Clone Sequence Records
BO08849.3prime Sequence
877 bp (746 high quality bases) assembled on 2006-01-09
> BO08849.3prime
ATGGTCTAGAAAGCTTGCACTACTGTAGTCGGTGCCGTTGAGCGAGTTTT
TGAAATGCTGGACGACATAATCGTGATAATAGGCCATTATGCACAGAGGC
TGACCAAGAATAATGGAAGCCCACACGATTATATTGCCCATTCGGGGACC
CAGTTTCTTTTCAATGGATTTGGATATGGCCGATAGGGGAATCTGACCCA
TCATGCCCATAAATGCCCAGATCTTGTATATTTGCAAAGGAACTGAAACC
AAATATTCATGGAAGACGGCACTGAAAAGAAAGACAATAGTAGAGGCCTG
TCTTGAGGAATATCCCATTTGGACCACAGGGATGTAGAGATGACGCACGC
ACCACCTATGAACTGGCATGTTCCATGTACGCCAGAAGGTGTCAATGTTA
TTCGCATTCCACCAATCACAATAAAAATTGCGATCTGCAAAATTCAGCAG
TTCGCCGACCGCATTAAGAAAAGAGTGGAACATTAGATAGAAAAAGCAGA
GCCAGCAAAGATGATTGGGTAGCGCAAGTTTAAGAAGTCGCTCAGTGGCT
AAGGCCACGTCCATATTGGAGAACGGAATCAGGGAGTTCCGAACCGATGG
AATGATCCATTGTTGAAACAAGGCCATAACCACATTCACTCCAATCACCA
CCTCCAATAAACGCTTCAGCAAAAAGCGTTTGCGCACGCGAGAAGTTCGC
GGGAAATTCAACTCATAGCAGAGAGTGGGCGCGCAAAGGAAGTACAGGAG
ATCCTTGTATGTGAGATTATCAGGATATTGCACCAGCTTGGAAACGTCCT
CGTCTTCTTTCCCTCCATTCAAAACTCCTTTTTTTTATTCCGCCAAAGTT
ATGCTTGGTCCACGCTCCCGCGGATTC
BO08849.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31991-PD | 1848 | mdy-RD | 987..1845 | 877..19 | 4170 | 99.4 | Minus |
CG31991-PA | 1698 | mdy-RA | 837..1695 | 877..19 | 4170 | 99.4 | Minus |
CG31991-PB | 1698 | mdy-RB | 837..1695 | 877..19 | 4170 | 99.4 | Minus |
CG31991-PC | 1698 | mdy-RC | 837..1695 | 877..19 | 4170 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:24:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdy-RE | 2309 | CG31991-RE | 1200..2058 | 877..19 | 4220 | 99.4 | Minus |
mdy-RC | 2337 | CG31991-RC | 1228..2086 | 877..19 | 4220 | 99.4 | Minus |
mdy-RB | 2017 | CG31991-RB | 908..1766 | 877..19 | 4220 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:24:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16825779..16826089 | 833..523 | 1525 | 99.4 | Minus |
2L | 23513712 | 2L | 16826149..16826424 | 523..248 | 1380 | 100 | Minus |
2L | 23513712 | 2L | 16826482..16826713 | 250..19 | 1160 | 100 | Minus |
2L | 23513712 | 2L | 16825679..16825718 | 877..838 | 185 | 97.5 | Minus |
Blast to na_te.dros performed on 2015-02-01 07:24:14 has no hits.
