Clone Sequence Records
BO08848.5prime Sequence
656 bp (655 high quality bases) assembled on 2006-01-09
> BO08848.5prime
GAAGTTATCAGTCGACATGCCAGTGAAAAAGCAAGAAGCTCATCGGGCTC
TCGAGCTGCTCGAGGACTACCACGCGAGACTTTCGGAGCCGCAGGATCGG
GCGCTGCGTATTGCAATCGAACGCGTTATACGCATATTTAAATCTCGCTT
GTTTCAAGCGCTGTTAGATATACAAGAATTCTATGAATTGACATTATTGG
ATGACTCGAAGAGCATACAACAAAAGACAGCGGAGACCTTGCAAATTGCA
ACCAAATGGGAAAAGGATGGCCAGGCAGTCAAAATAGCTGATAATCAGCG
CATGCGCATCGAATCGGACACGGAAAATGCCAAGGAGCCAACTGTCGAGC
AGCAGCAAAAGCAGCAGCAAGCGCAGCAGCGCAGTTCCCGCTCCCCGCAG
CAGCAGAATCCGCAGCAGCAGCAGGGATCCAAATCGAGGAGCGGGTCCCA
GACTTCACAGATACAGATACAGTCACTTACACAGACATACCCAAACGCAC
ACCAGCGCAAGCGAGTCCTCGTGAGCCTCCATCCACATCAACATCAACAT
CAAAGCCAAATTCAACACCAACACCATTACCAACTTCGCCATAACAACGG
CATTCAAGCCAAAATGCTTAAGCGCGCTTTTGAGTCCACCGCAAGCTTTC
TAGACC
BO08848.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1725-PC | 627 | dlg1-RC | 1..624 | 17..640 | 3120 | 100 | Plus |
CG1725-PJ | 627 | dlg1-RJ | 1..624 | 17..640 | 3120 | 100 | Plus |
CG1725-PI | 627 | dlg1-RI | 1..624 | 17..640 | 3120 | 100 | Plus |
CG1725-PH | 2736 | dlg1-RH | 1..438 | 17..454 | 2190 | 100 | Plus |
CG1725-PB | 2913 | dlg1-RB | 1..276 | 17..292 | 1380 | 100 | Plus |
CG1725-PF | 2451 | dlg1-RF | 911..1167 | 36..292 | 1285 | 100 | Plus |
CG1725-PB | 2913 | dlg1-RB | 454..615 | 293..454 | 810 | 100 | Plus |
CG1725-PF | 2451 | dlg1-RF | 1345..1506 | 293..454 | 810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:53:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dlg1-RI | 2114 | CG1725-RI | 371..994 | 17..640 | 3120 | 100 | Plus |
dlg1-RJ | 2102 | CG1725-RJ | 359..982 | 17..640 | 3120 | 100 | Plus |
dlg1-RC | 2554 | CG1725-RC | 811..1434 | 17..640 | 3120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:53:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11387986..11388171 | 455..640 | 930 | 100 | Plus |
X | 23542271 | X | 11387772..11387933 | 293..454 | 810 | 100 | Plus |
X | 23542271 | X | 11376840..11376973 | 34..167 | 670 | 100 | Plus |
X | 23542271 | X | 11381854..11381980 | 166..292 | 635 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 10:53:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2285..2538 | 328..584 | 222 | 57.7 | Plus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 549..634 | 530..614 | 130 | 62.8 | Plus |
rover | 7318 | rover ROVER 7318bp | 1930..1997 | 545..612 | 123 | 68.1 | Plus |
BO08848.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:05 Download gff for
BO08848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1725-PI | 1..627 | 17..641 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:52:47 Download gff for
BO08848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1725-PJ | 1..627 | 17..641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:01:23 Download gff for
BO08848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dlg1-RC | 804..1440 | 8..649 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:46:34 Download gff for
BO08848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dlg1-RC | 804..1440 | 8..649 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:46:34 Download gff for
BO08848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11376842..11376973 | 36..167 | 100 | -> | Plus |
X | 11381856..11381980 | 168..292 | 100 | -> | Plus |
X | 11387772..11387933 | 293..454 | 100 | -> | Plus |
X | 11387986..11388177 | 455..649 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:01:23 Download gff for
BO08848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11270875..11271006 | 36..167 | 100 | -> | Plus |
arm_X | 11275889..11276013 | 168..292 | 100 | -> | Plus |
arm_X | 11281805..11281966 | 293..454 | 100 | -> | Plus |
arm_X | 11282019..11282210 | 455..649 | 97 | | Plus |
BO08848.3prime Sequence
656 bp (655 high quality bases) assembled on 2006-01-10
> BO08848.3prime
ATGGTCTAGAAAGCTTGCGGTGGACTCAAAAGCGCGCTTAAGCATTTTGG
CTTGAATGCCGTTGTTATGGCGAAGTTGGTAATGGTGTTGGTGTTGAATT
TGGCTTTGATGTTGATGTTGATGTGGATGGAGGCTCACGAGGACTCGCTT
