Clone BO08849 Report

Search the DGRC for BO08849

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:88
Well:49
Vector:pDNR-Dual
Associated Gene/Transcriptmdy-RA
Protein status:BO08849.pep: validated not full length
Sequenced Size:1729

Clone Sequence Records

BO08849.3prime Sequence

877 bp (746 high quality bases) assembled on 2006-01-09

> BO08849.3prime
ATGGTCTAGAAAGCTTGCACTACTGTAGTCGGTGCCGTTGAGCGAGTTTT
TGAAATGCTGGACGACATAATCGTGATAATAGGCCATTATGCACAGAGGC
TGACCAAGAATAATGGAAGCCCACACGATTATATTGCCCATTCGGGGACC
CAGTTTCTTTTCAATGGATTTGGATATGGCCGATAGGGGAATCTGACCCA
TCATGCCCATAAATGCCCAGATCTTGTATATTTGCAAAGGAACTGAAACC
AAATATTCATGGAAGACGGCACTGAAAAGAAAGACAATAGTAGAGGCCTG
TCTTGAGGAATATCCCATTTGGACCACAGGGATGTAGAGATGACGCACGC
ACCACCTATGAACTGGCATGTTCCATGTACGCCAGAAGGTGTCAATGTTA
TTCGCATTCCACCAATCACAATAAAAATTGCGATCTGCAAAATTCAGCAG
TTCGCCGACCGCATTAAGAAAAGAGTGGAACATTAGATAGAAAAAGCAGA
GCCAGCAAAGATGATTGGGTAGCGCAAGTTTAAGAAGTCGCTCAGTGGCT
AAGGCCACGTCCATATTGGAGAACGGAATCAGGGAGTTCCGAACCGATGG
AATGATCCATTGTTGAAACAAGGCCATAACCACATTCACTCCAATCACCA
CCTCCAATAAACGCTTCAGCAAAAAGCGTTTGCGCACGCGAGAAGTTCGC
GGGAAATTCAACTCATAGCAGAGAGTGGGCGCGCAAAGGAAGTACAGGAG
ATCCTTGTATGTGAGATTATCAGGATATTGCACCAGCTTGGAAACGTCCT
CGTCTTCTTTCCCTCCATTCAAAACTCCTTTTTTTTATTCCGCCAAAGTT
ATGCTTGGTCCACGCTCCCGCGGATTC

BO08849.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG31991-PD 1848 mdy-RD 987..1845 877..19 4170 99.4 Minus
CG31991-PA 1698 mdy-RA 837..1695 877..19 4170 99.4 Minus
CG31991-PB 1698 mdy-RB 837..1695 877..19 4170 99.4 Minus
CG31991-PC 1698 mdy-RC 837..1695 877..19 4170 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:24:17
Subject Length Description Subject Range Query Range Score Percent Strand
mdy-RE 2309 CG31991-RE 1200..2058 877..19 4220 99.4 Minus
mdy-RC 2337 CG31991-RC 1228..2086 877..19 4220 99.4 Minus
mdy-RB 2017 CG31991-RB 908..1766 877..19 4220 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:24:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16825779..16826089 833..523 1525 99.4 Minus
2L 23513712 2L 16826149..16826424 523..248 1380 100 Minus
2L 23513712 2L 16826482..16826713 250..19 1160 100 Minus
2L 23513712 2L 16825679..16825718 877..838 185 97.5 Minus
Blast to na_te.dros performed on 2015-02-01 07:24:14 has no hits.

BO08849.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:06 Download gff for BO08849.3prime
Subject Subject Range Query Range Percent Splice Strand
mdy-PC 837..1698 18..877 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:52:48 Download gff for BO08849.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31991-PC 837..1698 18..877 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:14:07 Download gff for BO08849.3prime
Subject Subject Range Query Range Percent Splice Strand
mdy-RA 981..1847 9..877 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:43:37 Download gff for BO08849.3prime
Subject Subject Range Query Range Percent Splice Strand
mdy-RB 908..1774 9..877 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:43:37 Download gff for BO08849.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16825779..16826089 523..833 99 -> Minus
2L 16826150..16826422 250..522 100 -> Minus
2L 16826483..16826716 18..249 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:14:07 Download gff for BO08849.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16825779..16826089 523..833 99 -> Minus
arm_2L 16826150..16826422 250..522 100 -> Minus
arm_2L 16826483..16826716 18..249 99 -> Minus

