Clone BO08826 Report

Search the DGRC for BO08826

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:88
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptCG5850-RA
Protein status:BO08826.pep: validated full length
Sequenced Size:1507

Clone Sequence Records

BO08826.3prime Sequence

871 bp (843 high quality bases) assembled on 2006-01-09

> BO08826.3prime
ATGGTCTAGAAAGCTTGCCCTGCCTGCGCCCGCACCCAACAGCAGGGCAT
AATCATCGTTGGACTCGGGAATTGGCGCCGCTGCCGACGCGGCACCAGGG
GGCAGGCGCAGGAAACTGCCACCGCCGCCAGCACCCGCACCCGGATCCCT
TTCGCGCTCGCGAAGATGCAGTGTGTCGCGTTGACGGGTCGACGGCTGAG
AGCCTGCCGCTCCCGGCAAGTGTAGTTGTTGTTGTTGGTAGTTGCTATTG
CTACTGTTCCCATCGTCGGCCACGCCTGCTGATTGTGACGAGTTGCCCGG
CAGCTGCTGATCTTGCCGCTTGCTGATCAGATACTCGGACTCACTGCTGG
AGCGGCGAGGACTGCGCGCCAGCGGCTGGTATGTGCTGCGTCCCTGGAAG
CGACGACTCAGTGAACTGCCCACGACGCCCAGATGCTCGGTGACATCCTC
CTGCATGTCGGATATGTCCATCATGGAGAGGAAGGCGCGACACCAGCTAT
GGTTCGGGTTGTTCCAGTACTGCGGCGAGTTGATGTGAAACGGATGGTGC
GGGAAGCTGTAGATGTGAGCCACGGCCGCGATAAACATTTCGATGCAGAT
GAGGAAATTCTGAAGCAGGGAAGCCAGATTGGTGTCTCCCACATCCGACC
CAAAGATGTCCTTAATAATATTATAGTATACCAGTACGTTGAGTAGCACT
CCTTGGAAAAACGAGAAAAACACCACAGCCTTGATGCACAGGAATTTGGG
AATAGGCTTCATTGGTTTGAGATCCTCCTTGTTTGCACGGTAAAATAGCA
CCAGGCAATACATGGCCACGAACTGGGATATATTGTTGACCACCACAATA
TAGGGGAAAGGCACGTTGCCC

BO08826.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5850-PA 1476 CG5850-RA 621..1473 871..19 4215 99.7 Minus
CG5850-PB 1710 CG5850-RB 621..1472 871..20 4210 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5850-RG 2744 CG5850-RG 984..1836 871..19 4235 99.8 Minus
CG5850-RD 3946 CG5850-RD 984..1836 871..19 4235 99.8 Minus
CG5850-RA 2744 CG5850-RA 984..1836 871..19 4235 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9961729..9962062 279..612 1670 100 Plus
2L 23513712 2L 9961358..9961619 19..280 1310 100 Plus
2L 23513712 2L 9962471..9962635 707..871 795 98.8 Plus
2L 23513712 2L 9962318..9962414 610..706 485 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:45:55 has no hits.

BO08826.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:54:34 Download gff for BO08826.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5850-PA 621..1476 16..871 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:52:08 Download gff for BO08826.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5850-PA 621..1476 16..871 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:02:15 Download gff for BO08826.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5850-RA 984..1846 12..871 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:08:59 Download gff for BO08826.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5850-RA 984..1846 12..871 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:08:59 Download gff for BO08826.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9961348..9961617 12..278 98 <- Plus
2L 9961729..9962059 279..609 100 <- Plus
2L 9962318..9962414 610..706 100 <- Plus
2L 9962471..9962635 707..871 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:02:15 Download gff for BO08826.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9961348..9961617 12..278 98 <- Plus
arm_2L 9961729..9962059 279..609 100 <- Plus
arm_2L 9962318..9962414 610..706 100 <- Plus
arm_2L 9962471..9962635 707..871 98   Plus

