Clone BO08823 Report

Search the DGRC for BO08823

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:88
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptCG12241-RA
Protein status:BO08823.pep: validated full length
Sequenced Size:2446

Clone Sequence Records

BO08823.3prime Sequence

910 bp (787 high quality bases) assembled on 2006-01-09

> BO08823.3prime
ATGGTCTAGAAAGCTTGCCAGATCCCATGAGAAGAGATGGTGCTTCACCA
GCATGTCCCTTACTCCGTCCTTGAGCGGTTGCGACTCCTTGCCGCGCTTC
GGCGGCAGTTCCCAGTCGGGGTTCAGATTGAAGGCGAACTGCGAGAGAAT
GCGCAGCTCGCACTTGATCTGCACCCAACCGGGTGAGTCAATAAAGCTCC
AGGAATGATACCACTTCTGTACGACCTCCTGGCAGGCGCACAGCACCTCC
AACCAGAGGTGAAGAACCTGTTCGTTGAGGCCCAAACAGATCAGCGAGCG
TAACTTAACATCCATTTGTGCGTGCGCATCATCGTGCGTCTGATTGATGG
CCTGAACGCAGCGATAGAGTAGCTCCTCGGGCGTTAGTACCTTGCCATCC
TCATCCAGTCGATACGTTTTGCAGAGCACAAGACGGCTGTACACCGACTC
AAAATCCTTCTCCACCTCCCGGGTGGCAGCCTCCTCAATATACAGCCAGG
GGTGTATTGGTCCACCCAGAAACGTGGGCCGTTTCATGCCGTGCTCCAGA
AAGGCCTTGATGGCCGGCGCCAAGGTGCCACGCACCAGGTCCGTTACAGT
TTCCGAAATGGCATCATCTCCGGCTGATGTGTACAACTTGCTCCGCTCGT
CGAGCAGCTCCACGAACTTGGCTGGAAACCAGCCGCGCAGGCCGTTCAGT
TCTCCCACCCAGCAGTGTTCGTCTTTTTGACTGATGATTGTTATGATGTC
GTTCCGCCGAAATCCCAACTCATCGTCGTCGTGCCGCTCAAAGTCGTGCA
GGGCTTTAGCCCTTCGCTTTCGCGTCCTTGCCACATTGATAAAGTTTTCG
TGGTCCTTGGCATGCGACTCGGTGCTGTAGTTGGCCGTCAGCTGGATGTG
ACCGGCAAGC

BO08823.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:29:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG12241-PA 2415 CG12241-RA 1521..2412 910..19 4460 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG12241-RA 2986 CG12241-RA 1676..2567 910..19 4460 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15221061..15221952 910..19 4460 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:37:33 has no hits.

BO08823.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:54:28 Download gff for BO08823.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12241-PA 1521..2415 16..910 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:52:00 Download gff for BO08823.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12241-PA 1521..2415 16..910 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:29:09 Download gff for BO08823.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12241-RA 1676..2578 8..910 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:15 Download gff for BO08823.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12241-RA 1676..2578 8..910 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:15 Download gff for BO08823.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15221061..15221963 8..910 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:29:09 Download gff for BO08823.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11046783..11047685 8..910 99   Minus