BO08849.5prime Sequence

784 bp (782 high quality bases) assembled on 2006-01-09

> BO08849.5prime
GAAGTTATCAGTCGACATGACCACCAATAAGGATCCCCAAGATAAGGAGC
CCGGGAAAGCAGAACAACCGACCAAGAATAGCGGATCCAGCGGTGTGGGT
ATCATGAAGCGCTTGAGAAGATCGGCGTCCGCCACAGAGCATAATCTTAG
CAGTCTGCGAAACCGCAAGTCAACACAAAATCTATTCGATCAGCACGGGA
ATCCCATAGATCTGCGACAGTATCGTAAAGTTTTGGATAAGGATGAAAAT
GGTAATGGAACCAACGGATCCGAGAAGAAGCTTAGATACAGGAGAACACA
AAGTGTGACTCGTGCTGAGGAGATTTCCAATAAAGAGGAGAAGCAGAGAA
GAGCTCAGCCTGGCAGACCAATCCATCGGCCAAGAGATTCTCTGTTTTCT
TGGAGCTCTGGATTTACCAATTTTTCTGGACTGGTGAACTGGGGATTTCT
ACTGCTCTGCATTGGAGGTCTGCGTTTGGGCTTGGAGAATCTCCTAAAGT
ATGGCATTCGCATCAATCCACTGGATTGGTTCTTCTTCATAAGCGGACAC
AACGAAGGCGAAGGACATAACGCCCTAATCCTGAGCATTTACTCTTTAGT
GCATATCTCGCTCTGTTTGGCTGTGGAGAAGGGTCTAGCCATGGAAATAA
TTGCAGAGGGCTTGGGCTTGTTCATCCAGATAGTGAACATTGTTGTCTTG
GTTTGCCTACCGGTGGTAACAATTCACCTAAAAGGACATGCTTTTAGTTT
GATGGGCGCTTCAACAGTTTGCTTCTTTTACTCT

BO08849.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG31991-PD 1848 mdy-RD 150..918 16..784 3845 100 Plus
CG31991-PA 1698 mdy-RA 1..768 17..784 3840 100 Plus
CG31991-PB 1698 mdy-RB 1..768 17..784 3840 100 Plus
CG31991-PC 1698 mdy-RC 1..768 17..784 3840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
mdy-RE 2309 CG31991-RE 363..1131 16..784 3845 100 Plus
mdy-RC 2337 CG31991-RC 391..1159 16..784 3845 100 Plus
mdy-RB 2017 CG31991-RB 71..839 16..784 3845 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:33:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16820122..16820475 16..369 1770 100 Plus
2L 23513712 2L 16820531..16820662 370..501 660 100 Plus
2L 23513712 2L 16825409..16825518 643..752 550 100 Plus
2L 23513712 2L 16820718..16820809 499..590 460 100 Plus
2L 23513712 2L 16820878..16820931 591..644 270 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:33:20 has no hits.

BO08849.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:07 Download gff for BO08849.5prime
Subject Subject Range Query Range Percent Splice Strand
mdy-PD 144..918 9..784 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:52:50 Download gff for BO08849.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31991-PD 144..918 9..784 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:41:16 Download gff for BO08849.5prime
Subject Subject Range Query Range Percent Splice Strand
mdy-RA 138..912 9..784 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:23 Download gff for BO08849.5prime
Subject Subject Range Query Range Percent Splice Strand
mdy-RB 65..839 9..784 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:23 Download gff for BO08849.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16825410..16825518 644..752 100 -> Plus
2L 16825579..16825610 753..784 100   Plus
2L 16820116..16820475 9..369 99 -> Plus
2L 16820531..16820659 370..498 100 -> Plus
2L 16820718..16820809 499..590 100 -> Plus
2L 16820878..16820930 591..643 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:41:16 Download gff for BO08849.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16820116..16820475 9..369 99 -> Plus
arm_2L 16820531..16820659 370..498 100 -> Plus
arm_2L 16820718..16820809 499..590 100 -> Plus
arm_2L 16820878..16820930 591..643 100 -> Plus
arm_2L 16825410..16825518 644..752 100 -> Plus
arm_2L 16825579..16825610 753..784 100   Plus