BO08826.5prime Sequence

979 bp (773 high quality bases) assembled on 2006-01-09

> BO08826.5prime
GAAGTTATCAGTCGACATGTGCAGCTTGGACGTAAGACGCTTCTTCGAGG
AGTGGCGCATCTGGATACGCCCGCTGCTCATTATCACCTATGTCATCTTC
GCCATCATCGTGGTCCCGCTGCTCATTGTGAACTCCGTGAAGGATGGCTT
CCAGCGCAATGACCAGCTCATTCTCATCGGCGGTCTGTTTGTGTTGTCCG
CAGTGCCCGTGTCCATTTGGCATATCATCCAACACGTCATTCATTTTACC
AAGCCCATACTGCAGAAGCACATAATCCGCATATTGTGGATGGTGCCTAT
CTACGCCTTGAACGCGTGGATCGGCCTTTTCTTTCCGAAGCACTCCATCT
ACGTGGACTCACTGCGCGAGTGCTACGAGGCGTACGTTATCTACAACTTC
ATGGTGTACCTGCTCAACTACTTGAATCTCGGTATGGACCTAGAGGCCAC
AATGGAGTACAAGCCGCAGGTGCCTCACTTCTTTCCGCTCTGCTGCATGC
GGCCGTGGGTGATGGGTCGTGAATTCATCCACAACTGCAAGCACGGCATC
CTCCAGTACACGGTCGTGCGCCCCATTACCACCTTTATCTCTGTCATCTG
CGAGCTATGCGGCGTTTACGGCGAGGGCGAGTTTGCGGGCAACGTGGCCT
TCCCCTATATTGTGGTGGTCAACAATATATCCCAGTTCGTGGCCATGTAT
TGCCTGGTGCTATTTTACCGTGCAAACAAGGAGGATCTCAAACCAATGAA
GCCTATTCCCAAATTCCTGTGCATCAAGGCTGTGGTGTTTTTCTCGTTTT
TCCAAGGAGTGCTACTCAACGTACTGGTATACTATAATATTATTAAGGAC
ATCTTTGGGTCGGATGTGGGAGACACCAATCTGGCTTCCCTGCTTCAGAA
TTTCCTCATCTGCATCGAAATGTTTATCGCGGCCGTGGCTCACATCTACA
GCTTCCCGCACCATCCGTTTCACATCACT

BO08826.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG5850-PB 1710 CG5850-RB 1..961 17..977 4805 100 Plus
CG5850-PA 1476 CG5850-RA 1..961 17..977 4805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:58:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG5850-RC 2935 CG5850-RC 558..1518 17..977 4805 100 Plus
CG5850-RG 2744 CG5850-RG 364..1324 17..977 4805 100 Plus
CG5850-RF 2678 CG5850-RF 364..1324 17..977 4805 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:58:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9963093..9963392 316..17 1500 100 Minus
2L 23513712 2L 9962735..9963013 594..316 1395 100 Minus
2L 23513712 2L 9962471..9962677 801..595 1035 100 Minus
2L 23513712 2L 9962318..9962414 898..802 485 100 Minus
2L 23513712 2L 9961981..9962062 977..896 410 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:58:33 has no hits.

BO08826.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:54:35 Download gff for BO08826.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5850-PA 1..964 17..979 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:52:10 Download gff for BO08826.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5850-PA 1..964 17..979 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:30:25 Download gff for BO08826.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5850-RF 356..1327 10..979 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:07:21 Download gff for BO08826.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5850-RF 356..1327 10..979 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:07:21 Download gff for BO08826.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9962735..9963012 317..594 100 <- Minus
2L 9961978..9962059 899..979 98 <- Minus
2L 9962318..9962414 802..898 100 <- Minus
2L 9962471..9962677 595..801 100 <- Minus
2L 9963093..9963398 11..316 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:30:25 Download gff for BO08826.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9962471..9962677 595..801 100 <- Minus
arm_2L 9962735..9963012 317..594 100 <- Minus
arm_2L 9963093..9963398 11..316 98 <- Minus
arm_2L 9961978..9962059 899..979 98 <- Minus
arm_2L 9962318..9962414 802..898 100 <- Minus

