Clone BO08844 Report

Search the DGRC for BO08844

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:88
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptCG7878-RA
Protein status:BO08844.pep: validated full length
Sequenced Size:2143

Clone Sequence Records

BO08844.3prime Sequence

977 bp (825 high quality bases) assembled on 2006-01-09

> BO08844.3prime
ATGGTCTAGAAAGCTTGCGTATTGAAATTGATCGAAATTTCGGCGTCCGC
CGCCACGTCCGCCTCCAAAACGACCACCTCTTCCTCCAAAACCGCCACCT
TCAGCAGCGCGCTTGTCCTTCATGGCTTTAAAGCGTCTAGCCATGTTGTG
CAGTTCGTCGGGCACTTCCTGCTCCGCCTCCTGCAGTATCTCAATTAGTT
CCTTGGCCATAGCCCAATCCTCGCGCGTAAAAAAGCTTATTGATGTGCCC
TGTCGGCCAGCACGTCCGGTGCGACCAACACGGTGCACATACTCCTCGAT
GTTGTGCGGAAAATCATAGTTGATGACATGTGTGATATCCTCAATGTCCA
GGCCACGTGATGCCACATCGGTAGCAACCAGAATGCGCACGACGCCGGAC
TTAATATCGGCAATAGCCTGCTCACGATCCATCTGATCGCGATTACCATG
AATGCACTGGGTCATGAAACCATCCAGCGTAAGTTCACTGGATAGGTCGT
CAGCACGAACCTTGCGTCCACAAAATATGATGATCTTGTCCGTACTGGAC
ATGTTCTTAACGAAAGATGTAATGGTGTTGAATTTGTCCATGTCATCCTC
CATCAATTTAATAATTTGTTTCACCGAGTGCGTGGCTGCCAGATCGAGCG
ATCCGACACACACCTGGATGGGATTCTTCATATAGCTCTGCGCTAAACGA
CGTACTCCTGGTGGCCAAGTGGCCGACGTCATTATGGTCTGACGGTCCGG
ACGTATGTCTAGCATCACCTTCCGGATCTGCGGCTCGAAACCCATGTCCA
GCATGCGATCTGCCTCGTCAAGCACCAGATAAGTGATGGTGCTTACATCA
ATGACATTGGCCATTATCAAATCGTTCAGGCGTCCCGGAGTGCAGATAAT
GATCTCCGCACCGCGCTCCAAGTCGGATATCTGCATGTTGCGATTGCCAC
CGCCGTACACGCAAACCGCTTTCATGC

BO08844.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG10777-PB 2838 CG10777-RB 1161..1223 835..773 215 93.6 Minus
CG10077-PA 2457 CG10077-RA 919..975 831..775 160 91.2 Minus
CG9748-PA 2397 bel-RA 1378..1421 816..773 145 93.1 Minus
CG6227-PA 3675 CG6227-RA 1999..2040 819..778 135 92.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:05:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG7878-RA 2375 CG7878-RA 1279..2237 977..19 4795 100 Minus
CG10777-RC 6384 CG10777-RC 1683..1779 835..739 275 85.6 Minus
CG10777-RB 8365 CG10777-RB 1683..1779 835..739 275 85.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8124130..8124765 967..332 3180 100 Minus
3R 32079331 3R 8124823..8125135 331..19 1565 100 Minus
X 23542271 X 7929046..7929142 739..835 275 85.6 Plus
3L 28110227 3L 6954167..6954263 739..835 245 83.5 Plus
Blast to na_te.dros performed on 2015-02-06 11:05:14 has no hits.

