Clone BO08816 Report

Search the DGRC for BO08816

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:88
Well:16
Vector:pDNR-Dual
Associated Gene/Transcriptbru-3-RA
Protein status:BO08816.pep: validated full length
Sequenced Size:1300

Clone Sequence Records

BO08816.3prime Sequence

920 bp (753 high quality bases) assembled on 2006-01-09

> BO08816.3prime
ATGGTCTAGAAAGCTTGCATAGGGTCGACTGGCATCCTTTGGCCGCTTCA
ATTGAACTTTCAGTCTTTTCATGCCAATCTGGAAGCCATTCATGGCCTGA
ATGGCCGCTTGAGCGCTGGCGGGATTATCGAATGAAACAAATCCGAAACA
TTTGCTCTGGTTTGTAGCACGATCGATGAAGACCTTGGAGCTGATCACAT
TGCCAAAGGGCAGGAACATTTGCATTAACTCGGCGTCGCCAAACTCCTGG
GGCAAATGGTAGATGAAGAGATTGCATCCCTCGGGTCCGGATATCGAACA
TCCTGGGAACATCAGAAAATCTTCACGCTGAGTGGGTGCAACCGCCGCTA
GGGGAGGTGGTAAAGCTTGTGGAAACTGTCCATAGACGGCGGGAAAGGCA
ACTCCTGGAAACGGTGGCAGACCAGGGAAGGCATGTTGCAGGGTAGCAGC
ATCGCCGTTTGGCAAACCTTGTGGCGGTATAGTCAAGTGCAGCGGATGTC
CTGGGAATGCCGTTTGTGGAATGCCGTTCGTGAAGACGCCGTCCGCGGCA
GCCGCCGCAGCAGCAGCGGCGGCCGCTCCGCCGGGCTGTCCGTTGGGCGT
GTTGGCGCCCATGTTGAAGTTGGGCATGGTCGGCGACGGCAGCGAGGGGG
GCTGGCCGGTGCCGTTTAGGCCATGAGGTATCTGCGTTGCCAGAGCCGCC
ATCGGGTTCATGTAGGCGGCTGCGGATCCGGGTGCCGTGGCAGCGGCGGC
CATCAGAGCGGCCTGTTGCTGTTGCTGGGCGTAGGCGCCGTACGGACTGA
ACTGATTAAAGACGAACGGATTCAGCAGGTTCATGTGACCGGCCATTTGC
TGCATGCGCCTTATTTGTCGCTCCTTCTCCGTGTCGGCGTATTTGACGAC
CAGGCTGGAGGATGCGCCCG

BO08816.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:29:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG12478-PA 1269 bru-3-RA 365..1266 920..19 4510 100 Minus
CG12478-PB 1092 bru-3-RB 188..1089 920..19 4510 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:39:14
Subject Length Description Subject Range Query Range Score Percent Strand
bru-3-RO 2665 CG43744-RO 1203..2104 920..19 4510 100 Minus
bru-3-RN 2929 CG43744-RN 1467..2368 920..19 4510 100 Minus
bru-3-RE 5007 CG43744-RE 1083..1984 920..19 4510 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:39:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13541722..13542001 498..777 1400 100 Plus
3L 28110227 3L 13538942..13539122 143..323 905 100 Plus
3L 28110227 3L 13542075..13542219 775..919 725 100 Plus
3L 28110227 3L 13538747..13538872 19..144 630 100 Plus
3L 28110227 3L 13541489..13541587 399..497 495 100 Plus
3L 28110227 3L 13540564..13540642 321..399 395 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:39:11 has no hits.

BO08816.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:54:16 Download gff for BO08816.3prime
Subject Subject Range Query Range Percent Splice Strand
bru-3-PA 365..1269 15..920 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:51:44 Download gff for BO08816.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12478-PB 188..1092 15..920 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:29:28 Download gff for BO08816.3prime
Subject Subject Range Query Range Percent Splice Strand
bru-3-RE 1083..1987 15..920 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:24:47 Download gff for BO08816.3prime
Subject Subject Range Query Range Percent Splice Strand
bru-3-RE 1083..1987 15..920 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:24:47 Download gff for BO08816.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 13541722..13541998 498..774 100 <- Plus
3L 13542075..13542219 775..920 99   Plus
3L 13538744..13538871 15..143 98 <- Plus
3L 13538943..13539119 144..320 100 <- Plus
3L 13540564..13540641 321..398 100 <- Plus
3L 13541489..13541587 399..497 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:29:28 Download gff for BO08816.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13535175..13535319 775..920 99   Plus
arm_3L 13531844..13531971 15..143 98 <- Plus
arm_3L 13532043..13532219 144..320 100 <- Plus
arm_3L 13533664..13533741 321..398 100 <- Plus
arm_3L 13534589..13534687 399..497 100 <- Plus
arm_3L 13534822..13535098 498..774 100 <- Plus

