Clone Sequence Records
BO08822.3prime Sequence
950 bp (803 high quality bases) assembled on 2006-01-09
> BO08822.3prime
ATGGTCTAGAAAGCTTGCGTATTCCTCCTCCTCGTCAAAACCGTAGCCGA
ACTCATCGTCGTCTCCGCCCGTGTTGAGCATGTCCTGAAGAGTGGCCTCC
GGTTCTGCCTCGGGTTCGACGTCAGGATCATCAGCATCTTCGTCCAGGTC
ATCTGCTTCCACCACAACTGCTGGCTTGGTCTCCGCCTGCTCCACATCAG
CAGCTTTGCTGACTGGCAGACCCACTTCAAGTTTGGGACGTTTCCTACTG
GGTCCGGGCAGATCGTAGGCTGCCCTATTGCCCCTACTCTTGGAAGCAAC
AGGACCTTCTTCCACTATAACCGGCTGATGCTTCAGCTCTTCCAGAGTGC
TCGGTTTGGTATCGGCACTAGTTGTGGGAGAGTCATCCGTCAGCCCGCCC
ATGCCGTCAGTCAGGGTCTTGAGAATCTCGTAGTTGATCTTACTGGAGAT
CTTCTTCTCCTGCAGCATCTTTTCAATGGCCTCGCCGGCGGTGGAGGAGG
GACCAATGACTTTCTTGCGTGGCTTTCGCTTCTTCCGCTCCGGCTTTCCC
TCCTCGCGTTCCTTGGCCAGCCGCTCGTCGCGTTCCTTCTGCTCTTGCAG
ATACTCGGCATTGAGGTTCTTCCACATTTCCAACTTTGCCACCGACTCCT
CCTCTGTCAGAACGTACTGATCCAGTTCGTCGTCGTTCAGATCGTCGGTG
ATGAGTTCTTGTTCTTGCGGCTGCTTAGCCTTTTCCACGTCCTCCAGATC
GCTCTGGGTCACCCTGCAAATAGCCTCGATATCCGGCCGCAGGCCTTCAA
TCCCAGCCACCAAACCACCCGGTTCTGACTTCTTCACGTCCTCGTTCTTG
GCTATCAATTCCTTGATTACCTCTGCATTAGATTGTTCAATGAACTGCCT
GGACTCCTCCAGTTCAATATCCTTTTCCGAGCTGCTATTGGGCGTGCTTG
BO08822.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:29:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31256-PA | 1989 | Brf-RA | 1055..1986 | 950..19 | 4660 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:14:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Brf-RB | 2262 | CG31256-RB | 1230..2161 | 950..19 | 4660 | 100 | Minus |
| Brf-RA | 2975 | CG31256-RA | 1230..2161 | 950..19 | 4660 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:14:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17375844..17376641 | 153..950 | 3990 | 100 | Plus |
| 3R | 32079331 | 3R | 17375647..17375783 | 19..155 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:14:32 has no hits.
BO08822.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:54:26 Download gff for
BO08822.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Brf-PA | 1055..1989 | 18..950 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:51:57 Download gff for
BO08822.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31256-PA | 1055..1989 | 18..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:01:17 Download gff for
BO08822.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Brf-RA | 1230..2166 | 13..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:33:50 Download gff for
BO08822.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Brf-RA | 1230..2166 | 13..950 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:33:50 Download gff for
BO08822.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17375642..17375780 | 13..152 | 97 | <- | Plus |
| 3R | 17375844..17376641 | 153..950 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:01:17 Download gff for
BO08822.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13201364..13201502 | 13..152 | 97 | <- | Plus |
| arm_3R | 13201566..13202363 | 153..950 | 100 | | Plus |
BO08822.5prime Sequence
833 bp (831 high quality bases) assembled on 2006-01-09
> BO08822.5prime
GAAGTTATCAGTCGACATGTCTACGGGCCTAAAATGTCGCAATTGCGGAT
CCAACGAGATCGAGGAAGACAATGCTCGCGGAGATCGAGTTTGCATGAAC
TGCGGCTCGGTATTGGAGGATTCCCTCATTGTTTCCGAAGTGCAGTTCGA
