Clone Sequence Records
BO08850.3prime Sequence
881 bp (833 high quality bases) assembled on 2006-01-09
> BO08850.3prime
ATGGTCTAGAAAGCTTGCTCTGGGTCCTTCGGCTACGGCGACGGGCAGGA
CATTACCAAGACTGCTAGCAGAATGCTTTATCGCACTGTACGTGGACTCC
TTTTTGTTCTCCTCACCGGCGGGTTTGCTGAAATACCATTCCTTCTTATT
GGTCAGAAATAGCAGCATCAGGGCGGGCAGGTGTATCAGTGAAAATCGGA
ACAGCTTCCGCGAGCTCCCACTATCTGACTTTTCATGAAACTTGTACGCA
AGGTAGGCGAAGTACGCGTTCAGAGGTAGTGTTTCCAAGGCAAACCAGTA
GTTCGTGACGTCCAGTACGGGTGCCATGGCTGAAAGTCCGACAATAGCCA
CCGAATATCGCAGCGCAGTGCGGCGACAAAGACCCGGATTGGTAACGGCC
ATCATTCGGTAGCCGGCACGTGAATAATCCGGCCGGAGGTTCCACGACAG
AGCGTTGAAGTGCGGGAACTGCCACGCGTACAGCACTCCGGCTAGGATCA
TGGCGCCGGCGTCCAGGGTGGCTGCACAACCAGCCCATCCCATCAGCGGA
GGAATGGCGCCCACTATCGATCCCACCCAGGTATTGACTATGCTGATACG
CTTCATCGGTGTGTATATCGTGGTGTAGAGGAACAGGTTACCCGCTCCCA
GCGCCGCCGTCAATCCATTTACTCCGAAATACAGCATACTTAAGCCGGCA
GTTGCCGACACCGCGGCGAAGGTAACTGCATGCAGTGGTGTCATTTGCCC
CGTGACGAGCACCCGGTTCTTTGTCCTCGACATCTGCGAATCGAAAGGAA
CTTCGTGATACTGATTAATGGCATTCGCCGCAGCCGAAACGAGTCCTGTG
CCCAGGGTGCACATCGCAAACGTTGTGGGAT
BO08850.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5037-PA | 1176 | CG5037-RA | 311..1173 | 881..19 | 4315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:58:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5037-RA | 1473 | CG5037-RA | 450..1312 | 881..19 | 4315 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:58:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10332042..10332674 | 881..249 | 3165 | 100 | Minus |
2L | 23513712 | 2L | 10332738..10332968 | 249..19 | 1155 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:58:26 has no hits.
BO08850.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:08 Download gff for
BO08850.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5037-PA | 311..1176 | 18..881 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:52:51 Download gff for
BO08850.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5037-PA | 311..1176 | 18..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:39:11 Download gff for
BO08850.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5037-RA | 450..1312 | 19..881 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:01:09 Download gff for
BO08850.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5037-RA | 450..1312 | 19..881 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:01:09 Download gff for
BO08850.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10332042..10332674 | 249..881 | 100 | -> | Minus |
2L | 10332739..10332968 | 19..248 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:39:11 Download gff for
BO08850.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10332042..10332674 | 249..881 | 100 | -> | Minus |
arm_2L | 10332739..10332968 | 19..248 | 100 | | Minus |
BO08850.5prime Sequence
924 bp (798 high quality bases) assembled on 2006-01-09
> BO08850.5prime
GAAGTTATCAGTCGACATGATATTATTCAAAGGAATTCGGCGGGTGCAAT
CCCAGCTAAGAACGCCGGTTGATTTGGTGCTCATTCGGTACTCCACTGCA
GCAACGATAGCTTCCCAAGATGACAAAGGTGTCACTACAGCGTCGCCAGT
ATCCCAGGCGGGAAAGGTCCAGCATTTACCCGATAGTCAAATTACCTGGA
TGCCTAGTCCGTACACCATGCCCGGAAAAACTCTTAGCCAGTACAAGAAG
CTATCCAAGTTCCGGCTGACATCGCTGGTGGTCATTACAACGATGGGCGG
CTATGCCATGGCGCCAGCTGCTTTCGATCCCACAACGTTTGCGATGTGCA
CCCTGGGCACAGGACTCGTTTCGGCTGCGGCGAATGCCATTAATCAGTAT