BO08816.5prime Sequence

922 bp (856 high quality bases) assembled on 2006-01-09

> BO08816.5prime
GAAGTTATCAGTCGACATGGTTCATATTATTGAATTGGTCGGCCAGCCGA
AGGTTGAGTTTGCTCAACAAGTTACTGTAAGTTGCCATCATCCATTAATA
CCACCAGCCATCAAATTAATGAACCGTGCTTTACAGCTGAAGCCAGCTGA
AAATGAAAGTCGCAGCGAGCATTTAGATCGCAAGCTGTTCGTTGGCATGC
TCAGCAAACAACAGACCGAAGACGATGTTAGACAAATCTTCCATCCCTTC
GGCACTATAGAGGAGTGCACCATACTTCGTGGGCCGGACGGTGCTAGCAA
AGGCTGCGCTTTCGTCAAATTTGGTTCGCAGCAGGAGGCCCAGTCAGCAA
TAACCAACCTACACGGAAGTCAAACTATGCCGGGCGCATCCTCCAGCCTG
GTCGTCAAATACGCCGACACGGAGAAGGAGCGACAAATAAGGCGCATGCA
GCAAATGGCCGGTCACATGAACCTGCTGAATCCGTTCGTCTTTAATCAGT
TCAGTCCGTACGGCGCCTACGCCCAGCAACAGCAACAGGCCGCTCTGATG
GCCGCCGCTGCCACGGCACCCGGATCCGCAGCCGCCTACATGAACCCGAT
GGCGGCTCTGGCAACGCAGATACCTCATGGCCTAAACGGCACCGGCCAGC
CCCCCTCGCTGCCGTCGCCGACCATGCCCAACTTCAACATGGGCGCCAAC
ACGCCCAACGGACAGCCCGGCGGAGCGGCCGCCGCTGCTGCTGCGGCGGC
TGCCGCGGACGGCGTCTTCACGAACGGCATTCCACAAACGGCATTCCCAG
GACATCCGCTGCACTTGACTATACCGCCACAAGGTTTGCCAAACGGCGAT
GCTGCTACCCCTGCACATGCCTTTCCTGGTCTGCCACCGTTTCCAGGAGT
TGCCTTTTCCCGCGTCTATGGA

BO08816.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:29:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG12478-PA 1269 bru-3-RA 1..844 17..860 4220 100 Plus
CG12478-PB 1092 bru-3-RB 109..667 302..860 2795 100 Plus
CG12478-PB 1092 bru-3-RB 1..60 17..76 300 100 Plus
CG12478-PB 1092 bru-3-RB 61..109 119..167 245 100 Plus
CG12478-PA 1269 bru-3-RA 849..891 865..907 190 97.6 Plus
CG12478-PB 1092 bru-3-RB 672..714 865..907 190 97.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
bru-3-RA 2587 CG43744-RA 761..1666 17..922 4425 99.4 Plus
bru-3-RC 2509 CG43744-RC 761..1646 17..902 4370 99.7 Plus
bru-3-RO 2665 CG43744-RO 935..1744 113..922 3930 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13541722..13542001 803..524 1400 100 Minus
3L 28110227 3L 13542075..13542219 526..382 725 100 Minus
3L 28110227 3L 13602341..13602477 303..167 685 100 Minus
3L 28110227 3L 13541489..13541587 902..804 420 94.9 Minus
3L 28110227 3L 13584191..13584273 383..301 415 100 Minus
3L 28110227 3L 13664413..13664478 82..17 315 98.5 Minus
3L 28110227 3L 13638517..13638565 167..119 245 100 Minus
3L 28110227 3L 13651555..13651596 118..77 210 100 Minus
Blast to na_te.dros performed on 2015-02-10 03:08:28 has no hits.