BO08823.5prime Sequence

951 bp (769 high quality bases) assembled on 2006-01-09

> BO08823.5prime
GAAGTTATCAGTCGACATGGACATGGCCAGGAGCATTTTTGGCCGCGACC
ATGAGGGTTACGTGGGCCGTGAAGAGCATACGCGCAAACTGCAGAACCTG
GGCTCGGAAGACGATCTGGGAGAGCTGCCGCCTATGATGGAGGAACTAAG
TGTGGCCGATGGCCTGCGACCAAATCCCGGTGGGCCATTCTCCGCTCTTA
CCGCCTCCATGTGGCCACAGGAAATCCTAGCCAAGCTGGGCGGTGGCGCG
GAATTGGCTTCCGGCCCAAACGACCAGCCGGAGTACCGTTTTGACGAATT
TGGCTTCCGGGTGGAGGAGGAGGACGGTCCGGAGCAGAGCTCCAACAAAT
TGCTGAGCATACCCTTTGTAGAGGACGCGCAGCAGCGATTGCAGTGGATC
GCCCACCTGGAGTTCTCACACAACAAGGAGGCTGCCGAGCTGAGCTGGGA
GCATGTGGATGTAATGCTCCCACGCACAGAAAAGCTGCGCAATATGGTCC
GTCAGGGTATCCCGCACACGTTGCGTGCCCAGATGTGGATGCGTCTATCA
GGAGCGTTGGCCAAGAAGCAAAAGAGCGAGACCAGCTACCACGATATAGT
TAAAGCTTCTAGCAATGACCAGCTGATGACTTCGAAGCAGATCGAGAAGG
ACCTTTTGCGCATCCTGCCAACAAATGCCTGCTTTAGCAATCCGAATGGG
ACAGGCATTCCCCGATTGCGCCGCATTCTGAGGGGCATCGCGTGGCTTTT
TCCTGACATTGGCTACTGTCAGGGCACCGGAGTGATCGTTGCCTGTCTGC
TTCTCTTCATGGAGGAGGAGAACGCCTTTTGGATGATGGCCACCATTGTA
GAGGATCTGCTGCCAGCTTCCTACTACAGCTCAACTCTTCTGGGAATTCA
AGCCGACCAACGCGTGATGCACACGCTTATTGCCAACTACCTGAGCAGCG
T

BO08823.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:29:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG12241-PA 2415 CG12241-RA 1..935 17..951 4675 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:31:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG12241-RA 2986 CG12241-RA 155..1090 16..951 4680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:31:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15219545..15220068 82..605 2620 100 Plus
3R 32079331 3R 15220128..15220475 604..951 1740 100 Plus
3R 32079331 3R 15219410..15219476 16..82 335 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:31:29 has no hits.

BO08823.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:54:29 Download gff for BO08823.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12241-PA 1..935 17..951 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:52:01 Download gff for BO08823.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12241-PA 1..935 17..951 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:40:53 Download gff for BO08823.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12241-RA 146..1090 9..951 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:07 Download gff for BO08823.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12241-RA 146..1090 9..951 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:07 Download gff for BO08823.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15219401..15219476 9..82 94 -> Plus
3R 15219546..15220068 83..605 100 -> Plus
3R 15220130..15220475 606..951 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:40:53 Download gff for BO08823.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11045123..11045198 9..82 94 -> Plus
arm_3R 11045268..11045790 83..605 100 -> Plus
arm_3R 11045852..11046197 606..951 100   Plus

