Clone Sequence Records
BO08823.3prime Sequence
910 bp (787 high quality bases) assembled on 2006-01-09
> BO08823.3prime
ATGGTCTAGAAAGCTTGCCAGATCCCATGAGAAGAGATGGTGCTTCACCA
GCATGTCCCTTACTCCGTCCTTGAGCGGTTGCGACTCCTTGCCGCGCTTC
GGCGGCAGTTCCCAGTCGGGGTTCAGATTGAAGGCGAACTGCGAGAGAAT
GCGCAGCTCGCACTTGATCTGCACCCAACCGGGTGAGTCAATAAAGCTCC
AGGAATGATACCACTTCTGTACGACCTCCTGGCAGGCGCACAGCACCTCC
AACCAGAGGTGAAGAACCTGTTCGTTGAGGCCCAAACAGATCAGCGAGCG
TAACTTAACATCCATTTGTGCGTGCGCATCATCGTGCGTCTGATTGATGG
CCTGAACGCAGCGATAGAGTAGCTCCTCGGGCGTTAGTACCTTGCCATCC
TCATCCAGTCGATACGTTTTGCAGAGCACAAGACGGCTGTACACCGACTC
AAAATCCTTCTCCACCTCCCGGGTGGCAGCCTCCTCAATATACAGCCAGG
GGTGTATTGGTCCACCCAGAAACGTGGGCCGTTTCATGCCGTGCTCCAGA
AAGGCCTTGATGGCCGGCGCCAAGGTGCCACGCACCAGGTCCGTTACAGT
TTCCGAAATGGCATCATCTCCGGCTGATGTGTACAACTTGCTCCGCTCGT
CGAGCAGCTCCACGAACTTGGCTGGAAACCAGCCGCGCAGGCCGTTCAGT
TCTCCCACCCAGCAGTGTTCGTCTTTTTGACTGATGATTGTTATGATGTC
GTTCCGCCGAAATCCCAACTCATCGTCGTCGTGCCGCTCAAAGTCGTGCA
GGGCTTTAGCCCTTCGCTTTCGCGTCCTTGCCACATTGATAAAGTTTTCG
TGGTCCTTGGCATGCGACTCGGTGCTGTAGTTGGCCGTCAGCTGGATGTG
ACCGGCAAGC
BO08823.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:29:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12241-PA | 2415 | CG12241-RA | 1521..2412 | 910..19 | 4460 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:37:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12241-RA | 2986 | CG12241-RA | 1676..2567 | 910..19 | 4460 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:37:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15221061..15221952 | 910..19 | 4460 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:37:33 has no hits.
BO08823.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:54:28 Download gff for
BO08823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12241-PA | 1521..2415 | 16..910 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:52:00 Download gff for
BO08823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12241-PA | 1521..2415 | 16..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:29:09 Download gff for
BO08823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12241-RA | 1676..2578 | 8..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:15 Download gff for
BO08823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12241-RA | 1676..2578 | 8..910 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:15 Download gff for
BO08823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15221061..15221963 | 8..910 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:29:09 Download gff for
BO08823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11046783..11047685 | 8..910 | 99 | | Minus |
BO08823.5prime Sequence
951 bp (769 high quality bases) assembled on 2006-01-09
> BO08823.5prime
GAAGTTATCAGTCGACATGGACATGGCCAGGAGCATTTTTGGCCGCGACC
ATGAGGGTTACGTGGGCCGTGAAGAGCATACGCGCAAACTGCAGAACCTG
GGCTCGGAAGACGATCTGGGAGAGCTGCCGCCTATGATGGAGGAACTAAG
TGTGGCCGATGGCCTGCGACCAAATCCCGGTGGGCCATTCTCCGCTCTTA
CCGCCTCCATGTGGCCACAGGAAATCCTAGCCAAGCTGGGCGGTGGCGCG