BO08849.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:06 Download gff for
BO08849.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mdy-PC | 837..1698 | 18..877 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:52:48 Download gff for
BO08849.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31991-PC | 837..1698 | 18..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:14:07 Download gff for
BO08849.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mdy-RA | 981..1847 | 9..877 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:43:37 Download gff for
BO08849.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mdy-RB | 908..1774 | 9..877 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:43:37 Download gff for
BO08849.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16825779..16826089 | 523..833 | 99 | -> | Minus |
2L | 16826150..16826422 | 250..522 | 100 | -> | Minus |
2L | 16826483..16826716 | 18..249 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:14:07 Download gff for
BO08849.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16825779..16826089 | 523..833 | 99 | -> | Minus |
arm_2L | 16826150..16826422 | 250..522 | 100 | -> | Minus |
arm_2L | 16826483..16826716 | 18..249 | 99 | -> | Minus |
BO08849.5prime Sequence
784 bp (782 high quality bases) assembled on 2006-01-09
> BO08849.5prime
GAAGTTATCAGTCGACATGACCACCAATAAGGATCCCCAAGATAAGGAGC
CCGGGAAAGCAGAACAACCGACCAAGAATAGCGGATCCAGCGGTGTGGGT
ATCATGAAGCGCTTGAGAAGATCGGCGTCCGCCACAGAGCATAATCTTAG
CAGTCTGCGAAACCGCAAGTCAACACAAAATCTATTCGATCAGCACGGGA
ATCCCATAGATCTGCGACAGTATCGTAAAGTTTTGGATAAGGATGAAAAT
GGTAATGGAACCAACGGATCCGAGAAGAAGCTTAGATACAGGAGAACACA
AAGTGTGACTCGTGCTGAGGAGATTTCCAATAAAGAGGAGAAGCAGAGAA
GAGCTCAGCCTGGCAGACCAATCCATCGGCCAAGAGATTCTCTGTTTTCT
TGGAGCTCTGGATTTACCAATTTTTCTGGACTGGTGAACTGGGGATTTCT
ACTGCTCTGCATTGGAGGTCTGCGTTTGGGCTTGGAGAATCTCCTAAAGT
ATGGCATTCGCATCAATCCACTGGATTGGTTCTTCTTCATAAGCGGACAC
AACGAAGGCGAAGGACATAACGCCCTAATCCTGAGCATTTACTCTTTAGT
GCATATCTCGCTCTGTTTGGCTGTGGAGAAGGGTCTAGCCATGGAAATAA
TTGCAGAGGGCTTGGGCTTGTTCATCCAGATAGTGAACATTGTTGTCTTG
GTTTGCCTACCGGTGGTAACAATTCACCTAAAAGGACATGCTTTTAGTTT
GATGGGCGCTTCAACAGTTTGCTTCTTTTACTCT
BO08849.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31991-PD | 1848 | mdy-RD | 150..918 | 16..784 | 3845 | 100 | Plus |
CG31991-PA | 1698 | mdy-RA | 1..768 | 17..784 | 3840 | 100 | Plus |
CG31991-PB | 1698 | mdy-RB | 1..768 | 17..784 | 3840 | 100 | Plus |
CG31991-PC | 1698 | mdy-RC | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:33:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdy-RE | 2309 | CG31991-RE | 363..1131 | 16..784 | 3845 | 100 | Plus |
mdy-RC | 2337 | CG31991-RC | 391..1159 | 16..784 | 3845 | 100 | Plus |
mdy-RB | 2017 | CG31991-RB | 71..839 | 16..784 | 3845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:33:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16820122..16820475 | 16..369 | 1770 | 100 | Plus |
2L | 23513712 | 2L | 16820531..16820662 | 370..501 | 660 | 100 | Plus |
2L | 23513712 | 2L | 16825409..16825518 | 643..752 | 550 | 100 | Plus |
2L | 23513712 | 2L | 16820718..16820809 | 499..590 | 460 | 100 | Plus |
2L | 23513712 | 2L | 16820878..16820931 | 591..644 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:33:20 has no hits.
BO08849.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:07 Download gff for
BO08849.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mdy-PD | 144..918 | 9..784 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:52:50 Download gff for
BO08849.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31991-PD | 144..918 | 9..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:41:16 Download gff for
BO08849.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mdy-RA | 138..912 | 9..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:23 Download gff for
BO08849.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mdy-RB | 65..839 | 9..784 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:23 Download gff for
BO08849.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16825410..16825518 | 644..752 | 100 | -> | Plus |
