Clone Sequence Records
BO08844.3prime Sequence
977 bp (825 high quality bases) assembled on 2006-01-09
> BO08844.3prime
ATGGTCTAGAAAGCTTGCGTATTGAAATTGATCGAAATTTCGGCGTCCGC
CGCCACGTCCGCCTCCAAAACGACCACCTCTTCCTCCAAAACCGCCACCT
TCAGCAGCGCGCTTGTCCTTCATGGCTTTAAAGCGTCTAGCCATGTTGTG
CAGTTCGTCGGGCACTTCCTGCTCCGCCTCCTGCAGTATCTCAATTAGTT
CCTTGGCCATAGCCCAATCCTCGCGCGTAAAAAAGCTTATTGATGTGCCC
TGTCGGCCAGCACGTCCGGTGCGACCAACACGGTGCACATACTCCTCGAT
GTTGTGCGGAAAATCATAGTTGATGACATGTGTGATATCCTCAATGTCCA
GGCCACGTGATGCCACATCGGTAGCAACCAGAATGCGCACGACGCCGGAC
TTAATATCGGCAATAGCCTGCTCACGATCCATCTGATCGCGATTACCATG
AATGCACTGGGTCATGAAACCATCCAGCGTAAGTTCACTGGATAGGTCGT
CAGCACGAACCTTGCGTCCACAAAATATGATGATCTTGTCCGTACTGGAC
ATGTTCTTAACGAAAGATGTAATGGTGTTGAATTTGTCCATGTCATCCTC
CATCAATTTAATAATTTGTTTCACCGAGTGCGTGGCTGCCAGATCGAGCG
ATCCGACACACACCTGGATGGGATTCTTCATATAGCTCTGCGCTAAACGA
CGTACTCCTGGTGGCCAAGTGGCCGACGTCATTATGGTCTGACGGTCCGG
ACGTATGTCTAGCATCACCTTCCGGATCTGCGGCTCGAAACCCATGTCCA
GCATGCGATCTGCCTCGTCAAGCACCAGATAAGTGATGGTGCTTACATCA
ATGACATTGGCCATTATCAAATCGTTCAGGCGTCCCGGAGTGCAGATAAT
GATCTCCGCACCGCGCTCCAAGTCGGATATCTGCATGTTGCGATTGCCAC
CGCCGTACACGCAAACCGCTTTCATGC
BO08844.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10777-PB | 2838 | CG10777-RB | 1161..1223 | 835..773 | 215 | 93.6 | Minus |
CG10077-PA | 2457 | CG10077-RA | 919..975 | 831..775 | 160 | 91.2 | Minus |
CG9748-PA | 2397 | bel-RA | 1378..1421 | 816..773 | 145 | 93.1 | Minus |
CG6227-PA | 3675 | CG6227-RA | 1999..2040 | 819..778 | 135 | 92.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:05:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7878-RA | 2375 | CG7878-RA | 1279..2237 | 977..19 | 4795 | 100 | Minus |
CG10777-RC | 6384 | CG10777-RC | 1683..1779 | 835..739 | 275 | 85.6 | Minus |
CG10777-RB | 8365 | CG10777-RB | 1683..1779 | 835..739 | 275 | 85.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:05:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8124130..8124765 | 967..332 | 3180 | 100 | Minus |
3R | 32079331 | 3R | 8124823..8125135 | 331..19 | 1565 | 100 | Minus |
X | 23542271 | X | 7929046..7929142 | 739..835 | 275 | 85.6 | Plus |
3L | 28110227 | 3L | 6954167..6954263 | 739..835 | 245 | 83.5 | Plus |
Blast to na_te.dros performed on 2015-02-06 11:05:14 has no hits.