BO08816.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:54:17 Download gff for BO08816.5prime
Subject Subject Range Query Range Percent Splice Strand
bru-3-PA 1..905 17..921 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:51:46 Download gff for BO08816.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12478-PA 1..905 17..921 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:42:13 Download gff for BO08816.5prime
Subject Subject Range Query Range Percent Splice Strand
bru-3-RA 751..1665 7..921 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:13:42 Download gff for BO08816.5prime
Subject Subject Range Query Range Percent Splice Strand
bru-3-RA 751..1665 7..921 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:13:42 Download gff for BO08816.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13664419..13664488 7..76 94   Minus
3L 13541489..13541587 804..902 97 <- Minus
3L 13541722..13541998 527..803 100 <- Minus
3L 13542075..13542218 383..526 100 <- Minus
3L 13584192..13584271 303..382 100 <- Minus
3L 13602342..13602476 168..302 100 <- Minus
3L 13638517..13638565 119..167 100 <- Minus
3L 13651555..13651596 77..118 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:42:13 Download gff for BO08816.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13657519..13657588 7..76 94   Minus
arm_3L 13534589..13534687 804..902 97 <- Minus
arm_3L 13534822..13535098 527..803 100 <- Minus
arm_3L 13535175..13535318 383..526 100 <- Minus
arm_3L 13577292..13577371 303..382 100 <- Minus
arm_3L 13595442..13595576 168..302 100 <- Minus
arm_3L 13631617..13631665 119..167 100 <- Minus
arm_3L 13644655..13644696 77..118 100 <- Minus

BO08816.complete Sequence

1300 bp (1300 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ631281

> BO08816.complete
GAAGTTATCAGTCGACATGGTTCATATTATTGAATTGGTCGGCCAGCCGA
AGGTTGAGTTTGCTCAACAAGTTACTGTAAGTTGCCATCATCCATTAATA
CCACCAGCCATCAAATTAATGAACCGTGCTTTACAGCTGAAGCCAGCTGA
AAATGAAAGTCGCAGCGAGCATTTAGATCGCAAGCTGTTCGTTGGCATGC
TCAGCAAACAACAGACCGAAGACGATGTTAGACAAATCTTCCATCCCTTC
GGCACTATAGAGGAGTGCACCATACTTCGTGGGCCGGACGGTGCTAGCAA
AGGCTGCGCTTTCGTCAAATTTGGTTCGCAGCAGGAGGCCCAGTCAGCAA
TAACCAACCTACACGGAAGTCAAACTATGCCGGGCGCATCCTCCAGCCTG
GTCGTCAAATACGCCGACACGGAGAAGGAGCGACAAATAAGGCGCATGCA
GCAAATGGCCGGTCACATGAACCTGCTGAATCCGTTCGTCTTTAATCAGT
TCAGTCCGTACGGCGCCTACGCCCAGCAACAGCAACAGGCCGCTCTGATG
GCCGCCGCTGCCACGGCACCCGGATCCGCAGCCGCCTACATGAACCCGAT
GGCGGCTCTGGCAACGCAGATACCTCATGGCCTAAACGGCACCGGCCAGC
CCCCCTCGCTGCCGTCGCCGACCATGCCCAACTTCAACATGGGCGCCAAC
ACGCCCAACGGACAGCCCGGCGGAGCGGCCGCCGCTGCTGCTGCGGCGGC
TGCCGCGGACGGCGTCTTCACGAACGGCATTCCACAAACGGCATTCCCAG
GACATCCGCTGCACTTGACTATACCGCCACAAGGTTTGCCAAACGGCGAT
GCTGCTACCCTGCAACATGCCTTCCCTGGTCTGCCACCGTTTCCAGGAGT
TGCCTTTCCCGCCGTCTATGGACAGTTTCCACAAGCTTTACCACCTCCCC
TAGCGGCGGTTGCACCCACTCAGCGTGAAGATTTTCTGATGTTCCCAGGA
TGTTCGATATCCGGACCCGAGGGATGCAATCTCTTCATCTACCATTTGCC
CCAGGAGTTTGGCGACGCCGAGTTAATGCAAATGTTCCTGCCCTTTGGCA
ATGTGATCAGCTCCAAGGTCTTCATCGATCGTGCTACAAACCAGAGCAAA
TGTTTCGGATTTGTTTCATTCGATAATCCCGCCAGCGCTCAAGCGGCCAT
TCAGGCCATGAATGGCTTCCAGATTGGCATGAAAAGACTGAAAGTTCAAT
TGAAGCGGCCAAAGGATGCCAGTCGACCCTATGCAAGCTTTCTAGACCAT

