Clone Sequence Records
BO08826.3prime Sequence
871 bp (843 high quality bases) assembled on 2006-01-09
> BO08826.3prime
ATGGTCTAGAAAGCTTGCCCTGCCTGCGCCCGCACCCAACAGCAGGGCAT
AATCATCGTTGGACTCGGGAATTGGCGCCGCTGCCGACGCGGCACCAGGG
GGCAGGCGCAGGAAACTGCCACCGCCGCCAGCACCCGCACCCGGATCCCT
TTCGCGCTCGCGAAGATGCAGTGTGTCGCGTTGACGGGTCGACGGCTGAG
AGCCTGCCGCTCCCGGCAAGTGTAGTTGTTGTTGTTGGTAGTTGCTATTG
CTACTGTTCCCATCGTCGGCCACGCCTGCTGATTGTGACGAGTTGCCCGG
CAGCTGCTGATCTTGCCGCTTGCTGATCAGATACTCGGACTCACTGCTGG
AGCGGCGAGGACTGCGCGCCAGCGGCTGGTATGTGCTGCGTCCCTGGAAG
CGACGACTCAGTGAACTGCCCACGACGCCCAGATGCTCGGTGACATCCTC
CTGCATGTCGGATATGTCCATCATGGAGAGGAAGGCGCGACACCAGCTAT
GGTTCGGGTTGTTCCAGTACTGCGGCGAGTTGATGTGAAACGGATGGTGC
GGGAAGCTGTAGATGTGAGCCACGGCCGCGATAAACATTTCGATGCAGAT
GAGGAAATTCTGAAGCAGGGAAGCCAGATTGGTGTCTCCCACATCCGACC
CAAAGATGTCCTTAATAATATTATAGTATACCAGTACGTTGAGTAGCACT
CCTTGGAAAAACGAGAAAAACACCACAGCCTTGATGCACAGGAATTTGGG
AATAGGCTTCATTGGTTTGAGATCCTCCTTGTTTGCACGGTAAAATAGCA
CCAGGCAATACATGGCCACGAACTGGGATATATTGTTGACCACCACAATA
TAGGGGAAAGGCACGTTGCCC
BO08826.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5850-PA | 1476 | CG5850-RA | 621..1473 | 871..19 | 4215 | 99.7 | Minus |
CG5850-PB | 1710 | CG5850-RB | 621..1472 | 871..20 | 4210 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5850-RG | 2744 | CG5850-RG | 984..1836 | 871..19 | 4235 | 99.8 | Minus |
CG5850-RD | 3946 | CG5850-RD | 984..1836 | 871..19 | 4235 | 99.8 | Minus |
CG5850-RA | 2744 | CG5850-RA | 984..1836 | 871..19 | 4235 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9961729..9962062 | 279..612 | 1670 | 100 | Plus |
2L | 23513712 | 2L | 9961358..9961619 | 19..280 | 1310 | 100 | Plus |
2L | 23513712 | 2L | 9962471..9962635 | 707..871 | 795 | 98.8 | Plus |
2L | 23513712 | 2L | 9962318..9962414 | 610..706 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:45:55 has no hits.