BO08844.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:54:57 Download gff for BO08844.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10777-PB 1154..1232 764..843 86   Minus
CG10777-PB 1629..1667 347..385 84   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed on 2007-05-10 02:52:38 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:32:40 Download gff for BO08844.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7878-RA 1279..2237 19..977 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:42:22 Download gff for BO08844.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7878-RA 1279..2237 19..977 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:42:22 Download gff for BO08844.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8124125..8124765 332..974 99 -> Minus
3R 8124823..8125135 19..331 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:32:40 Download gff for BO08844.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3949847..3950487 332..974 99 -> Minus
arm_3R 3950545..3950857 19..331 100   Minus

BO08844.5prime Sequence

924 bp (782 high quality bases) assembled on 2006-01-09

> BO08844.5prime
GAAGTTATCAGTCGACATGTCGGATCTCGATTGGGACGATCCAAACTATG
TCGAGAAGCCGGCGGTGCATCAGGAGTACTCCAAGCCGAATAATAAGTAC
GAAAGGAGTATCCGGCGAGATGGTAACTCACGTGCATACAAAGGAGATCG
AAATGACTACGGCGGAGAAGGACGAGGCTATCGCGCTAAACGCAATGATT
ATGGCGGTGGACGTCGCGACAATCGGGATAATTACGGAGCAGGGCATCGT
GATAGTCGCGACAGTGCCGGGGGAGGAGGAGGAGACTTTAGCGAATCCTT
GAGCATCGCTTCCGAGATGGTCGGAAAAGTTATTGGAAGAGGGGGCTCCA
ATATATCCCGGATCCAGAACGACTTCAATGTCCGCGTCAAATTGGACAAG
TGCGACTTAATAGTCAAGATAACTGGTAGCATCCAGAGCAACGTCATCGA
TGCTATCAATCACGTTCGCAAGCAGGTCACTAATTCGGGTGATAGGGGAC
AGGATCGCGATAATAGGGACCACGGTTCCAATGAAAGATATGACGGAGGC
GGATACGACAGATACAAGGGGAATAGCTACGAGTTCAATCCCACTTCTTC
TGAGTCCAATAAGGACAATGGGGATCTTACGGGCATCATTGATTGGGAAG
CCCTGAATAAAGCTTCGATAGCAGCTACTGCGGCACGGTGGTCCAAGTGT
CCACCGCTAACAAAGAACTTTTACAAGGAGGCTCCTGAAGTGGCCAATCT
GACAAAATCGGAGATTGAGCGCATTCGCGAGGAGAACACAAGATAACAGT
TTCTTATGTTTTCGAGCCAAAGGAGGGGGAAACGTCACCGCCTATTCCAA
ATCCAGTTTGGACCTTCGAGCAATGCTTTGCCGAATATCCAGATATGCTT
GAGGAGATTACAAAATGGGCTTCT

BO08844.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 13:30:21 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG7878-RA 2375 CG7878-RA 129..1038 17..924 4500 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:27:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8122853..8123503 17..667 3255 100 Plus
3R 32079331 3R 8123558..8123817 667..924 1200 99.2 Plus
Blast to na_te.dros performed on 2015-02-04 01:27:20 has no hits.

BO08844.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:41:06 Download gff for BO08844.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7878-RA 129..1038 17..924 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:29:35 Download gff for BO08844.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7878-RA 129..1038 17..924 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:29:35 Download gff for BO08844.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8122853..8123503 17..667 100 -> Plus
3R 8123559..8123817 668..924 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:41:06 Download gff for BO08844.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3948575..3949225 17..667 100 -> Plus
arm_3R 3949281..3949539 668..924 99   Plus