BO08826.complete Sequence

1507 bp (1507 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ631283

> BO08826.complete
GAAGTTATCAGTCGACATGTGCAGCTTGGACGTAAGACGCTTCTTCGAGG
AGTGGCGCATCTGGATACGCCCGCTGCTCATTATCACCTATGTCATCTTC
GCCATCATCGTGGTCCCGCTGCTCATTGTGAACTCCGTGAAGGATGGCTT
CCAGCGCAATGACCAGCTCATTCTCATCGGCGGTCTGTTTGTGTTGTCCG
CAGTGCCCGTGTCCATTTGGCATATCATCCAACACGTCATTCATTTTACC
AAGCCCATACTGCAGAAGCACATAATCCGCATATTGTGGATGGTGCCTAT
CTACGCCTTGAACGCGTGGATCGGCCTTTTCTTTCCGAAGCACTCCATCT
ACGTGGACTCACTGCGCGAGTGCTACGAGGCGTACGTTATCTACAACTTC
ATGGTGTACCTGCTCAACTACTTGAATCTCGGTATGGACCTAGAGGCCAC
AATGGAGTACAAGCCGCAGGTGCCTCACTTCTTTCCGCTCTGCTGCATGC
GGCCGTGGGTGATGGGTCGTGAATTCATCCACAACTGCAAGCACGGCATC
CTCCAGTACACGGTCGTGCGCCCCATTACCACCTTTATCTCTGTCATCTG
CGAGCTATGCGGCGTTTACGGCGAGGGCGAGTTTGCGGGCAACGTGGCCT
TCCCCTATATTGTGGTGGTCAACAATATATCCCAGTTCGTGGCCATGTAT
TGCCTGGTGCTATTTTACCGTGCAAACAAGGAGGATCTCAAACCAATGAA
GCCTATTCCCAAATTCCTGTGCATCAAGGCTGTGGTGTTTTTCTCGTTTT
TCCAAGGAGTGCTACTCAACGTACTGGTATACTATAATATTATTAAGGAC
ATCTTTGGGTCGGATGTGGGAGACACCAATCTGGCTTCCCTGCTTCAGAA
TTTCCTCATCTGCATCGAAATGTTTATCGCGGCCGTGGCTCACATCTACA
GCTTCCCGCACCATCCGTTTCACATCAACTCGCCGCAGTACTGGAACAAC
CCGAACCATAGCTGGTGTCGCGCCTTCCTCTCCATGATGGACATATCCGA
CATGCAGGAGGATGTCACCGAGCATCTGGGCGTCGTGGGCAGTTCACTGA
GTCGTCGCTTCCAGGGACGCAGCACATACCAGCCGCTGGCGCGCAGTCCT
CGCCGCTCCAGCAGTGAGTCCGAGTATCTGATCAGCAAGCGGCAAGATCA
GCAGCTGCCGGGCAACTCGTCACAATCAGCAGGCGTGGCCGACGATGGGA
ACAGTAGCAATAGCAACTACCAACAACAACAACTACACTTGCCGGGAGCG
GCAGGCTCTCAGCCGTCGACCCGTCAACGCGACACACTGCATCTTCGCGA
GCGCGAAAGGGATCCGGGTGCGGGTGCTGGCGGCGGTGGCAGTTTCCTGC
GCCTGCCCCCTGGTGCCGCGTCGGCAGCGGCGCCAATTCCCGAGTCCAAC
GATGATTATGCCCTGCTGTTGGGTGCGGGCGCAGGCAGGGCAAGCTTTCT
AGACCAT