BO08816.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
bru-3-RA 1269 CG43744-PA 1..1266 17..1282 6330 100 Plus
bru-3-RO 1212 CG43744-PO 40..1209 113..1282 5835 99.9 Plus
bru-3-RN 1212 CG43744-PN 40..1209 113..1282 5835 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:33:26
Subject Length Description Subject Range Query Range Score Percent Strand
bru-3-RA 2587 CG43744-RA 761..2026 17..1282 6330 100 Plus
bru-3-RO 2665 CG43744-RO 935..2104 113..1282 5835 99.9 Plus
bru-3-RN 2929 CG43744-RN 1199..2368 113..1282 5835 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13541722..13542001 803..524 1400 100 Minus
3L 28110227 3L 13538942..13539122 1158..978 905 100 Minus
3L 28110227 3L 13542075..13542219 526..382 725 100 Minus
3L 28110227 3L 13602341..13602477 303..167 685 100 Minus
3L 28110227 3L 13538747..13538872 1282..1157 630 100 Minus
3L 28110227 3L 13541489..13541587 902..804 495 100 Minus
3L 28110227 3L 13584191..13584273 383..301 415 100 Minus
3L 28110227 3L 13540564..13540642 980..902 395 100 Minus
3L 28110227 3L 13664413..13664478 82..17 315 98.5 Minus
3L 28110227 3L 13638517..13638565 167..119 245 100 Minus
3L 28110227 3L 13651555..13651596 118..77 210 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:33:24 has no hits.

BO08816.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:57 Download gff for BO08816.complete
Subject Subject Range Query Range Percent Splice Strand
bru-3-RA 1..1269 17..1286 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:56:29 Download gff for BO08816.complete
Subject Subject Range Query Range Percent Splice Strand
bru-3-RA 761..2026 17..1284 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:33 Download gff for BO08816.complete
Subject Subject Range Query Range Percent Splice Strand
bru-3-RA 761..2026 17..1284 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:57 Download gff for BO08816.complete
Subject Subject Range Query Range Percent Splice Strand
bru-3-RA 751..2029 7..1286 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:28 Download gff for BO08816.complete
Subject Subject Range Query Range Percent Splice Strand
bru-3-RA 761..2026 17..1284 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:28 Download gff for BO08816.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13664419..13664478 17..76 100   Minus
3L 13584192..13584271 303..382 100 <- Minus
3L 13602342..13602476 168..302 100 <- Minus
3L 13638517..13638565 119..167 100 <- Minus
3L 13651555..13651596 77..118 100 <- Minus
3L 13538745..13538871 1158..1284 98 <- Minus
3L 13538943..13539119 981..1157 100 <- Minus
3L 13540564..13540641 903..980 100 <- Minus
3L 13541489..13541587 804..902 100 <- Minus
3L 13541722..13541998 527..803 100 <- Minus
3L 13542075..13542218 383..526 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:33 Download gff for BO08816.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13644655..13644696 77..118 100 <- Minus
arm_3L 13657519..13657578 17..76 100   Minus
arm_3L 13531845..13531971 1158..1284 98 <- Minus
arm_3L 13532043..13532219 981..1157 100 <- Minus
arm_3L 13533664..13533741 903..980 100 <- Minus
arm_3L 13534589..13534687 804..902 100 <- Minus
arm_3L 13534822..13535098 527..803 100 <- Minus
arm_3L 13535175..13535318 383..526 100 <- Minus
arm_3L 13577292..13577371 303..382 100 <- Minus
arm_3L 13595442..13595576 168..302 100 <- Minus
arm_3L 13631617..13631665 119..167 100 <- Minus

BO08816.pep Sequence

Translation from 16 to 1300

> BO08816.pep
MVHIIELVGQPKVEFAQQVTVSCHHPLIPPAIKLMNRALQLKPAENESRS
EHLDRKLFVGMLSKQQTEDDVRQIFHPFGTIEECTILRGPDGASKGCAFV
KFGSQQEAQSAITNLHGSQTMPGASSSLVVKYADTEKERQIRRMQQMAGH
MNLLNPFVFNQFSPYGAYAQQQQQAALMAAAATAPGSAAAYMNPMAALAT
QIPHGLNGTGQPPSLPSPTMPNFNMGANTPNGQPGGAAAAAAAAAAADGV
FTNGIPQTAFPGHPLHLTIPPQGLPNGDAATLQHAFPGLPPFPGVAFPAV
YGQFPQALPPPLAAVAPTQREDFLMFPGCSISGPEGCNLFIYHLPQEFGD
AELMQMFLPFGNVISSKVFIDRATNQSKCFGFVSFDNPASAQAAIQAMNG
FQIGMKRLKVQLKRPKDASRPYASFLDH

BO08816.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:30
Subject Length Description Subject Range Query Range Score Percent Strand
bru-3-PA 422 CG43744-PA 1..422 1..422 2216 100 Plus
bru-3-PE 408 CG43744-PE 1..408 1..422 2112 96.7 Plus
bru-3-PH 416 CG43744-PH 1..416 1..422 2093 94.9 Plus
bru-3-PO 403 CG43744-PO 14..403 33..422 2047 100 Plus
bru-3-PN 403 CG43744-PN 14..403 33..422 2047 100 Plus