BO08844.complete Sequence

2143 bp (2143 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631286

> BO08844.complete
GAAGTTATCAGTCGACATGTCGGATCTCGATTGGGACGATCCAAACTATG
TCGAGAAGCCGGCGGTGCATCAGGAGTACTCCAAGCCGAATAATAAGTAC
GAAAGGAGTATCCGGCGAGATGGTAACTCACGTGCATACAAAGGAGATCG
AAATGACTACGGCGGAGAAGGACGAGGCTATCGCGCTAAACGCAATGATT
ATGGCGGTGGACGTCGCGACAATCGGGATAATTACGGAGCAGGGCATCGT
GATAGTCGCGACAGTGCCGGGGGAGGAGGAGGAGACTTTAGCGAATCCTT
GAGCATCGCTTCCGAGATGGTCGGAAAAGTTATTGGAAGAGGGGGCTCCA
ATATATCCCGGATCCAGAACGACTTCAATGTCCGCGTCAAATTGGACAAG
TGCGACTTAATAGTCAAGATAACTGGTAGCATCCAGAGCAACGTCATCGA
TGCTATCAATCACGTTCGCAAGCAGGTCACTAATTCGGGTGATAGGGGAC
AGGATCGCGATAATAGGGACCACGGTTCCAATGAAAGATATGACGGAGGC
GGATACGACAGATACAAGGGGAATAGCTACGAGTTCAATCCCACTTCTTC
TGAGTCCAATAAGGACAATGGGGATCTTACGGGCATCATTGATTGGGAAG
CCCTGAATAAAGCTTCGATAGCAGCTACTGCGGCACGGTGGTCCAAGTGT
CCACCGCTAACAAAGAACTTTTACAAGGAGGCTCCTGAAGTGGCCAATCT
GACAAAATCGGAGATTGAGCGCATTCGCGAGGAGAACAACAAGATAACAG
TTTCTTATGTTTTCGAGCCAAAGGAGGGGGAAACGTCACCGCCTATTCCA
AATCCAGTTTGGACCTTCGAGCAATGCTTTGCCGAATATCCAGATATGCT
TGAGGAGATTACCAAAATGGGCTTCTCCAAGCCCTCGCCCATCCAATCGC
AGGCGTGGCCCATTCTCCTCCAAGGTCATGACATGATCGGTATCGCCCAA
ACAGGCACTGGCAAAACACTAGCCTTCCTTTTGCCCGGAATGATTCACAC
CGAGTACCAGAGCACGCCCAGGGGCACGAGGGGCGGAGCTAACGTTCTGG
TGCTGGCACCCACTCGGGAGTTGGCTCTGCAAATCGAAATGGAGGTCAAG
AAGTACTCCTTTCGTGGCATGAAAGCGGTTTGCGTGTACGGCGGTGGCAA
TCGCAACATGCAGATATCCGACTTGGAGCGCGGTGCGGAGATCATTATCT
GCACTCCGGGACGCCTGAACGATTTGATAATGGCCAATGTCATTGATGTA
AGCACCATCACTTATCTGGTGCTTGACGAGGCAGATCGCATGCTGGACAT
GGGTTTCGAGCCGCAGATCCGGAAGGTGATGCTAGACATACGTCCGGACC
GTCAGACCATAATGACGTCGGCCACTTGGCCACCAGGAGTACGTCGTTTA
GCGCAGAGCTATATGAAGAATCCCATCCAGGTGTGTGTCGGATCGCTCGA
TCTGGCAGCCACGCACTCGGTGAAACAAATTATTAAATTGATGGAGGATG
ACATGGACAAATTCAACACCATTACATCTTTCGTTAAGAACATGTCCAGT
ACGGACAAGATCATCATATTTTGTGGACGCAAGGTTCGTGCTGACGACCT
ATCCAGTGAACTTACGCTGGATGGTTTCATGACCCAGTGCATTCATGGTA
ATCGCGATCAGATGGATCGTGAGCAGGCTATTGCCGATATTAAGTCCGGC
GTCGTGCGCATTCTGGTTGCTACCGATGTGGCATCACGTGGCCTGGACAT
TGAGGATATCACACATGTCATCAACTATGATTTTCCGCACAACATCGAGG
AGTATGTGCACCGTGTTGGTCGCACCGGACGTGCTGGCCGACAGGGCACA
TCAATAAGCTTTTTTACGCGCGAGGATTGGGCTATGGCCAAGGAACTAAT
TGAGATACTGCAGGAGGCGGAGCAGGAAGTGCCCGACGAACTGCACAACA
TGGCTAGACGCTTTAAAGCCATGAAGGACAAGCGCGCTGCTGAAGGTGGC
GGTTTTGGAGGAAGAGGTGGTCGTTTTGGAGGCGGACGTGGCGGCGGACG
CCGAAATTTCGATCAATTTCAATACGCAAGCTTTCTAGACCAT