GAATTGGCTTCCGGCCCAAACGACCAGCCGGAGTACCGTTTTGACGAATT
TGGCTTCCGGGTGGAGGAGGAGGACGGTCCGGAGCAGAGCTCCAACAAAT
TGCTGAGCATACCCTTTGTAGAGGACGCGCAGCAGCGATTGCAGTGGATC
GCCCACCTGGAGTTCTCACACAACAAGGAGGCTGCCGAGCTGAGCTGGGA
GCATGTGGATGTAATGCTCCCACGCACAGAAAAGCTGCGCAATATGGTCC
GTCAGGGTATCCCGCACACGTTGCGTGCCCAGATGTGGATGCGTCTATCA
GGAGCGTTGGCCAAGAAGCAAAAGAGCGAGACCAGCTACCACGATATAGT
TAAAGCTTCTAGCAATGACCAGCTGATGACTTCGAAGCAGATCGAGAAGG
ACCTTTTGCGCATCCTGCCAACAAATGCCTGCTTTAGCAATCCGAATGGG
ACAGGCATTCCCCGATTGCGCCGCATTCTGAGGGGCATCGCGTGGCTTTT
TCCTGACATTGGCTACTGTCAGGGCACCGGAGTGATCGTTGCCTGTCTGC
TTCTCTTCATGGAGGAGGAGAACGCCTTTTGGATGATGGCCACCATTGTA
GAGGATCTGCTGCCAGCTTCCTACTACAGCTCAACTCTTCTGGGAATTCA
AGCCGACCAACGCGTGATGCACACGCTTATTGCCAACTACCTGAGCAGCG
T
BO08823.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:29:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12241-PA | 2415 | CG12241-RA | 1..935 | 17..951 | 4675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:31:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12241-RA | 2986 | CG12241-RA | 155..1090 | 16..951 | 4680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:31:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15219545..15220068 | 82..605 | 2620 | 100 | Plus |
3R | 32079331 | 3R | 15220128..15220475 | 604..951 | 1740 | 100 | Plus |
3R | 32079331 | 3R | 15219410..15219476 | 16..82 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:31:29 has no hits.
BO08823.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:54:29 Download gff for
BO08823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12241-PA | 1..935 | 17..951 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:52:01 Download gff for
BO08823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12241-PA | 1..935 | 17..951 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:40:53 Download gff for
BO08823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12241-RA | 146..1090 | 9..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:07 Download gff for
BO08823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12241-RA | 146..1090 | 9..951 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:07 Download gff for
BO08823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15219401..15219476 | 9..82 | 94 | -> | Plus |
3R | 15219546..15220068 | 83..605 | 100 | -> | Plus |
3R | 15220130..15220475 | 606..951 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:40:53 Download gff for
BO08823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11045123..11045198 | 9..82 | 94 | -> | Plus |
arm_3R | 11045268..11045790 | 83..605 | 100 | -> | Plus |
arm_3R | 11045852..11046197 | 606..951 | 100 | | Plus |
BO08823.complete Sequence
2446 bp (2446 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ638660
> BO08823.complete
GAAGTTATCAGTCGACATGGACATGGCCAGGAGCATTTTTGGCCGCGACC
ATGAGGGTTACGTGGGCCGTGAAGAGCATACGCGCAAACTGCAGAACCTG
GGCTCGGAAGACGATCTGGGAGAGCTGCCGCCTATGATGGAGGAACTAAG
TGTGGCCGATGGCCTGCGACCAAATCCCGGTGGGCCATTCTCCGCTCTTA