GCGCTGGTGTGCGTTTGGGTATGTCTGTGTAAGTGACTGTATCTGTATCT
GTGAAGTCTGGGACCCGCTCCTCGATTTGGATCCCTGCTGCTGCTGCGGA
TTCTGCTGCTGCGGGGAGCGGGAACTGCGCTGCTGCGCTTGCTGCTGCTT
TTGCTGCTGCTCGACAGTTGGCTCCTTGGCATTTTCCGTGTCCGATTCGA
TGCGCATGCGCTGATTATCAGCTATTTTGACTGCCTGGCCATCCTTTTCC
CATTTGGTTGCAATTTGCAAGGTCTCCGCTGTCTTTTGTTGTATGCTCTT
CGAGTCATCCAATAATGTCAATTCATAGAATTCTTGTATATCTAACAGCG
CTTGAAACAAGCGAGATTTAAATATGCGTATAACGCGTTCGATTGCAATA
CGCAGCGCCCGATCCTGCGGCTCCGAAAGTCTCGCGTGGTAGTCCTCGAG
CAGCTCGAGAGCCCGATGAGCTTCTTGCTTTTTCACTGGCATGTCGACTG
ATAACT
BO08848.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1725-PC | 627 | dlg1-RC | 1..624 | 642..19 | 3120 | 100 | Minus |
CG1725-PJ | 627 | dlg1-RJ | 1..624 | 642..19 | 3120 | 100 | Minus |
CG1725-PI | 627 | dlg1-RI | 1..624 | 642..19 | 3120 | 100 | Minus |
CG1725-PH | 2736 | dlg1-RH | 1..438 | 642..205 | 2190 | 100 | Minus |
CG1725-PB | 2913 | dlg1-RB | 1..276 | 642..367 | 1380 | 100 | Minus |
CG1725-PF | 2451 | dlg1-RF | 911..1167 | 623..367 | 1285 | 100 | Minus |
CG1725-PB | 2913 | dlg1-RB | 454..615 | 366..205 | 810 | 100 | Minus |
CG1725-PF | 2451 | dlg1-RF | 1345..1506 | 366..205 | 810 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:14:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dlg1-RI | 2114 | CG1725-RI | 371..994 | 642..19 | 3120 | 100 | Minus |
dlg1-RJ | 2102 | CG1725-RJ | 359..982 | 642..19 | 3120 | 100 | Minus |
dlg1-RC | 2554 | CG1725-RC | 811..1434 | 642..19 | 3120 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:14:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11387986..11388171 | 204..19 | 930 | 100 | Minus |
X | 23542271 | X | 11387772..11387933 | 366..205 | 810 | 100 | Minus |
X | 23542271 | X | 11376840..11376973 | 625..492 | 670 | 100 | Minus |
X | 23542271 | X | 11381854..11381980 | 493..367 | 635 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 19:14:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2285..2538 | 331..75 | 222 | 57.7 | Minus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 549..634 | 129..45 | 130 | 62.8 | Minus |
rover | 7318 | rover ROVER 7318bp | 1930..1997 | 114..47 | 123 | 68.1 | Minus |
BO08848.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:04 Download gff for
BO08848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1725-PI | 1..627 | 18..642 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:52:45 Download gff for
BO08848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1725-PJ | 1..627 | 18..642 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:01:11 Download gff for
BO08848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dlg1-RC | 804..1440 | 10..651 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:33:39 Download gff for
BO08848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dlg1-RC | 804..1440 | 10..651 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:33:39 Download gff for
BO08848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11376842..11376973 | 492..623 | 100 | -> | Minus |
X | 11381856..11381980 | 367..491 | 100 | -> | Minus |
X | 11387772..11387933 | 205..366 | 100 | -> | Minus |
X | 11387986..11388177 | 10..204 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:01:11 Download gff for
BO08848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11270875..11271006 | 492..623 | 100 | -> | Minus |
arm_X | 11275889..11276013 | 367..491 | 100 | -> | Minus |
arm_X | 11281805..11281966 | 205..366 | 100 | -> | Minus |
arm_X | 11282019..11282210 | 10..204 | 97 | | Minus |
BO08848.complete Sequence
658 bp (658 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631287
> BO08848.complete
GAAGTTATCAGTCGACATGCCAGTGAAAAAGCAAGAAGCTCATCGGGCTC
TCGAGCTGCTCGAGGACTACCACGCGAGACTTTCGGAGCCGCAGGATCGG
GCGCTGCGTATTGCAATCGAACGCGTTATACGCATATTTAAATCTCGCTT
GTTTCAAGCGCTGTTAGATATACAAGAATTCTATGAATTGACATTATTGG
ATGACTCGAAGAGCATACAACAAAAGACAGCGGAGACCTTGCAAATTGCA
ACCAAATGGGAAAAGGATGGCCAGGCAGTCAAAATAGCTGATAATCAGCG
CATGCGCATCGAATCGGACACGGAAAATGCCAAGGAGCCAACTGTCGAGC