2L | 16825579..16825610 | 753..784 | 100 | | Plus |
2L | 16820116..16820475 | 9..369 | 99 | -> | Plus |
2L | 16820531..16820659 | 370..498 | 100 | -> | Plus |
2L | 16820718..16820809 | 499..590 | 100 | -> | Plus |
2L | 16820878..16820930 | 591..643 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:41:16 Download gff for
BO08849.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16820116..16820475 | 9..369 | 99 | -> | Plus |
arm_2L | 16820531..16820659 | 370..498 | 100 | -> | Plus |
arm_2L | 16820718..16820809 | 499..590 | 100 | -> | Plus |
arm_2L | 16820878..16820930 | 591..643 | 100 | -> | Plus |
arm_2L | 16825410..16825518 | 644..752 | 100 | -> | Plus |
arm_2L | 16825579..16825610 | 753..784 | 100 | | Plus |
BO08849.complete Sequence
1729 bp assembled on 2007-10-05
GenBank Submission: FJ631288
> BO08849.complete
GAAGTTATCAGTCGACATGACCACCAATAAGGATCCCCAAGATAAGGAGC
CCGGGAAAGCAGAACAACCGACCAAGAATAGCGGATCCAGCGGTGTGGGT
ATCATGAAGCGCTTGAGAAGATCGGCGTCCGCCACAGAGCATAATCTTAG
CAGTCTGCGAAACCGCAAGTCAACACAAAATCTATTCGATCAGCACGGGA
ATCCCATAGATCTGCGACAGTATCGTAAAGTTTTGGATAAGGATGAAAAT
GGTAATGGAACCAACGGATCCGAGAAGAAGCTTAGATACAGGAGAACACA
AAGTGTGACTCGTGCTGAGGAGATTTCCAATAAAGAGGAGAAGCAGAGAA
GAGCTCAGCCTGGCAGACCAATCCATCGGCCAAGAGATTCTCTGTTTTCT
TGGAGCTCTGGATTTACCAATTTTTCTGGACTGGTGAACTGGGGATTTCT
ACTGCTCTGCATTGGAGGTCTGCGTTTGGGCTTGGAGAATCTCCTAAAGT
ATGGCATTCGCATCAATCCACTGGATTGGTTCTTCTTCATAAGCGGACAC
AACGAAGGCGAAGGACATAACGCCCTAATCCTGAGCATTTACTCTTTAGT
GCATATCTCGCTCTGTTTGGCTGTGGAGAAGGGTCTAGCCATGGAAATAA
TTGCAGAGGGCTTGGGCTTGTTCATCCAGATAGTGAACATTGTTGTCTTG
GTTTGCCTACCGGTGGTAACAATTCACCTAAAAGGACATGCTTTTAGTTT
GATGGGCGCTTCAACAGTTTGCTTCTTTTACTCTGTGTTGTTCCTAAAAC
TATGGTCCTATGTGCAGACGAATATGTGGTGCCGTCAGACTTATTATCAA
AAGAATCCGCGGGAGCGTCGACCAAGCATAACTTTGGCGGAACTAAAAAA
AGGAGTTTTGAATGGAGGTGAAGAAGACGAGGACGTTTCCAAGCTGGTGC
AATATCCTGATAATCTCACATACAAGGATCTCCTGTACTTCCTTTGCGCG
CCCACTCTCTGCTATGAGTTGAATTTCCCGCGAACTTCTCGCGTGCGCAA
ACGCTTTTTGCTGAAGCGTTTATTGGAGGTGGTGATTGGAGTGAATGTGG
TTATGGCCTTGTTTCAACAATGGATCATTCCATCGGTTCGGAACTCCCTG
ATTCCGTTCTCCAATATGGACGTGGCCTTAGCCACTGAGCGACTTCTTAA
ACTTGCGCTACCCAATCATCTTTGCTGGCTCTGCTTTTTCTATCTAATGT
TCCACTCTTTTCTTAATGCGGTCGGCGAACTGCTGAATTTTGCAGATCGC
AATTTTTATTGTGATTGGTGGAATGCGAATAACATTGACACCTTCTGGCG
TACATGGAACATGCCAGTTCATAGGTGGTGCGTGCGTCATCTCTACATCC
CTGTGGTCCAAATGGGATATTCCTCAAGACAGGCCTCTACTATTGTCTTT
CTTTTCAGTGCCGTCTTCCATGAATATTTGGTTTCAGTTCCTTTGCAAAT
ATACAAGATCTGGGCATTTATGGGCATGATGGGTCAGATTCCCCTATCGG
CCATATCCAAATCCATTGAAAAGAAACTGGGTCCCCGAATGGGCAATATA
ATCGTGTGGGCTTCCATTATTCTTGGTCAGCCTCTGTGCATAATGGCCTA
TTATCACGATTATGTCGTCCAGCATTTCAAAAACTCGCTCAACGGCACCG
ACTACAGTAGTGCAAGCTTTCTAGACCAT
BO08849.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:43:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdy-RE | 1698 | CG31991-PE | 1..1695 | 17..1711 | 8475 | 100 | Plus |
mdy-RC | 1698 | CG31991-PC | 1..1695 | 17..1711 | 8475 | 100 | Plus |
mdy-RB | 1698 | CG31991-PB | 1..1695 | 17..1711 | 8475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:44:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdy-RE | 2309 | CG31991-RE | 363..2058 | 16..1711 | 8480 | 100 | Plus |
mdy-RC | 2337 | CG31991-RC | 391..2086 | 16..1711 | 8480 | 100 | Plus |
mdy-RB | 2017 | CG31991-RB | 71..1766 | 16..1711 | 8480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:43:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16820122..16820475 | 16..369 | 1770 | 100 | Plus |
2L | 23513712 | 2L | 16825779..16826089 | 897..1207 | 1555 | 100 | Plus |
2L | 23513712 | 2L | 16826149..16826424 | 1207..1482 | 1380 | 100 | Plus |
2L | 23513712 | 2L | 16826482..16826713 | 1480..1711 | 1160 | 100 | Plus |
2L | 23513712 | 2L | 16825579..16825722 | 753..896 | 720 | 100 | Plus |
2L | 23513712 | 2L | 16820531..16820662 | 370..501 | 660 | 100 | Plus |
2L | 23513712 | 2L | 16825409..16825518 | 643..752 | 550 | 100 | Plus |
2L | 23513712 | 2L | 16820718..16820809 | 499..590 | 460 | 100 | Plus |
2L | 23513712 | 2L | 16820878..16820931 | 591..644 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:43:58 has no hits.