GGAAGTTGGCCATGGAGCAGCCGCAATTGGCCAGTTTGTGTCCGCCGAGT
CGTCGGGCGGTGCCACCAACTATGGCTACGGCAAGTTTCAGGTGGGATCG
GGCACCGAATCCCGCGAGGTGACCATCAAAAAGGCCAAGAAGGACATCAC
ACTACTCTGCCAGCAGCTGCAGCTATCCCAGCACTATGCAGATACTGCTC
TGAATTTCTTCAAGATGGCATTGGGTAGGCATCTGACCCGCGGTAGGAAG
AGCACCCACATCTACGCCGCTTGCGTGTACATGACCTGCAGGACAGAGGG
CACCTCCCATCTCCTCATCGACATCAGCGACGTACAGCAAATCTGTTCCT
ATGAGCTTGGTCGTACCTACTTAAAGTTATCGCATGCCCTTTGTATCAAC
ATACCTTCTCTGGACCCGTGTTTATACATCATGCGTTTTGCCAACCGACT
GCAGTTGGGTGCCAAAACGCACGAGGTTTCGATGACGGCTCTGAGGATTG
TCCAGCGCATGAAAAAGGACTGCATGCACTCGGGACGACGACCCACTGGC
CTTTGTGGAGCAGCTTTGCTGATTGCGGCCCGGATGCACGATTTTAGTCG
CACCATGCTGGACGTGATAGGTGTGGTCAAGATACACGAGTCAACGCTCC
GAAAGCGTCTTTCGGAGTTTGCTGAAACGCCCT
BO08822.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:29:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31256-PA | 1989 | Brf-RA | 1..817 | 17..833 | 4085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:10:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Brf-RB | 2262 | CG31256-RB | 175..992 | 16..833 | 4090 | 100 | Plus |
| Brf-RA | 2975 | CG31256-RA | 175..992 | 16..833 | 4090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:10:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17390660..17391030 | 458..88 | 1855 | 100 | Minus |
| 3R | 32079331 | 3R | 17377117..17377267 | 713..563 | 755 | 100 | Minus |
| 3R | 32079331 | 3R | 17376934..17377055 | 833..712 | 610 | 100 | Minus |
| 3R | 32079331 | 3R | 17390496..17390600 | 563..459 | 525 | 100 | Minus |
| 3R | 32079331 | 3R | 17391090..17391163 | 89..16 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:10:32 has no hits.
BO08822.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:54:27 Download gff for
BO08822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Brf-PA | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:51:58 Download gff for
BO08822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31256-PA | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:28:25 Download gff for
BO08822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Brf-RA | 167..992 | 9..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:31:50 Download gff for
BO08822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Brf-RA | 167..992 | 9..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:31:50 Download gff for
BO08822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17376934..17377053 | 714..833 | 100 | <- | Minus |
| 3R | 17377117..17377266 | 564..713 | 100 | <- | Minus |
| 3R | 17390496..17390600 | 459..563 | 100 | <- | Minus |
| 3R | 17390660..17391028 | 90..458 | 100 | <- | Minus |
| 3R | 17391090..17391167 | 9..89 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:28:25 Download gff for
BO08822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13202656..13202775 | 714..833 | 100 | <- | Minus |
| arm_3R | 13202839..13202988 | 564..713 | 100 | <- | Minus |
| arm_3R | 13216218..13216322 | 459..563 | 100 | <- | Minus |
| arm_3R | 13216382..13216750 | 90..458 | 100 | <- | Minus |
| arm_3R | 13216812..13216889 | 9..89 | 95 | | Minus |
BO08822.complete Sequence
2020 bp (2020 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631282
> BO08822.complete