CCGCCTCCATGTGGCCACAGGAAATCCTAGCCAAGCTGGGCGGTGGCGCG
GAATTGGCTTCCGGCCCAAACGACCAGCCGGAGTACCGTTTTGACGAATT
TGGCTTCCGGGTGGAGGAGGAGGACGGTCCGGAGCAGAGCTCCAACAAAT
TGCTGAGCATACCCTTTGTAGAGGACGCGCAGCAGCGATTGCAGTGGATC
GCCCACCTGGAGTTCTCACACAACAAGGAGGCTGCCGAGCTGAGCTGGGA
GCATGTGGATGTAATGCTCCCACGCACAGAAAAGCTGCGCAATATGGTCC
GTCAGGGTATCCCGCACACGTTGCGTGCCCAGATGTGGATGCGTCTATCA
GGAGCGTTGGCCAAGAAGCAAAAGAGCGAGACCAGCTACCACGATATAGT
TAAAGCTTCTAGCAATGACCAGCTGATGACTTCGAAGCAGATCGAGAAGG
ACCTTTTGCGCATCCTGCCAACAAATGCCTGCTTTAGCAATCCGAATGGG
ACAGGCATTCCCCGATTGCGCCGCATTCTGAGGGGCATCGCGTGGCTTTT
TCCTGACATTGGCTACTGTCAGGGCACCGGAGTGATCGTTGCCTGTCTGC
TTCTCTTCATGGAGGAGGAGAACGCCTTTTGGATGATGGCCACCATTGTA
GAGGATCTGCTGCCAGCTTCCTACTACAGCTCAACTCTTCTGGGAATTCA
AGCCGACCAACGCGTGATGCACACGCTTATTGCCAACTACCTGAGCAGCG
TGGACGAGTCCTTGCGTAAGCACGACATCGAGCTGTCTTTAATCACGCTG
CATTGGTTCCTCACGCTTTTTGCCAACGTGGTGCATATGAAGATTCTTGT
GCGTATCTGGGACTGGTTCTTTTACGAGGGCTCCATCGTGCTGTTCCAGT
TGACTCTGGGCATGCTCAAGGTGAAGGAGCAAGATCTAAAGCATCTCGAG
AACTCAGCACAGATTTTCAATTCACTGTCCGACATTCCCGGCGAGGTCAC
TGATGTCGAAGTGCTCTTTCGCCAAGCCCTGGAGGTGGGCGGATCACTTA
GCCAGACGGTAATCGATACCCATCGTCGTCGTCACCTGGCCTATCTCATG
GCGGATCAAGGACATCAGATAGGAAATCCCGAGGCTGCGCCTAATCTTCC
CAAACAACAGCTAGCCCGACGGCAGGTGCGCAAAAGCAAATCCATCCTGG
AAGCCTTTCTCTTCCGCGGCGACGGCAACGAAGGGGATCAGCTGAAGAAC
AAGAATATACGCCAGACGGAGATCCTGGTAGACTTAAGAGAGGCTATCCT
TAAAGTGGGTCGTCATTTCATCACCATTGAACCCAAGCTTGCCGGTCACA
TCCAGCTGACGGCCAACTACAGCACCGAGTCGCATGCCAAGGACCACGAA
AACTTTATCAATGTGGCAAGGACGCGAAAGCGAAGGGCTAAAGCCCTGCA
CGACTTTGAGCGGCACGACGACGATGAGTTGGGATTTCGGCGGAACGACA
TCATAACAATCATCAGTCAAAAAGACGAACACTGCTGGGTGGGAGAACTG
AACGGCCTGCGCGGCTGGTTTCCAGCCAAGTTCGTGGAGCTGCTCGACGA
GCGGAGCAAGTTGTACACATCAGCCGGAGATGATGCCATTTCGGAAACTG
TAACGGACCTGGTGCGTGGCACCTTGGCGCCGGCCATCAAGGCCTTTCTG
GAGCACGGCATGAAACGGCCCACGTTTCTGGGTGGACCAATACACCCCTG
GCTGTATATTGAGGAGGCTGCCACCCGGGAGGTGGAGAAGGATTTTGAGT
CGGTGTACAGCCGTCTTGTGCTCTGCAAAACGTATCGACTGGATGAGGAT
GGCAAGGTACTAACGCCCGAGGAGCTACTCTATCGCTGCGTTCAGGCCAT
CAATCAGACGCACGATGATGCGCACGCACAAATGGATGTTAAGTTACGCT
CGCTGATCTGTTTGGGCCTCAACGAACAGGTTCTTCACCTCTGGTTGGAG
GTGCTGTGCGCCTGCCAGGAGGTCGTACAGAAGTGGTATCATTCCTGGAG
CTTTATTGACTCACCCGGTTGGGTGCAGATCAAGTGCGAGCTGCGCATTC
TCTCGCAGTTCGCCTTCAATCTGAACCCCGACTGGGAACTGCCGCCGAAG
CGCGGCAAGGAGTCGCAACCGCTCAAGGACGGAGTAAGGGACATGCTGGT
GAAGCACCATCTCTTCTCATGGGATCTGGCAAGCTTTCTAGACCAT
BO08823.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:55:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12241-RA | 2415 | CG12241-PA | 1..2412 | 17..2428 | 12060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:55:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12241-RA | 2986 | CG12241-RA | 155..2567 | 16..2428 | 12065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:55:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15220128..15221952 | 604..2428 | 9125 | 100 | Plus |
3R | 32079331 | 3R | 15219545..15220068 | 82..605 | 2620 | 100 | Plus |
3R | 32079331 | 3R | 15219410..15219476 | 16..82 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:55:39 has no hits.