BO08823.complete Sequence

2446 bp (2446 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ638660

> BO08823.complete
GAAGTTATCAGTCGACATGGACATGGCCAGGAGCATTTTTGGCCGCGACC
ATGAGGGTTACGTGGGCCGTGAAGAGCATACGCGCAAACTGCAGAACCTG
GGCTCGGAAGACGATCTGGGAGAGCTGCCGCCTATGATGGAGGAACTAAG
TGTGGCCGATGGCCTGCGACCAAATCCCGGTGGGCCATTCTCCGCTCTTA
CCGCCTCCATGTGGCCACAGGAAATCCTAGCCAAGCTGGGCGGTGGCGCG
GAATTGGCTTCCGGCCCAAACGACCAGCCGGAGTACCGTTTTGACGAATT
TGGCTTCCGGGTGGAGGAGGAGGACGGTCCGGAGCAGAGCTCCAACAAAT
TGCTGAGCATACCCTTTGTAGAGGACGCGCAGCAGCGATTGCAGTGGATC
GCCCACCTGGAGTTCTCACACAACAAGGAGGCTGCCGAGCTGAGCTGGGA
GCATGTGGATGTAATGCTCCCACGCACAGAAAAGCTGCGCAATATGGTCC
GTCAGGGTATCCCGCACACGTTGCGTGCCCAGATGTGGATGCGTCTATCA
GGAGCGTTGGCCAAGAAGCAAAAGAGCGAGACCAGCTACCACGATATAGT
TAAAGCTTCTAGCAATGACCAGCTGATGACTTCGAAGCAGATCGAGAAGG
ACCTTTTGCGCATCCTGCCAACAAATGCCTGCTTTAGCAATCCGAATGGG
ACAGGCATTCCCCGATTGCGCCGCATTCTGAGGGGCATCGCGTGGCTTTT
TCCTGACATTGGCTACTGTCAGGGCACCGGAGTGATCGTTGCCTGTCTGC
TTCTCTTCATGGAGGAGGAGAACGCCTTTTGGATGATGGCCACCATTGTA
GAGGATCTGCTGCCAGCTTCCTACTACAGCTCAACTCTTCTGGGAATTCA
AGCCGACCAACGCGTGATGCACACGCTTATTGCCAACTACCTGAGCAGCG
TGGACGAGTCCTTGCGTAAGCACGACATCGAGCTGTCTTTAATCACGCTG
CATTGGTTCCTCACGCTTTTTGCCAACGTGGTGCATATGAAGATTCTTGT
GCGTATCTGGGACTGGTTCTTTTACGAGGGCTCCATCGTGCTGTTCCAGT
TGACTCTGGGCATGCTCAAGGTGAAGGAGCAAGATCTAAAGCATCTCGAG
AACTCAGCACAGATTTTCAATTCACTGTCCGACATTCCCGGCGAGGTCAC
TGATGTCGAAGTGCTCTTTCGCCAAGCCCTGGAGGTGGGCGGATCACTTA
GCCAGACGGTAATCGATACCCATCGTCGTCGTCACCTGGCCTATCTCATG
GCGGATCAAGGACATCAGATAGGAAATCCCGAGGCTGCGCCTAATCTTCC
CAAACAACAGCTAGCCCGACGGCAGGTGCGCAAAAGCAAATCCATCCTGG
AAGCCTTTCTCTTCCGCGGCGACGGCAACGAAGGGGATCAGCTGAAGAAC
AAGAATATACGCCAGACGGAGATCCTGGTAGACTTAAGAGAGGCTATCCT
TAAAGTGGGTCGTCATTTCATCACCATTGAACCCAAGCTTGCCGGTCACA
TCCAGCTGACGGCCAACTACAGCACCGAGTCGCATGCCAAGGACCACGAA
AACTTTATCAATGTGGCAAGGACGCGAAAGCGAAGGGCTAAAGCCCTGCA
CGACTTTGAGCGGCACGACGACGATGAGTTGGGATTTCGGCGGAACGACA
TCATAACAATCATCAGTCAAAAAGACGAACACTGCTGGGTGGGAGAACTG
AACGGCCTGCGCGGCTGGTTTCCAGCCAAGTTCGTGGAGCTGCTCGACGA
GCGGAGCAAGTTGTACACATCAGCCGGAGATGATGCCATTTCGGAAACTG
TAACGGACCTGGTGCGTGGCACCTTGGCGCCGGCCATCAAGGCCTTTCTG
GAGCACGGCATGAAACGGCCCACGTTTCTGGGTGGACCAATACACCCCTG
GCTGTATATTGAGGAGGCTGCCACCCGGGAGGTGGAGAAGGATTTTGAGT
CGGTGTACAGCCGTCTTGTGCTCTGCAAAACGTATCGACTGGATGAGGAT
GGCAAGGTACTAACGCCCGAGGAGCTACTCTATCGCTGCGTTCAGGCCAT
CAATCAGACGCACGATGATGCGCACGCACAAATGGATGTTAAGTTACGCT
CGCTGATCTGTTTGGGCCTCAACGAACAGGTTCTTCACCTCTGGTTGGAG
GTGCTGTGCGCCTGCCAGGAGGTCGTACAGAAGTGGTATCATTCCTGGAG
CTTTATTGACTCACCCGGTTGGGTGCAGATCAAGTGCGAGCTGCGCATTC
TCTCGCAGTTCGCCTTCAATCTGAACCCCGACTGGGAACTGCCGCCGAAG
CGCGGCAAGGAGTCGCAACCGCTCAAGGACGGAGTAAGGGACATGCTGGT
GAAGCACCATCTCTTCTCATGGGATCTGGCAAGCTTTCTAGACCAT

BO08823.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:55:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG12241-RA 2415 CG12241-PA 1..2412 17..2428 12060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:55:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG12241-RA 2986 CG12241-RA 155..2567 16..2428 12065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:55:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15220128..15221952 604..2428 9125 100 Plus
3R 32079331 3R 15219545..15220068 82..605 2620 100 Plus
3R 32079331 3R 15219410..15219476 16..82 335 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:55:39 has no hits.