GAAGTTATCAGTCGACATGTCTACGGGCCTAAAATGTCGCAATTGCGGAT
CCAACGAGATCGAGGAAGACAATGCTCGCGGAGATCGAGTTTGCATGAAC
TGCGGCTCGGTATTGGAGGATTCCCTCATTGTTTCCGAAGTGCAGTTCGA
GGAAGTTGGCCATGGAGCAGCCGCAATTGGCCAGTTTGTGTCCGCCGAGT
CGTCGGGCGGTGCCACCAACTATGGCTACGGCAAGTTTCAGGTGGGATCG
GGCACCGAATCCCGCGAGGTGACCATCAAAAAGGCCAAGAAGGACATCAC
ACTACTCTGCCAGCAGCTGCAGCTATCCCAGCACTATGCAGATACTGCTC
TGAATTTCTTCAAGATGGCATTGGGTAGGCATCTGACCCGCGGTAGGAAG
AGCACCCACATCTACGCCGCTTGCGTGTACATGACCTGCAGGACAGAGGG
CACCTCCCATCTCCTCATCGACATCAGCGACGTACAGCAAATCTGTTCCT
ATGAGCTTGGTCGTACCTACTTAAAGTTATCGCATGCCCTTTGTATCAAC
ATACCTTCTCTGGACCCGTGTTTATACATCATGCGTTTTGCCAACCGACT
GCAGTTGGGTGCCAAAACGCACGAGGTTTCGATGACGGCTCTGAGGATTG
TCCAGCGCATGAAAAAGGACTGCATGCACTCGGGACGACGACCCACTGGC
CTTTGTGGAGCAGCTTTGCTGATTGCGGCCCGGATGCACGATTTTAGTCG
CACCATGCTGGACGTGATAGGTGTGGTCAAGATACACGAGTCAACGCTCC
GAAAGCGTCTTTCGGAGTTTGCTGAAACGCCCTCGGGAGGGCTAACCCTG
GAGGAGTTCATGACCGTTGACTTGGAGCGCGAACAGGATCCGCCTTCCTT
TAAGGCAGCACGCAAAAAGGATCGTGAGAGAATCAAAGATATGGGCGAGC
ATGAGCTAACAGAATTGCAAAAAGAAATTGATGCTCATCTGGAAAAAGAT
CTAGGCAAGTACTCAAACTCCGTTTACCGTCAGCTGACTAAGGGTAAGGG
ATTAAGTCCACTGAGCTCTCCAAGCACGCCCAATAGCAGCTCGGAAAAGG
ATATTGAACTGGAGGAGTCCAGGCAGTTCATTGAACAATCTAATGCAGAG
GTAATCAAGGAATTGATAGCCAAGAACGAGGACGTGAAGAAGTCAGAACC
GGGTGGTTTGGTGGCTGGGATTGAAGGCCTGCGGCCGGATATCGAGGCTA
TTTGCAGGGTGACCCAGAGCGATCTGGAGGACGTGGAAAAGGCTAAGCAG
CCGCAAGAACAAGAACTCATCACCGACGATCTGAACGACGACGAACTGGA
TCAGTACGTTCTGACAGAGGAGGAGTCGGTGGCAAAGTTGGAAATGTGGA
AGAACCTCAATGCCGAGTATCTGCAAGAGCAGAAGGAACGCGACGAGCGG
CTGGCCAAGGAACGCGAGGAGGGAAAGCCGGAGCGGAAGAAGCGAAAGCC
ACGCAAGAAAGTCATTGGTCCCTCCTCCACCGCCGGCGAGGCCATTGAAA
AGATGCTGCAGGAGAAGAAGATCTCCAGTAAGATCAACTACGAGATTCTC
AAGACCCTGACTGACGGCATGGGCGGGCTGACGGATGACTCTCCCACAAC
TAGTGCCGATACCAAACCGAGCACTCTGGAAGAGCTGAAGCATCAGCCGG
TTATAGTGGAAGAAGGTCCTGTTGCTTCCAAGAGTAGGGGCAATAGGGCA
GCCTACGATCTGCCCGGACCCAGTAGGAAACGTCCCAAACTTGAAGTGGG
TCTGCCAGTCAGCAAAGCTGCTGATGTGGAGCAGGCGGAGACCAAGCCAG
CAGTTGTGGTGGAAGCAGATGACCTGGACGAAGATGCTGATGATCCTGAC
GTCGAACCCGAGGCAGAACCGGAGGCCACTCTTCAGGACATGCTCAACAC
GGGCGGAGACGACGATGAGTTCGGCTACGGTTTTGACGAGGAGGAGGAAT
ACGCAAGCTTTCTAGACCAT
BO08822.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:31:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Brf-RB | 1989 | CG31256-PB | 1..1986 | 17..2002 | 9930 | 100 | Plus |
| Brf-RA | 1989 | CG31256-PA | 1..1986 | 17..2002 | 9930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:31:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Brf-RB | 2262 | CG31256-RB | 175..2161 | 16..2002 | 9935 | 100 | Plus |
| Brf-RA | 2975 | CG31256-RA | 175..2161 | 16..2002 | 9935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:31:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17375844..17376771 | 1868..941 | 4640 | 100 | Minus |
| 3R | 32079331 | 3R | 17390660..17391030 | 458..88 | 1855 | 100 | Minus |
| 3R | 32079331 | 3R | 17376827..17377055 | 940..712 | 1145 | 100 | Minus |
| 3R | 32079331 | 3R | 17377117..17377267 | 713..563 | 755 | 100 | Minus |
| 3R | 32079331 | 3R | 17375647..17375783 | 2002..1866 | 685 | 100 | Minus |
| 3R | 32079331 | 3R | 17390496..17390600 | 563..459 | 525 | 100 | Minus |
| 3R | 32079331 | 3R | 17391090..17391163 | 89..16 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:31:13 has no hits.