BO08826.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:54:34 Download gff for
BO08826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5850-PA | 621..1476 | 16..871 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:52:08 Download gff for
BO08826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5850-PA | 621..1476 | 16..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:02:15 Download gff for
BO08826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5850-RA | 984..1846 | 12..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:08:59 Download gff for
BO08826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5850-RA | 984..1846 | 12..871 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:08:59 Download gff for
BO08826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9961348..9961617 | 12..278 | 98 | <- | Plus |
2L | 9961729..9962059 | 279..609 | 100 | <- | Plus |
2L | 9962318..9962414 | 610..706 | 100 | <- | Plus |
2L | 9962471..9962635 | 707..871 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:02:15 Download gff for
BO08826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9961348..9961617 | 12..278 | 98 | <- | Plus |
arm_2L | 9961729..9962059 | 279..609 | 100 | <- | Plus |
arm_2L | 9962318..9962414 | 610..706 | 100 | <- | Plus |
arm_2L | 9962471..9962635 | 707..871 | 98 | | Plus |
BO08826.5prime Sequence
979 bp (773 high quality bases) assembled on 2006-01-09
> BO08826.5prime
GAAGTTATCAGTCGACATGTGCAGCTTGGACGTAAGACGCTTCTTCGAGG
AGTGGCGCATCTGGATACGCCCGCTGCTCATTATCACCTATGTCATCTTC
GCCATCATCGTGGTCCCGCTGCTCATTGTGAACTCCGTGAAGGATGGCTT
CCAGCGCAATGACCAGCTCATTCTCATCGGCGGTCTGTTTGTGTTGTCCG
CAGTGCCCGTGTCCATTTGGCATATCATCCAACACGTCATTCATTTTACC
AAGCCCATACTGCAGAAGCACATAATCCGCATATTGTGGATGGTGCCTAT
CTACGCCTTGAACGCGTGGATCGGCCTTTTCTTTCCGAAGCACTCCATCT
ACGTGGACTCACTGCGCGAGTGCTACGAGGCGTACGTTATCTACAACTTC
ATGGTGTACCTGCTCAACTACTTGAATCTCGGTATGGACCTAGAGGCCAC
AATGGAGTACAAGCCGCAGGTGCCTCACTTCTTTCCGCTCTGCTGCATGC
GGCCGTGGGTGATGGGTCGTGAATTCATCCACAACTGCAAGCACGGCATC
CTCCAGTACACGGTCGTGCGCCCCATTACCACCTTTATCTCTGTCATCTG
CGAGCTATGCGGCGTTTACGGCGAGGGCGAGTTTGCGGGCAACGTGGCCT
TCCCCTATATTGTGGTGGTCAACAATATATCCCAGTTCGTGGCCATGTAT
TGCCTGGTGCTATTTTACCGTGCAAACAAGGAGGATCTCAAACCAATGAA
GCCTATTCCCAAATTCCTGTGCATCAAGGCTGTGGTGTTTTTCTCGTTTT
TCCAAGGAGTGCTACTCAACGTACTGGTATACTATAATATTATTAAGGAC
ATCTTTGGGTCGGATGTGGGAGACACCAATCTGGCTTCCCTGCTTCAGAA
TTTCCTCATCTGCATCGAAATGTTTATCGCGGCCGTGGCTCACATCTACA
GCTTCCCGCACCATCCGTTTCACATCACT
BO08826.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5850-PB | 1710 | CG5850-RB | 1..961 | 17..977 | 4805 | 100 | Plus |
CG5850-PA | 1476 | CG5850-RA | 1..961 | 17..977 | 4805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:58:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5850-RC | 2935 | CG5850-RC | 558..1518 | 17..977 | 4805 | 100 | Plus |
CG5850-RG | 2744 | CG5850-RG | 364..1324 | 17..977 | 4805 | 100 | Plus |
CG5850-RF | 2678 | CG5850-RF | 364..1324 | 17..977 | 4805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:58:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9963093..9963392 | 316..17 | 1500 | 100 | Minus |
2L | 23513712 | 2L | 9962735..9963013 | 594..316 | 1395 | 100 | Minus |
2L | 23513712 | 2L | 9962471..9962677 | 801..595 | 1035 | 100 | Minus |
2L | 23513712 | 2L | 9962318..9962414 | 898..802 | 485 | 100 | Minus |
2L | 23513712 | 2L | 9961981..9962062 | 977..896 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:58:33 has no hits.