BO08823.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:06 Download gff for BO08823.complete
Subject Subject Range Query Range Percent Splice Strand
CG12241-RA 1..2415 17..2431 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:25 Download gff for BO08823.complete
Subject Subject Range Query Range Percent Splice Strand
CG12241-RA 140..2572 9..2439 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:02 Download gff for BO08823.complete
Subject Subject Range Query Range Percent Splice Strand
CG12241-RA 156..2567 17..2430 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:07 Download gff for BO08823.complete
Subject Subject Range Query Range Percent Splice Strand
CG12241-RA 140..2572 9..2439 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:05 Download gff for BO08823.complete
Subject Subject Range Query Range Percent Splice Strand
CG12241-RA 156..2567 17..2430 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:05 Download gff for BO08823.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15219411..15219476 17..82 100 -> Plus
3R 15219546..15220068 83..605 100 -> Plus
3R 15220130..15221952 606..2430 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:02 Download gff for BO08823.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11045133..11045198 17..82 100 -> Plus
arm_3R 11045268..11045790 83..605 100 -> Plus
arm_3R 11045852..11047674 606..2430 99   Plus

BO08823.pep Sequence

Translation from 16 to 2446

> BO08823.pep
MDMARSIFGRDHEGYVGREEHTRKLQNLGSEDDLGELPPMMEELSVADGL
RPNPGGPFSALTASMWPQEILAKLGGGAELASGPNDQPEYRFDEFGFRVE
EEDGPEQSSNKLLSIPFVEDAQQRLQWIAHLEFSHNKEAAELSWEHVDVM
LPRTEKLRNMVRQGIPHTLRAQMWMRLSGALAKKQKSETSYHDIVKASSN
DQLMTSKQIEKDLLRILPTNACFSNPNGTGIPRLRRILRGIAWLFPDIGY
CQGTGVIVACLLLFMEEENAFWMMATIVEDLLPASYYSSTLLGIQADQRV
MHTLIANYLSSVDESLRKHDIELSLITLHWFLTLFANVVHMKILVRIWDW
FFYEGSIVLFQLTLGMLKVKEQDLKHLENSAQIFNSLSDIPGEVTDVEVL
FRQALEVGGSLSQTVIDTHRRRHLAYLMADQGHQIGNPEAAPNLPKQQLA
RRQVRKSKSILEAFLFRGDGNEGDQLKNKNIRQTEILVDLREAILKVGRH
FITIEPKLAGHIQLTANYSTESHAKDHENFINVARTRKRRAKALHDFERH
DDDELGFRRNDIITIISQKDEHCWVGELNGLRGWFPAKFVELLDERSKLY
TSAGDDAISETVTDLVRGTLAPAIKAFLEHGMKRPTFLGGPIHPWLYIEE
AATREVEKDFESVYSRLVLCKTYRLDEDGKVLTPEELLYRCVQAINQTHD
DAHAQMDVKLRSLICLGLNEQVLHLWLEVLCACQEVVQKWYHSWSFIDSP
GWVQIKCELRILSQFAFNLNPDWELPPKRGKESQPLKDGVRDMLVKHHLF
SWDLASFLDH

BO08823.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:18:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG12241-PA 804 CG12241-PA 1..804 1..804 4227 100 Plus
CG7324-PB 1256 CG7324-PB 451..663 153..368 382 35.9 Plus
CG7324-PA 1291 CG7324-PA 451..663 153..368 382 35.9 Plus
CG5916-PB 330 CG5916-PB 62..290 156..389 288 29.8 Plus
CG5916-PA 330 CG5916-PA 62..290 156..389 288 29.8 Plus