BO08822.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:53 Download gff for
BO08822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Brf-RA | 1..1989 | 17..2003 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:54:30 Download gff for
BO08822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Brf-RA | 171..2156 | 17..2004 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:35 Download gff for
BO08822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Brf-RA | 176..2161 | 17..2004 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:53 Download gff for
BO08822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Brf-RA | 162..2161 | 9..2008 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:19:45 Download gff for
BO08822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Brf-RA | 176..2161 | 17..2004 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:19:45 Download gff for
BO08822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17375645..17375780 | 1869..2004 | 98 | <- | Minus |
| 3R | 17375844..17376771 | 941..1868 | 100 | <- | Minus |
| 3R | 17376827..17377053 | 714..940 | 100 | <- | Minus |
| 3R | 17377117..17377266 | 564..713 | 100 | <- | Minus |
| 3R | 17390496..17390600 | 459..563 | 100 | <- | Minus |
| 3R | 17390660..17391028 | 90..458 | 100 | <- | Minus |
| 3R | 17391090..17391162 | 17..89 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:35 Download gff for
BO08822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13201367..13201502 | 1869..2004 | 98 | <- | Minus |
| arm_3R | 13201566..13202493 | 941..1868 | 100 | <- | Minus |
| arm_3R | 13202549..13202775 | 714..940 | 100 | <- | Minus |
| arm_3R | 13202839..13202988 | 564..713 | 100 | <- | Minus |
| arm_3R | 13216218..13216322 | 459..563 | 100 | <- | Minus |
| arm_3R | 13216382..13216750 | 90..458 | 100 | <- | Minus |
| arm_3R | 13216812..13216884 | 17..89 | 100 | | Minus |
BO08822.pep Sequence
Translation from 16 to 2020
> BO08822.pep
MSTGLKCRNCGSNEIEEDNARGDRVCMNCGSVLEDSLIVSEVQFEEVGHG
AAAIGQFVSAESSGGATNYGYGKFQVGSGTESREVTIKKAKKDITLLCQQ
LQLSQHYADTALNFFKMALGRHLTRGRKSTHIYAACVYMTCRTEGTSHLL
IDISDVQQICSYELGRTYLKLSHALCINIPSLDPCLYIMRFANRLQLGAK
THEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAARMHDFSRTMLDV
IGVVKIHESTLRKRLSEFAETPSGGLTLEEFMTVDLEREQDPPSFKAARK
KDRERIKDMGEHELTELQKEIDAHLEKDLGKYSNSVYRQLTKGKGLSPLS
SPSTPNSSSEKDIELEESRQFIEQSNAEVIKELIAKNEDVKKSEPGGLVA
GIEGLRPDIEAICRVTQSDLEDVEKAKQPQEQELITDDLNDDELDQYVLT
EEESVAKLEMWKNLNAEYLQEQKERDERLAKEREEGKPERKKRKPRKKVI
GPSSTAGEAIEKMLQEKKISSKINYEILKTLTDGMGGLTDDSPTTSADTK
PSTLEELKHQPVIVEEGPVASKSRGNRAAYDLPGPSRKRPKLEVGLPVSK
AADVEQAETKPAVVVEADDLDEDADDPDVEPEAEPEATLQDMLNTGGDDD
EFGYGFDEEEEYASFLDH
BO08822.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:59:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Brf-PB | 662 | CG31256-PB | 1..662 | 1..662 | 3392 | 100 | Plus |
| Brf-PA | 662 | CG31256-PA | 1..662 | 1..662 | 3392 | 100 | Plus |
| TfIIB-PB | 315 | CG5193-PB | 24..286 | 17..263 | 189 | 23.3 | Plus |
| TfIIB-PA | 315 | CG5193-PA | 24..286 | 17..263 | 189 | 23.3 | Plus |