BO08849.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:06 Download gff for
BO08849.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mdy-RD | 144..1848 | 9..1712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:18:08 Download gff for
BO08849.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mdy-RB | 60..1769 | 9..1721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:31 Download gff for
BO08849.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mdy-RA | 145..1839 | 17..1713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:06 Download gff for
BO08849.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mdy-RB | 60..1769 | 9..1721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:32 Download gff for
BO08849.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mdy-RB | 72..1766 | 17..1713 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:32 Download gff for
BO08849.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16825779..16826089 | 897..1207 | 100 | -> | Plus |
2L | 16826150..16826422 | 1208..1480 | 100 | -> | Plus |
2L | 16826483..16826713 | 1481..1713 | 99 | | Plus |
2L | 16820123..16820475 | 17..369 | 100 | -> | Plus |
2L | 16820531..16820659 | 370..498 | 100 | -> | Plus |
2L | 16820718..16820809 | 499..590 | 100 | -> | Plus |
2L | 16820878..16820930 | 591..643 | 100 | -> | Plus |
2L | 16825410..16825518 | 644..752 | 100 | -> | Plus |
2L | 16825579..16825722 | 753..896 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:31 Download gff for
BO08849.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16826483..16826713 | 1481..1713 | 99 | | Plus |
arm_2L | 16820123..16820475 | 17..369 | 100 | -> | Plus |
arm_2L | 16820531..16820659 | 370..498 | 100 | -> | Plus |
arm_2L | 16820718..16820809 | 499..590 | 100 | -> | Plus |
arm_2L | 16820878..16820930 | 591..643 | 100 | -> | Plus |
arm_2L | 16825410..16825518 | 644..752 | 100 | -> | Plus |
arm_2L | 16825579..16825722 | 753..896 | 100 | -> | Plus |
arm_2L | 16825779..16826089 | 897..1207 | 100 | -> | Plus |
arm_2L | 16826150..16826422 | 1208..1480 | 100 | -> | Plus |
BO08849.pep Sequence
Translation from 16 to 1729
> BO08849.pep
MTTNKDPQDKEPGKAEQPTKNSGSSGVGIMKRLRRSASATEHNLSSLRNR
KSTQNLFDQHGNPIDLRQYRKVLDKDENGNGTNGSEKKLRYRRTQSVTRA
EEISNKEEKQRRAQPGRPIHRPRDSLFSWSSGFTNFSGLVNWGFLLLCIG
GLRLGLENLLKYGIRINPLDWFFFISGHNEGEGHNALILSIYSLVHISLC
LAVEKGLAMEIIAEGLGLFIQIVNIVVLVCLPVVTIHLKGHAFSLMGAST
VCFFYSVLFLKLWSYVQTNMWCRQTYYQKNPRERRPSITLAELKKGVLNG
GEEDEDVSKLVQYPDNLTYKDLLYFLCAPTLCYELNFPRTSRVRKRFLLK
RLLEVVIGVNVVMALFQQWIIPSVRNSLIPFSNMDVALATERLLKLALPN
HLCWLCFFYLMFHSFLNAVGELLNFADRNFYCDWWNANNIDTFWRTWNMP
VHRWCVRHLYIPVVQMGYSSRQASTIVFLFSAVFHEYLVSVPLQIYKIWA
FMGMMGQIPLSAISKSIEKKLGPRMGNIIVWASIILGQPLCIMAYYHDYV
VQHFKNSLNGTDYSSASFLDH
BO08849.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdy-PE | 565 | CG31991-PE | 1..565 | 1..565 | 3001 | 100 | Plus |
mdy-PC | 565 | CG31991-PC | 1..565 | 1..565 | 3001 | 100 | Plus |
mdy-PB | 565 | CG31991-PB | 1..565 | 1..565 | 3001 | 100 | Plus |
mdy-PA | 565 | CG31991-PA | 1..565 | 1..565 | 3001 | 100 | Plus |
CG8112-PB | 559 | CG8112-PB | 281..529 | 297..545 | 350 | 35.8 | Plus |