BO08826.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:54:35 Download gff for
BO08826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5850-PA | 1..964 | 17..979 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:52:10 Download gff for
BO08826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5850-PA | 1..964 | 17..979 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:30:25 Download gff for
BO08826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5850-RF | 356..1327 | 10..979 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:07:21 Download gff for
BO08826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5850-RF | 356..1327 | 10..979 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:07:21 Download gff for
BO08826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9962735..9963012 | 317..594 | 100 | <- | Minus |
2L | 9961978..9962059 | 899..979 | 98 | <- | Minus |
2L | 9962318..9962414 | 802..898 | 100 | <- | Minus |
2L | 9962471..9962677 | 595..801 | 100 | <- | Minus |
2L | 9963093..9963398 | 11..316 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:30:25 Download gff for
BO08826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9962471..9962677 | 595..801 | 100 | <- | Minus |
arm_2L | 9962735..9963012 | 317..594 | 100 | <- | Minus |
arm_2L | 9963093..9963398 | 11..316 | 98 | <- | Minus |
arm_2L | 9961978..9962059 | 899..979 | 98 | <- | Minus |
arm_2L | 9962318..9962414 | 802..898 | 100 | <- | Minus |
BO08826.complete Sequence
1507 bp (1507 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631283
> BO08826.complete
GAAGTTATCAGTCGACATGTGCAGCTTGGACGTAAGACGCTTCTTCGAGG
AGTGGCGCATCTGGATACGCCCGCTGCTCATTATCACCTATGTCATCTTC
GCCATCATCGTGGTCCCGCTGCTCATTGTGAACTCCGTGAAGGATGGCTT
CCAGCGCAATGACCAGCTCATTCTCATCGGCGGTCTGTTTGTGTTGTCCG
CAGTGCCCGTGTCCATTTGGCATATCATCCAACACGTCATTCATTTTACC
AAGCCCATACTGCAGAAGCACATAATCCGCATATTGTGGATGGTGCCTAT
CTACGCCTTGAACGCGTGGATCGGCCTTTTCTTTCCGAAGCACTCCATCT
ACGTGGACTCACTGCGCGAGTGCTACGAGGCGTACGTTATCTACAACTTC
ATGGTGTACCTGCTCAACTACTTGAATCTCGGTATGGACCTAGAGGCCAC
AATGGAGTACAAGCCGCAGGTGCCTCACTTCTTTCCGCTCTGCTGCATGC
GGCCGTGGGTGATGGGTCGTGAATTCATCCACAACTGCAAGCACGGCATC
CTCCAGTACACGGTCGTGCGCCCCATTACCACCTTTATCTCTGTCATCTG
CGAGCTATGCGGCGTTTACGGCGAGGGCGAGTTTGCGGGCAACGTGGCCT
TCCCCTATATTGTGGTGGTCAACAATATATCCCAGTTCGTGGCCATGTAT
TGCCTGGTGCTATTTTACCGTGCAAACAAGGAGGATCTCAAACCAATGAA
GCCTATTCCCAAATTCCTGTGCATCAAGGCTGTGGTGTTTTTCTCGTTTT
TCCAAGGAGTGCTACTCAACGTACTGGTATACTATAATATTATTAAGGAC
ATCTTTGGGTCGGATGTGGGAGACACCAATCTGGCTTCCCTGCTTCAGAA
TTTCCTCATCTGCATCGAAATGTTTATCGCGGCCGTGGCTCACATCTACA
GCTTCCCGCACCATCCGTTTCACATCAACTCGCCGCAGTACTGGAACAAC
CCGAACCATAGCTGGTGTCGCGCCTTCCTCTCCATGATGGACATATCCGA
CATGCAGGAGGATGTCACCGAGCATCTGGGCGTCGTGGGCAGTTCACTGA
GTCGTCGCTTCCAGGGACGCAGCACATACCAGCCGCTGGCGCGCAGTCCT
CGCCGCTCCAGCAGTGAGTCCGAGTATCTGATCAGCAAGCGGCAAGATCA
GCAGCTGCCGGGCAACTCGTCACAATCAGCAGGCGTGGCCGACGATGGGA
ACAGTAGCAATAGCAACTACCAACAACAACAACTACACTTGCCGGGAGCG
GCAGGCTCTCAGCCGTCGACCCGTCAACGCGACACACTGCATCTTCGCGA
GCGCGAAAGGGATCCGGGTGCGGGTGCTGGCGGCGGTGGCAGTTTCCTGC
GCCTGCCCCCTGGTGCCGCGTCGGCAGCGGCGCCAATTCCCGAGTCCAAC
GATGATTATGCCCTGCTGTTGGGTGCGGGCGCAGGCAGGGCAAGCTTTCT
AGACCAT
BO08826.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:49:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5850-RG | 1827 | CG5850-PG | 1..1473 | 17..1489 | 7365 | 100 | Plus |
CG5850-RD | 1476 | CG5850-PD | 1..1473 | 17..1489 | 7365 | 100 | Plus |
CG5850-RA | 1476 | CG5850-PA | 1..1473 | 17..1489 | 7365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:49:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5850-RG | 2744 | CG5850-RG | 364..1836 | 17..1489 | 7365 | 100 | Plus |
CG5850-RD | 3946 | CG5850-RD | 364..1836 | 17..1489 | 7365 | 100 | Plus |
CG5850-RA | 2744 | CG5850-RA | 364..1836 | 17..1489 | 7365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:49:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9961729..9962062 | 1229..896 | 1670 | 100 | Minus |
2L | 23513712 | 2L | 9963093..9963392 | 316..17 | 1500 | 100 | Minus |
2L | 23513712 | 2L | 9962735..9963013 | 594..316 | 1395 | 100 | Minus |
2L | 23513712 | 2L | 9961358..9961619 | 1489..1228 | 1310 | 100 | Minus |
2L | 23513712 | 2L | 9962471..9962677 | 801..595 | 1035 | 100 | Minus |
2L | 23513712 | 2L | 9962318..9962414 | 898..802 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:49:53 has no hits.