BO08844.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:54:57 Download gff for
BO08844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10777-PB | 1154..1232 | 764..843 | 86 | | Minus |
CG10777-PB | 1629..1667 | 347..385 | 84 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed on 2007-05-10 02:52:38 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:32:40 Download gff for
BO08844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7878-RA | 1279..2237 | 19..977 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:42:22 Download gff for
BO08844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7878-RA | 1279..2237 | 19..977 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:42:22 Download gff for
BO08844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8124125..8124765 | 332..974 | 99 | -> | Minus |
3R | 8124823..8125135 | 19..331 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:32:40 Download gff for
BO08844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3949847..3950487 | 332..974 | 99 | -> | Minus |
arm_3R | 3950545..3950857 | 19..331 | 100 | | Minus |
BO08844.5prime Sequence
924 bp (782 high quality bases) assembled on 2006-01-09
> BO08844.5prime
GAAGTTATCAGTCGACATGTCGGATCTCGATTGGGACGATCCAAACTATG
TCGAGAAGCCGGCGGTGCATCAGGAGTACTCCAAGCCGAATAATAAGTAC
GAAAGGAGTATCCGGCGAGATGGTAACTCACGTGCATACAAAGGAGATCG
AAATGACTACGGCGGAGAAGGACGAGGCTATCGCGCTAAACGCAATGATT
ATGGCGGTGGACGTCGCGACAATCGGGATAATTACGGAGCAGGGCATCGT
GATAGTCGCGACAGTGCCGGGGGAGGAGGAGGAGACTTTAGCGAATCCTT
GAGCATCGCTTCCGAGATGGTCGGAAAAGTTATTGGAAGAGGGGGCTCCA
ATATATCCCGGATCCAGAACGACTTCAATGTCCGCGTCAAATTGGACAAG
TGCGACTTAATAGTCAAGATAACTGGTAGCATCCAGAGCAACGTCATCGA
TGCTATCAATCACGTTCGCAAGCAGGTCACTAATTCGGGTGATAGGGGAC
AGGATCGCGATAATAGGGACCACGGTTCCAATGAAAGATATGACGGAGGC
GGATACGACAGATACAAGGGGAATAGCTACGAGTTCAATCCCACTTCTTC
TGAGTCCAATAAGGACAATGGGGATCTTACGGGCATCATTGATTGGGAAG
CCCTGAATAAAGCTTCGATAGCAGCTACTGCGGCACGGTGGTCCAAGTGT
CCACCGCTAACAAAGAACTTTTACAAGGAGGCTCCTGAAGTGGCCAATCT
GACAAAATCGGAGATTGAGCGCATTCGCGAGGAGAACACAAGATAACAGT
TTCTTATGTTTTCGAGCCAAAGGAGGGGGAAACGTCACCGCCTATTCCAA
ATCCAGTTTGGACCTTCGAGCAATGCTTTGCCGAATATCCAGATATGCTT
GAGGAGATTACAAAATGGGCTTCT
BO08844.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 13:30:21 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:27:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7878-RA | 2375 | CG7878-RA | 129..1038 | 17..924 | 4500 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:27:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8122853..8123503 | 17..667 | 3255 | 100 | Plus |
3R | 32079331 | 3R | 8123558..8123817 | 667..924 | 1200 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-04 01:27:20 has no hits.
BO08844.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:41:06 Download gff for
BO08844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7878-RA | 129..1038 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:29:35 Download gff for
BO08844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7878-RA | 129..1038 | 17..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:29:35 Download gff for
BO08844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8122853..8123503 | 17..667 | 100 | -> | Plus |
3R | 8123559..8123817 | 668..924 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:41:06 Download gff for
BO08844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3948575..3949225 | 17..667 | 100 | -> | Plus |
arm_3R | 3949281..3949539 | 668..924 | 99 | | Plus |
BO08844.complete Sequence