BO08826.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG5850-RG 1827 CG5850-PG 1..1473 17..1489 7365 100 Plus
CG5850-RD 1476 CG5850-PD 1..1473 17..1489 7365 100 Plus
CG5850-RA 1476 CG5850-PA 1..1473 17..1489 7365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5850-RG 2744 CG5850-RG 364..1836 17..1489 7365 100 Plus
CG5850-RD 3946 CG5850-RD 364..1836 17..1489 7365 100 Plus
CG5850-RA 2744 CG5850-RA 364..1836 17..1489 7365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:49:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9961729..9962062 1229..896 1670 100 Minus
2L 23513712 2L 9963093..9963392 316..17 1500 100 Minus
2L 23513712 2L 9962735..9963013 594..316 1395 100 Minus
2L 23513712 2L 9961358..9961619 1489..1228 1310 100 Minus
2L 23513712 2L 9962471..9962677 801..595 1035 100 Minus
2L 23513712 2L 9962318..9962414 898..802 485 100 Minus
Blast to na_te.dros performed on 2014-11-26 14:49:53 has no hits.

BO08826.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:58 Download gff for BO08826.complete
Subject Subject Range Query Range Percent Splice Strand
CG5850-RA 1..1476 17..1492 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:30:14 Download gff for BO08826.complete
Subject Subject Range Query Range Percent Splice Strand
CG5850-RA 370..1860 10..1496 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:35 Download gff for BO08826.complete
Subject Subject Range Query Range Percent Splice Strand
CG5850-RA 364..1836 17..1491 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:58 Download gff for BO08826.complete
Subject Subject Range Query Range Percent Splice Strand
CG5850-RA 370..1860 10..1496 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:05 Download gff for BO08826.complete
Subject Subject Range Query Range Percent Splice Strand
CG5850-RA 364..1836 17..1491 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:05 Download gff for BO08826.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9962318..9962414 802..898 100 <- Minus
2L 9961354..9961617 1230..1491 99 <- Minus
2L 9962471..9962677 595..801 100 <- Minus
2L 9961729..9962059 899..1229 100 <- Minus
2L 9963093..9963392 17..316 100   Minus
2L 9962735..9963012 317..594 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:35 Download gff for BO08826.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9962471..9962677 595..801 100 <- Minus
arm_2L 9961354..9961617 1230..1491 99 <- Minus
arm_2L 9961729..9962059 899..1229 100 <- Minus
arm_2L 9962318..9962414 802..898 100 <- Minus
arm_2L 9962735..9963012 317..594 100 <- Minus
arm_2L 9963093..9963392 17..316 100   Minus

BO08826.pep Sequence

Translation from 16 to 1507

> BO08826.pep
MCSLDVRRFFEEWRIWIRPLLIITYVIFAIIVVPLLIVNSVKDGFQRNDQ
LILIGGLFVLSAVPVSIWHIIQHVIHFTKPILQKHIIRILWMVPIYALNA
WIGLFFPKHSIYVDSLRECYEAYVIYNFMVYLLNYLNLGMDLEATMEYKP
QVPHFFPLCCMRPWVMGREFIHNCKHGILQYTVVRPITTFISVICELCGV
YGEGEFAGNVAFPYIVVVNNISQFVAMYCLVLFYRANKEDLKPMKPIPKF
LCIKAVVFFSFFQGVLLNVLVYYNIIKDIFGSDVGDTNLASLLQNFLICI
EMFIAAVAHIYSFPHHPFHINSPQYWNNPNHSWCRAFLSMMDISDMQEDV
TEHLGVVGSSLSRRFQGRSTYQPLARSPRRSSSESEYLISKRQDQQLPGN
SSQSAGVADDGNSSNSNYQQQQLHLPGAAGSQPSTRQRDTLHLRERERDP
GAGAGGGGSFLRLPPGAASAAAPIPESNDDYALLLGAGAGRASFLDH

BO08826.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5850-PG 608 CG5850-PG 1..491 1..491 2607 100 Plus
CG5850-PD 491 CG5850-PD 1..491 1..491 2607 100 Plus
CG5850-PA 491 CG5850-PA 1..491 1..491 2607 100 Plus
CG5850-PC 490 CG5850-PC 1..490 1..491 2591 99.8 Plus
CG5850-PF 469 CG5850-PF 1..469 1..491 2463 95.3 Plus