AGCAGCAAAAGCAGCAGCAAGCGCAGCAGCGCAGTTCCCGCTCCCCGCAG
CAGCAGAATCCGCAGCAGCAGCAGGGATCCAAATCGAGGAGCGGGTCCCA
GACTTCACAGATACAGATACAGTCACTTACACAGACATACCCAAACGCAC
ACCAGCGCAAGCGAGTCCTCGTGAGCCTCCATCCACATCAACATCAACAT
CAAAGCCAAATTCAACACCAACACCATTACCAACTTCGCCATAACAACGG
CATTCAAGCCAAAATGCTTAAGCGCGCTTTTGAGTCCACCGCAAGCTTTC
TAGACCAT
BO08848.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:32:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dlg1-RI | 627 | CG1725-PI | 1..624 | 17..640 | 3120 | 100 | Plus |
dlg1-RJ | 627 | CG1725-PJ | 1..624 | 17..640 | 3120 | 100 | Plus |
dlg1-RC | 627 | CG1725-PC | 1..624 | 17..640 | 3120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:32:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dlg1-RI | 2114 | CG1725-RI | 371..994 | 17..640 | 3120 | 100 | Plus |
dlg1-RJ | 2102 | CG1725-RJ | 359..982 | 17..640 | 3120 | 100 | Plus |
dlg1-RC | 2554 | CG1725-RC | 811..1434 | 17..640 | 3120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:32:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11387986..11388171 | 455..640 | 930 | 100 | Plus |
X | 23542271 | X | 11387772..11387933 | 293..454 | 810 | 100 | Plus |
X | 23542271 | X | 11376840..11376973 | 34..167 | 670 | 100 | Plus |
X | 23542271 | X | 11381854..11381980 | 166..292 | 635 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 08:32:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2285..2538 | 328..584 | 222 | 57.7 | Plus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 549..634 | 530..614 | 130 | 62.8 | Plus |
rover | 7318 | rover ROVER 7318bp | 1930..1997 | 545..612 | 123 | 68.1 | Plus |
BO08848.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:04:26 Download gff for
BO08848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dlg1-RI | 1..627 | 17..641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:55:19 Download gff for
BO08848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dlg1-RI | 399..1022 | 17..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:04 Download gff for
BO08848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dlg1-RC | 811..1434 | 17..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:04:26 Download gff for
BO08848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dlg1-RI | 392..1028 | 8..649 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:07 Download gff for
BO08848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dlg1-RC | 811..1434 | 17..642 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:07 Download gff for
BO08848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11374492..11374510 | 17..35 | 100 | -> | Plus |
X | 11376842..11376973 | 36..167 | 100 | -> | Plus |
X | 11381856..11381980 | 168..292 | 100 | -> | Plus |
X | 11387772..11387933 | 293..454 | 100 | -> | Plus |
X | 11387986..11388171 | 455..642 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:04 Download gff for
BO08848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11268525..11268543 | 17..35 | 100 | -> | Plus |
arm_X | 11270875..11271006 | 36..167 | 100 | -> | Plus |
arm_X | 11275889..11276013 | 168..292 | 100 | -> | Plus |
arm_X | 11281805..11281966 | 293..454 | 100 | -> | Plus |
arm_X | 11282019..11282204 | 455..642 | 98 | | Plus |
BO08848.pep Sequence
Translation from 16 to 658
> BO08848.pep
MPVKKQEAHRALELLEDYHARLSEPQDRALRIAIERVIRIFKSRLFQALL
DIQEFYELTLLDDSKSIQQKTAETLQIATKWEKDGQAVKIADNQRMRIES
DTENAKEPTVEQQQKQQQAQQRSSRSPQQQNPQQQQGSKSRSGSQTSQIQ
IQSLTQTYPNAHQRKRVLVSLHPHQHQHQSQIQHQHHYQLRHNNGIQAKM
LKRAFESTASFLDH
BO08848.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:41:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dlg1-PI | 208 | CG1725-PI | 1..208 | 1..208 | 1055 | 100 | Plus |
dlg1-PJ | 208 | CG1725-PJ | 1..208 | 1..208 | 1055 | 100 | Plus |
dlg1-PC | 208 | CG1725-PC | 1..208 | 1..208 | 1055 | 100 | Plus |
dlg1-PO | 206 | CG1725-PO | 1..206 | 1..208 | 1033 | 99 | Plus |
dlg1-PU | 198 | CG1725-PU | 1..198 | 1..208 | 989 | 95.2 | Plus |