BO08826.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:58 Download gff for
BO08826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5850-RA | 1..1476 | 17..1492 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:30:14 Download gff for
BO08826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5850-RA | 370..1860 | 10..1496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:35 Download gff for
BO08826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5850-RA | 364..1836 | 17..1491 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:58 Download gff for
BO08826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5850-RA | 370..1860 | 10..1496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:05 Download gff for
BO08826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5850-RA | 364..1836 | 17..1491 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:05 Download gff for
BO08826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9962318..9962414 | 802..898 | 100 | <- | Minus |
2L | 9961354..9961617 | 1230..1491 | 99 | <- | Minus |
2L | 9962471..9962677 | 595..801 | 100 | <- | Minus |
2L | 9961729..9962059 | 899..1229 | 100 | <- | Minus |
2L | 9963093..9963392 | 17..316 | 100 | | Minus |
2L | 9962735..9963012 | 317..594 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:35 Download gff for
BO08826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9962471..9962677 | 595..801 | 100 | <- | Minus |
arm_2L | 9961354..9961617 | 1230..1491 | 99 | <- | Minus |
arm_2L | 9961729..9962059 | 899..1229 | 100 | <- | Minus |
arm_2L | 9962318..9962414 | 802..898 | 100 | <- | Minus |
arm_2L | 9962735..9963012 | 317..594 | 100 | <- | Minus |
arm_2L | 9963093..9963392 | 17..316 | 100 | | Minus |
BO08826.pep Sequence
Translation from 16 to 1507
> BO08826.pep
MCSLDVRRFFEEWRIWIRPLLIITYVIFAIIVVPLLIVNSVKDGFQRNDQ
LILIGGLFVLSAVPVSIWHIIQHVIHFTKPILQKHIIRILWMVPIYALNA
WIGLFFPKHSIYVDSLRECYEAYVIYNFMVYLLNYLNLGMDLEATMEYKP
QVPHFFPLCCMRPWVMGREFIHNCKHGILQYTVVRPITTFISVICELCGV
YGEGEFAGNVAFPYIVVVNNISQFVAMYCLVLFYRANKEDLKPMKPIPKF
LCIKAVVFFSFFQGVLLNVLVYYNIIKDIFGSDVGDTNLASLLQNFLICI
EMFIAAVAHIYSFPHHPFHINSPQYWNNPNHSWCRAFLSMMDISDMQEDV
TEHLGVVGSSLSRRFQGRSTYQPLARSPRRSSSESEYLISKRQDQQLPGN
SSQSAGVADDGNSSNSNYQQQQLHLPGAAGSQPSTRQRDTLHLRERERDP
GAGAGGGGSFLRLPPGAASAAAPIPESNDDYALLLGAGAGRASFLDH
BO08826.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5850-PG | 608 | CG5850-PG | 1..491 | 1..491 | 2607 | 100 | Plus |
CG5850-PD | 491 | CG5850-PD | 1..491 | 1..491 | 2607 | 100 | Plus |
CG5850-PA | 491 | CG5850-PA | 1..491 | 1..491 | 2607 | 100 | Plus |
CG5850-PC | 490 | CG5850-PC | 1..490 | 1..491 | 2591 | 99.8 | Plus |
CG5850-PF | 469 | CG5850-PF | 1..469 | 1..491 | 2463 | 95.3 | Plus |