BO08849.complete Sequence

1729 bp assembled on 2007-10-05

GenBank Submission: FJ631288

> BO08849.complete
GAAGTTATCAGTCGACATGACCACCAATAAGGATCCCCAAGATAAGGAGC
CCGGGAAAGCAGAACAACCGACCAAGAATAGCGGATCCAGCGGTGTGGGT
ATCATGAAGCGCTTGAGAAGATCGGCGTCCGCCACAGAGCATAATCTTAG
CAGTCTGCGAAACCGCAAGTCAACACAAAATCTATTCGATCAGCACGGGA
ATCCCATAGATCTGCGACAGTATCGTAAAGTTTTGGATAAGGATGAAAAT
GGTAATGGAACCAACGGATCCGAGAAGAAGCTTAGATACAGGAGAACACA
AAGTGTGACTCGTGCTGAGGAGATTTCCAATAAAGAGGAGAAGCAGAGAA
GAGCTCAGCCTGGCAGACCAATCCATCGGCCAAGAGATTCTCTGTTTTCT
TGGAGCTCTGGATTTACCAATTTTTCTGGACTGGTGAACTGGGGATTTCT
ACTGCTCTGCATTGGAGGTCTGCGTTTGGGCTTGGAGAATCTCCTAAAGT
ATGGCATTCGCATCAATCCACTGGATTGGTTCTTCTTCATAAGCGGACAC
AACGAAGGCGAAGGACATAACGCCCTAATCCTGAGCATTTACTCTTTAGT
GCATATCTCGCTCTGTTTGGCTGTGGAGAAGGGTCTAGCCATGGAAATAA
TTGCAGAGGGCTTGGGCTTGTTCATCCAGATAGTGAACATTGTTGTCTTG
GTTTGCCTACCGGTGGTAACAATTCACCTAAAAGGACATGCTTTTAGTTT
GATGGGCGCTTCAACAGTTTGCTTCTTTTACTCTGTGTTGTTCCTAAAAC
TATGGTCCTATGTGCAGACGAATATGTGGTGCCGTCAGACTTATTATCAA
AAGAATCCGCGGGAGCGTCGACCAAGCATAACTTTGGCGGAACTAAAAAA
AGGAGTTTTGAATGGAGGTGAAGAAGACGAGGACGTTTCCAAGCTGGTGC
AATATCCTGATAATCTCACATACAAGGATCTCCTGTACTTCCTTTGCGCG
CCCACTCTCTGCTATGAGTTGAATTTCCCGCGAACTTCTCGCGTGCGCAA
ACGCTTTTTGCTGAAGCGTTTATTGGAGGTGGTGATTGGAGTGAATGTGG
TTATGGCCTTGTTTCAACAATGGATCATTCCATCGGTTCGGAACTCCCTG
ATTCCGTTCTCCAATATGGACGTGGCCTTAGCCACTGAGCGACTTCTTAA
ACTTGCGCTACCCAATCATCTTTGCTGGCTCTGCTTTTTCTATCTAATGT
TCCACTCTTTTCTTAATGCGGTCGGCGAACTGCTGAATTTTGCAGATCGC
AATTTTTATTGTGATTGGTGGAATGCGAATAACATTGACACCTTCTGGCG
TACATGGAACATGCCAGTTCATAGGTGGTGCGTGCGTCATCTCTACATCC
CTGTGGTCCAAATGGGATATTCCTCAAGACAGGCCTCTACTATTGTCTTT
CTTTTCAGTGCCGTCTTCCATGAATATTTGGTTTCAGTTCCTTTGCAAAT
ATACAAGATCTGGGCATTTATGGGCATGATGGGTCAGATTCCCCTATCGG
CCATATCCAAATCCATTGAAAAGAAACTGGGTCCCCGAATGGGCAATATA
ATCGTGTGGGCTTCCATTATTCTTGGTCAGCCTCTGTGCATAATGGCCTA
TTATCACGATTATGTCGTCCAGCATTTCAAAAACTCGCTCAACGGCACCG
ACTACAGTAGTGCAAGCTTTCTAGACCAT

BO08849.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
mdy-RE 1698 CG31991-PE 1..1695 17..1711 8475 100 Plus
mdy-RC 1698 CG31991-PC 1..1695 17..1711 8475 100 Plus
mdy-RB 1698 CG31991-PB 1..1695 17..1711 8475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:44:00
Subject Length Description Subject Range Query Range Score Percent Strand
mdy-RE 2309 CG31991-RE 363..2058 16..1711 8480 100 Plus
mdy-RC 2337 CG31991-RC 391..2086 16..1711 8480 100 Plus
mdy-RB 2017 CG31991-RB 71..1766 16..1711 8480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16820122..16820475 16..369 1770 100 Plus
2L 23513712 2L 16825779..16826089 897..1207 1555 100 Plus
2L 23513712 2L 16826149..16826424 1207..1482 1380 100 Plus
2L 23513712 2L 16826482..16826713 1480..1711 1160 100 Plus
2L 23513712 2L 16825579..16825722 753..896 720 100 Plus
2L 23513712 2L 16820531..16820662 370..501 660 100 Plus
2L 23513712 2L 16825409..16825518 643..752 550 100 Plus
2L 23513712 2L 16820718..16820809 499..590 460 100 Plus
2L 23513712 2L 16820878..16820931 591..644 270 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:43:58 has no hits.