BO08844.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:36:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7878-RA 2112 CG7878-PA 1..2109 17..2125 10545 100 Plus
CG10777-RC 2838 CG10777-PC 1161..1257 1309..1405 275 85.6 Plus
CG10777-RB 2838 CG10777-PB 1161..1257 1309..1405 275 85.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:36:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7878-RA 2375 CG7878-RA 129..2237 17..2125 10545 100 Plus
CG10777-RC 6384 CG10777-RC 1683..1779 1309..1405 275 85.6 Plus
CG10777-RB 8365 CG10777-RB 1683..1779 1309..1405 275 85.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:36:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8122853..8123503 17..667 3255 100 Plus
3R 32079331 3R 8124130..8124765 1177..1812 3180 100 Plus
3R 32079331 3R 8123558..8124068 667..1177 2555 100 Plus
3R 32079331 3R 8124823..8125135 1813..2125 1565 100 Plus
X 23542271 X 7929046..7929142 1405..1309 275 85.6 Minus
3L 28110227 3L 6954167..6954263 1405..1309 245 83.5 Minus
Blast to na_te.dros performed on 2014-11-27 13:36:54 has no hits.

BO08844.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:09 Download gff for BO08844.complete
Subject Subject Range Query Range Percent Splice Strand
CG7878-RA 1..2112 17..2128 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:18:22 Download gff for BO08844.complete
Subject Subject Range Query Range Percent Splice Strand
CG7878-RA 155..2263 17..2125 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:52:20 Download gff for BO08844.complete
Subject Subject Range Query Range Percent Splice Strand
CG7878-RA 129..2237 17..2127 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:09 Download gff for BO08844.complete
Subject Subject Range Query Range Percent Splice Strand
CG7878-RA 155..2263 17..2125 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:32 Download gff for BO08844.complete
Subject Subject Range Query Range Percent Splice Strand
CG7878-RA 129..2237 17..2127 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:32 Download gff for BO08844.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8123559..8124067 668..1176 100 -> Plus
3R 8122853..8123503 17..667 100 -> Plus
3R 8124130..8124765 1177..1812 100 -> Plus
3R 8124823..8125135 1813..2127 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:52:20 Download gff for BO08844.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3948575..3949225 17..667 100 -> Plus
arm_3R 3949281..3949789 668..1176 100 -> Plus
arm_3R 3949852..3950487 1177..1812 100 -> Plus
arm_3R 3950545..3950857 1813..2127 99   Plus

BO08844.pep Sequence

Translation from 16 to 2143

> BO08844.pep
MSDLDWDDPNYVEKPAVHQEYSKPNNKYERSIRRDGNSRAYKGDRNDYGG
EGRGYRAKRNDYGGGRRDNRDNYGAGHRDSRDSAGGGGGDFSESLSIASE
MVGKVIGRGGSNISRIQNDFNVRVKLDKCDLIVKITGSIQSNVIDAINHV
RKQVTNSGDRGQDRDNRDHGSNERYDGGGYDRYKGNSYEFNPTSSESNKD
NGDLTGIIDWEALNKASIAATAARWSKCPPLTKNFYKEAPEVANLTKSEI
ERIREENNKITVSYVFEPKEGETSPPIPNPVWTFEQCFAEYPDMLEEITK
MGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQST
PRGTRGGANVLVLAPTRELALQIEMEVKKYSFRGMKAVCVYGGGNRNMQI
SDLERGAEIIICTPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQ
IRKVMLDIRPDRQTIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATH
SVKQIIKLMEDDMDKFNTITSFVKNMSSTDKIIIFCGRKVRADDLSSELT
LDGFMTQCIHGNRDQMDREQAIADIKSGVVRILVATDVASRGLDIEDITH
VINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTREDWAMAKELIEILQE
AEQEVPDELHNMARRFKAMKDKRAAEGGGFGGRGGRFGGGRGGGRRNFDQ
FQYASFLDH

BO08844.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG7878-PA 703 CG7878-PA 1..703 1..703 3699 100 Plus
Rm62-PH 575 CG10279-PH 18..546 158..690 1005 41.7 Plus
Rm62-PD 575 CG10279-PD 18..546 158..690 1005 41.7 Plus
Rm62-PI 578 CG10279-PI 21..549 158..690 1005 41.7 Plus
Rm62-PF 578 CG10279-PF 21..549 158..690 1005 41.7 Plus