2143 bp (2143 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631286
> BO08844.complete
GAAGTTATCAGTCGACATGTCGGATCTCGATTGGGACGATCCAAACTATG
TCGAGAAGCCGGCGGTGCATCAGGAGTACTCCAAGCCGAATAATAAGTAC
GAAAGGAGTATCCGGCGAGATGGTAACTCACGTGCATACAAAGGAGATCG
AAATGACTACGGCGGAGAAGGACGAGGCTATCGCGCTAAACGCAATGATT
ATGGCGGTGGACGTCGCGACAATCGGGATAATTACGGAGCAGGGCATCGT
GATAGTCGCGACAGTGCCGGGGGAGGAGGAGGAGACTTTAGCGAATCCTT
GAGCATCGCTTCCGAGATGGTCGGAAAAGTTATTGGAAGAGGGGGCTCCA
ATATATCCCGGATCCAGAACGACTTCAATGTCCGCGTCAAATTGGACAAG
TGCGACTTAATAGTCAAGATAACTGGTAGCATCCAGAGCAACGTCATCGA
TGCTATCAATCACGTTCGCAAGCAGGTCACTAATTCGGGTGATAGGGGAC
AGGATCGCGATAATAGGGACCACGGTTCCAATGAAAGATATGACGGAGGC
GGATACGACAGATACAAGGGGAATAGCTACGAGTTCAATCCCACTTCTTC
TGAGTCCAATAAGGACAATGGGGATCTTACGGGCATCATTGATTGGGAAG
CCCTGAATAAAGCTTCGATAGCAGCTACTGCGGCACGGTGGTCCAAGTGT
CCACCGCTAACAAAGAACTTTTACAAGGAGGCTCCTGAAGTGGCCAATCT
GACAAAATCGGAGATTGAGCGCATTCGCGAGGAGAACAACAAGATAACAG
TTTCTTATGTTTTCGAGCCAAAGGAGGGGGAAACGTCACCGCCTATTCCA
AATCCAGTTTGGACCTTCGAGCAATGCTTTGCCGAATATCCAGATATGCT
TGAGGAGATTACCAAAATGGGCTTCTCCAAGCCCTCGCCCATCCAATCGC
AGGCGTGGCCCATTCTCCTCCAAGGTCATGACATGATCGGTATCGCCCAA
ACAGGCACTGGCAAAACACTAGCCTTCCTTTTGCCCGGAATGATTCACAC
CGAGTACCAGAGCACGCCCAGGGGCACGAGGGGCGGAGCTAACGTTCTGG
TGCTGGCACCCACTCGGGAGTTGGCTCTGCAAATCGAAATGGAGGTCAAG
AAGTACTCCTTTCGTGGCATGAAAGCGGTTTGCGTGTACGGCGGTGGCAA
TCGCAACATGCAGATATCCGACTTGGAGCGCGGTGCGGAGATCATTATCT
GCACTCCGGGACGCCTGAACGATTTGATAATGGCCAATGTCATTGATGTA
AGCACCATCACTTATCTGGTGCTTGACGAGGCAGATCGCATGCTGGACAT
GGGTTTCGAGCCGCAGATCCGGAAGGTGATGCTAGACATACGTCCGGACC
GTCAGACCATAATGACGTCGGCCACTTGGCCACCAGGAGTACGTCGTTTA
GCGCAGAGCTATATGAAGAATCCCATCCAGGTGTGTGTCGGATCGCTCGA
TCTGGCAGCCACGCACTCGGTGAAACAAATTATTAAATTGATGGAGGATG
ACATGGACAAATTCAACACCATTACATCTTTCGTTAAGAACATGTCCAGT
ACGGACAAGATCATCATATTTTGTGGACGCAAGGTTCGTGCTGACGACCT
ATCCAGTGAACTTACGCTGGATGGTTTCATGACCCAGTGCATTCATGGTA
ATCGCGATCAGATGGATCGTGAGCAGGCTATTGCCGATATTAAGTCCGGC
GTCGTGCGCATTCTGGTTGCTACCGATGTGGCATCACGTGGCCTGGACAT
TGAGGATATCACACATGTCATCAACTATGATTTTCCGCACAACATCGAGG
AGTATGTGCACCGTGTTGGTCGCACCGGACGTGCTGGCCGACAGGGCACA
TCAATAAGCTTTTTTACGCGCGAGGATTGGGCTATGGCCAAGGAACTAAT
TGAGATACTGCAGGAGGCGGAGCAGGAAGTGCCCGACGAACTGCACAACA
TGGCTAGACGCTTTAAAGCCATGAAGGACAAGCGCGCTGCTGAAGGTGGC
GGTTTTGGAGGAAGAGGTGGTCGTTTTGGAGGCGGACGTGGCGGCGGACG
CCGAAATTTCGATCAATTTCAATACGCAAGCTTTCTAGACCAT
BO08844.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:36:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7878-RA | 2112 | CG7878-PA | 1..2109 | 17..2125 | 10545 | 100 | Plus |
CG10777-RC | 2838 | CG10777-PC | 1161..1257 | 1309..1405 | 275 | 85.6 | Plus |
CG10777-RB | 2838 | CG10777-PB | 1161..1257 | 1309..1405 | 275 | 85.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:36:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7878-RA | 2375 | CG7878-RA | 129..2237 | 17..2125 | 10545 | 100 | Plus |
CG10777-RC | 6384 | CG10777-RC | 1683..1779 | 1309..1405 | 275 | 85.6 | Plus |
CG10777-RB | 8365 | CG10777-RB | 1683..1779 | 1309..1405 | 275 | 85.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:36:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8122853..8123503 | 17..667 | 3255 | 100 | Plus |
3R | 32079331 | 3R | 8124130..8124765 | 1177..1812 | 3180 | 100 | Plus |
3R | 32079331 | 3R | 8123558..8124068 | 667..1177 | 2555 | 100 | Plus |
3R | 32079331 | 3R | 8124823..8125135 | 1813..2125 | 1565 | 100 | Plus |
X | 23542271 | X | 7929046..7929142 | 1405..1309 | 275 | 85.6 | Minus |
3L | 28110227 | 3L | 6954167..6954263 | 1405..1309 | 245 | 83.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:36:54 has no hits.
