pep Sequence
Translation from 16 to 1897
> BO08814.pep
MSARRVTLNTRVSRASTSTPVGGASTSSRVGATSPTSPTRTSRQQEKEEL
QHLNDRLACYIDRMRNLENENSRLTQELNLAQDTVNRETSNLKAVYEKEL
AAARKLLDETAKEKAKLEIDIKRLWEENDDLKPRLDKKTKEATVAENNAR
LYENRYNEVNGKYNQSLADRKKFEDQAKELALENERLRRQLDDLRKQLEA
ETLARVDLENQNQSLREELAFKDQVHTQELTETRSRRQIEISEIDGRLSR
QYEAKLQQSLQELRDQYEGQMRINREEIELLYDNEIQNLKAAANRAAQGS
ALATEEVRLMRTKIDGLNAKLQNLEDTNAGLNARIRELENLLDTERQRHN
QYIASLEAELQRMRDEMAHQLQEYQGLMDIKVSLDLEIAAYDKLLCGEER
RLNIESPGRPTTDSGISSNGSHLTASASSRSGRVTPSGRRSATPGISGSS
AVKRRRTVIDESEDRTLSEYSVNAAAKGDLEIIEADVEGRFIKLHNKGTE
EINLTGWQLTRIAGDEELAFKFSRGSKVLGGASVTIWSVDAGTAHDPPNN
LVMKKKWPVANSMRSVLANADKEDVASYDRVRANVSSHTSRHRSSGTPST
GFTLGSGAGSTGVRSLFSLLFASFLDH
BO08814.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:59:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LamC-PA | 621 | CG10119-PA | 1..621 | 1..621 | 3098 | 100 | Plus |
| LamC-PB | 640 | CG10119-PB | 1..573 | 1..573 | 2858 | 100 | Plus |
| Lam-PD | 622 | CG6944-PD | 17..591 | 9..595 | 1527 | 53.9 | Plus |
| Lam-PC | 622 | CG6944-PC | 17..591 | 9..595 | 1527 | 53.9 | Plus |
| Lam-PB | 622 | CG6944-PB | 17..591 | 9..595 | 1527 | 53.9 | Plus |