BO08849.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:06 Download gff for BO08849.complete
Subject Subject Range Query Range Percent Splice Strand
mdy-RD 144..1848 9..1712 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:18:08 Download gff for BO08849.complete
Subject Subject Range Query Range Percent Splice Strand
mdy-RB 60..1769 9..1721 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:31 Download gff for BO08849.complete
Subject Subject Range Query Range Percent Splice Strand
mdy-RA 145..1839 17..1713 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:06 Download gff for BO08849.complete
Subject Subject Range Query Range Percent Splice Strand
mdy-RB 60..1769 9..1721 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:32 Download gff for BO08849.complete
Subject Subject Range Query Range Percent Splice Strand
mdy-RB 72..1766 17..1713 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:32 Download gff for BO08849.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16825779..16826089 897..1207 100 -> Plus
2L 16826150..16826422 1208..1480 100 -> Plus
2L 16826483..16826713 1481..1713 99   Plus
2L 16820123..16820475 17..369 100 -> Plus
2L 16820531..16820659 370..498 100 -> Plus
2L 16820718..16820809 499..590 100 -> Plus
2L 16820878..16820930 591..643 100 -> Plus
2L 16825410..16825518 644..752 100 -> Plus
2L 16825579..16825722 753..896 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:31 Download gff for BO08849.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16826483..16826713 1481..1713 99   Plus
arm_2L 16820123..16820475 17..369 100 -> Plus
arm_2L 16820531..16820659 370..498 100 -> Plus
arm_2L 16820718..16820809 499..590 100 -> Plus
arm_2L 16820878..16820930 591..643 100 -> Plus
arm_2L 16825410..16825518 644..752 100 -> Plus
arm_2L 16825579..16825722 753..896 100 -> Plus
arm_2L 16825779..16826089 897..1207 100 -> Plus
arm_2L 16826150..16826422 1208..1480 100 -> Plus

BO08849.pep Sequence

Translation from 16 to 1729

> BO08849.pep
MTTNKDPQDKEPGKAEQPTKNSGSSGVGIMKRLRRSASATEHNLSSLRNR
KSTQNLFDQHGNPIDLRQYRKVLDKDENGNGTNGSEKKLRYRRTQSVTRA
EEISNKEEKQRRAQPGRPIHRPRDSLFSWSSGFTNFSGLVNWGFLLLCIG
GLRLGLENLLKYGIRINPLDWFFFISGHNEGEGHNALILSIYSLVHISLC
LAVEKGLAMEIIAEGLGLFIQIVNIVVLVCLPVVTIHLKGHAFSLMGAST
VCFFYSVLFLKLWSYVQTNMWCRQTYYQKNPRERRPSITLAELKKGVLNG
GEEDEDVSKLVQYPDNLTYKDLLYFLCAPTLCYELNFPRTSRVRKRFLLK
RLLEVVIGVNVVMALFQQWIIPSVRNSLIPFSNMDVALATERLLKLALPN
HLCWLCFFYLMFHSFLNAVGELLNFADRNFYCDWWNANNIDTFWRTWNMP
VHRWCVRHLYIPVVQMGYSSRQASTIVFLFSAVFHEYLVSVPLQIYKIWA
FMGMMGQIPLSAISKSIEKKLGPRMGNIIVWASIILGQPLCIMAYYHDYV
VQHFKNSLNGTDYSSASFLDH

BO08849.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:29
Subject Length Description Subject Range Query Range Score Percent Strand
mdy-PE 565 CG31991-PE 1..565 1..565 3001 100 Plus
mdy-PC 565 CG31991-PC 1..565 1..565 3001 100 Plus
mdy-PB 565 CG31991-PB 1..565 1..565 3001 100 Plus
mdy-PA 565 CG31991-PA 1..565 1..565 3001 100 Plus
CG8112-PB 559 CG8112-PB 281..529 297..545 350 35.8 Plus