BO08844.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:09 Download gff for
BO08844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7878-RA | 1..2112 | 17..2128 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:18:22 Download gff for
BO08844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7878-RA | 155..2263 | 17..2125 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:52:20 Download gff for
BO08844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7878-RA | 129..2237 | 17..2127 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:09 Download gff for
BO08844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7878-RA | 155..2263 | 17..2125 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:32 Download gff for
BO08844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7878-RA | 129..2237 | 17..2127 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:32 Download gff for
BO08844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8123559..8124067 | 668..1176 | 100 | -> | Plus |
3R | 8122853..8123503 | 17..667 | 100 | -> | Plus |
3R | 8124130..8124765 | 1177..1812 | 100 | -> | Plus |
3R | 8124823..8125135 | 1813..2127 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:52:20 Download gff for
BO08844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3948575..3949225 | 17..667 | 100 | -> | Plus |
arm_3R | 3949281..3949789 | 668..1176 | 100 | -> | Plus |
arm_3R | 3949852..3950487 | 1177..1812 | 100 | -> | Plus |
arm_3R | 3950545..3950857 | 1813..2127 | 99 | | Plus |
BO08844.pep Sequence
Translation from 16 to 2143
> BO08844.pep
MSDLDWDDPNYVEKPAVHQEYSKPNNKYERSIRRDGNSRAYKGDRNDYGG
EGRGYRAKRNDYGGGRRDNRDNYGAGHRDSRDSAGGGGGDFSESLSIASE
MVGKVIGRGGSNISRIQNDFNVRVKLDKCDLIVKITGSIQSNVIDAINHV
RKQVTNSGDRGQDRDNRDHGSNERYDGGGYDRYKGNSYEFNPTSSESNKD
NGDLTGIIDWEALNKASIAATAARWSKCPPLTKNFYKEAPEVANLTKSEI
ERIREENNKITVSYVFEPKEGETSPPIPNPVWTFEQCFAEYPDMLEEITK
MGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQST
PRGTRGGANVLVLAPTRELALQIEMEVKKYSFRGMKAVCVYGGGNRNMQI
SDLERGAEIIICTPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQ
IRKVMLDIRPDRQTIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATH
SVKQIIKLMEDDMDKFNTITSFVKNMSSTDKIIIFCGRKVRADDLSSELT
LDGFMTQCIHGNRDQMDREQAIADIKSGVVRILVATDVASRGLDIEDITH
VINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTREDWAMAKELIEILQE
AEQEVPDELHNMARRFKAMKDKRAAEGGGFGGRGGRFGGGRGGGRRNFDQ
FQYASFLDH
BO08844.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:59:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7878-PA | 703 | CG7878-PA | 1..703 | 1..703 | 3699 | 100 | Plus |
Rm62-PH | 575 | CG10279-PH | 18..546 | 158..690 | 1005 | 41.7 | Plus |
Rm62-PD | 575 | CG10279-PD | 18..546 | 158..690 | 1005 | 41.7 | Plus |
Rm62-PI | 578 | CG10279-PI | 21..549 | 158..690 | 1005 | 41.7 | Plus |
Rm62-PF | 578 | CG10279-PF | 21..549 | 158..690 | 1005 | 41.7 | Plus |