BO08823.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:06 Download gff for
BO08823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12241-RA | 1..2415 | 17..2431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:25 Download gff for
BO08823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12241-RA | 140..2572 | 9..2439 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:02 Download gff for
BO08823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12241-RA | 156..2567 | 17..2430 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:07 Download gff for
BO08823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12241-RA | 140..2572 | 9..2439 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:05 Download gff for
BO08823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12241-RA | 156..2567 | 17..2430 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:05 Download gff for
BO08823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15219411..15219476 | 17..82 | 100 | -> | Plus |
3R | 15219546..15220068 | 83..605 | 100 | -> | Plus |
3R | 15220130..15221952 | 606..2430 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:02 Download gff for
BO08823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11045133..11045198 | 17..82 | 100 | -> | Plus |
arm_3R | 11045268..11045790 | 83..605 | 100 | -> | Plus |
arm_3R | 11045852..11047674 | 606..2430 | 99 | | Plus |
BO08823.pep Sequence
Translation from 16 to 2446
> BO08823.pep
MDMARSIFGRDHEGYVGREEHTRKLQNLGSEDDLGELPPMMEELSVADGL
RPNPGGPFSALTASMWPQEILAKLGGGAELASGPNDQPEYRFDEFGFRVE
EEDGPEQSSNKLLSIPFVEDAQQRLQWIAHLEFSHNKEAAELSWEHVDVM
LPRTEKLRNMVRQGIPHTLRAQMWMRLSGALAKKQKSETSYHDIVKASSN
DQLMTSKQIEKDLLRILPTNACFSNPNGTGIPRLRRILRGIAWLFPDIGY
CQGTGVIVACLLLFMEEENAFWMMATIVEDLLPASYYSSTLLGIQADQRV
MHTLIANYLSSVDESLRKHDIELSLITLHWFLTLFANVVHMKILVRIWDW
FFYEGSIVLFQLTLGMLKVKEQDLKHLENSAQIFNSLSDIPGEVTDVEVL
FRQALEVGGSLSQTVIDTHRRRHLAYLMADQGHQIGNPEAAPNLPKQQLA
RRQVRKSKSILEAFLFRGDGNEGDQLKNKNIRQTEILVDLREAILKVGRH
FITIEPKLAGHIQLTANYSTESHAKDHENFINVARTRKRRAKALHDFERH
DDDELGFRRNDIITIISQKDEHCWVGELNGLRGWFPAKFVELLDERSKLY
TSAGDDAISETVTDLVRGTLAPAIKAFLEHGMKRPTFLGGPIHPWLYIEE
AATREVEKDFESVYSRLVLCKTYRLDEDGKVLTPEELLYRCVQAINQTHD
DAHAQMDVKLRSLICLGLNEQVLHLWLEVLCACQEVVQKWYHSWSFIDSP
GWVQIKCELRILSQFAFNLNPDWELPPKRGKESQPLKDGVRDMLVKHHLF
SWDLASFLDH
BO08823.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:18:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12241-PA | 804 | CG12241-PA | 1..804 | 1..804 | 4227 | 100 | Plus |
CG7324-PB | 1256 | CG7324-PB | 451..663 | 153..368 | 382 | 35.9 | Plus |
CG7324-PA | 1291 | CG7324-PA | 451..663 | 153..368 | 382 | 35.9 | Plus |
CG5916-PB | 330 | CG5916-PB | 62..290 | 156..389 | 288 | 29.8 | Plus |
CG5916-PA | 330 | CG5916-PA | 62..290 | 156..389 | 288 | 29.8 | Plus |