CACGAAGTTCCTTTCGATTCGCAGATGTCGAGGACAAAGAACCGGGTGCT
CGTCACGGGGCAAATGACACCACTGCATGCAGTTACCTTCGCCGCGGTGT
CGGCAACTGCCGGCTTAAGTATGCTGTATTTCGGAGTAAATGGATTGACG
GCGGCGCTGGGAGCGGGTAACCTGTTCCTCTACACCACGATATACACACC
GATGAAGCGTATCAGCATAGTCAATACCTGGGTGGGATCGATAGTGGGCG
CCATTCCTCCGCTGATGGGATGGGCTGGTTGTGCAGCCACCCTGGACGCC
GGCGCCATGATCCTAGCCGGAGTGCTGTACGCGTGGCAGTTCCCGCACTT
CAACGCTCTGTCGTGGAACCTCCGGCCGGATTATTCACGTGCCGGCTACC
GAATGATGGCCGTTACCAATCCGGGTCTTTGTCGCCGCACTGCGCTGCGA
TATTCGGTGGCTATTGTCGGACTTTCAGCCATGGCACCCGTACTGGACGT
CACGAACTACTGGTTTGCCTTGGA
BO08850.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5037-PA | 1176 | CG5037-RA | 1..908 | 17..924 | 4540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:12:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5037-RA | 1473 | CG5037-RA | 140..1047 | 17..924 | 4540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:12:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10331988..10332639 | 273..924 | 3260 | 100 | Plus |
2L | 23513712 | 2L | 10331742..10331930 | 84..272 | 930 | 99.5 | Plus |
2L | 23513712 | 2L | 10331610..10331681 | 17..88 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:12:04 has no hits.
BO08850.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:09 Download gff for
BO08850.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5037-PA | 1..907 | 17..923 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:52:53 Download gff for
BO08850.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5037-PA | 1..907 | 17..923 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:28:33 Download gff for
BO08850.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5037-RA | 140..1046 | 17..923 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:33:25 Download gff for
BO08850.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5037-RA | 140..1046 | 17..923 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:33:25 Download gff for
BO08850.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10331610..10331681 | 17..88 | 100 | -> | Plus |
2L | 10331747..10331930 | 89..272 | 100 | -> | Plus |
2L | 10331988..10332638 | 273..923 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:28:33 Download gff for
BO08850.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10331747..10331930 | 89..272 | 100 | -> | Plus |
arm_2L | 10331610..10331681 | 17..88 | 100 | -> | Plus |
arm_2L | 10331988..10332638 | 273..923 | 100 | | Plus |
BO08850.complete Sequence
1207 bp (1207 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631289
> BO08850.complete
GAAGTTATCAGTCGACATGATATTATTCAAAGGAATTCGGCGGGTGCAAT
CCCAGCTAAGAACGCCGGTTGATTTGGTGCTCATTCGGTACTCCACTGCA
GCAACGATAGCTTCCCAAGATGACAAAGGTGTCACTACAGCGTCGCCAGT
ATCCCAGGCGGGAAAGGTCCAGCATTTACCCGATAGTCAAATTACCTGGA
TGCCTAGTCCGTACACCATGCCCGGAAAAACTCTTAGCCAGTACAAGAAG
CTATCCAAGTTCCGGCTGACATCGCTGGTGGTCATTACAACGATGGGCGG
CTATGCCATGGCGCCAGCTGCTTTCGATCCCACAACGTTTGCGATGTGCA
CCCTGGGCACAGGACTCGTTTCGGCTGCGGCGAATGCCATTAATCAGTAT
CACGAAGTTCCTTTCGATTCGCAGATGTCGAGGACAAAGAACCGGGTGCT
CGTCACGGGGCAAATGACACCACTGCATGCAGTTACCTTCGCCGCGGTGT
CGGCAACTGCCGGCTTAAGTATGCTGTATTTCGGAGTAAATGGATTGACG
GCGGCGCTGGGAGCGGGTAACCTGTTCCTCTACACCACGATATACACACC
GATGAAGCGTATCAGCATAGTCAATACCTGGGTGGGATCGATAGTGGGCG
CCATTCCTCCGCTGATGGGATGGGCTGGTTGTGCAGCCACCCTGGACGCC
GGCGCCATGATCCTAGCCGGAGTGCTGTACGCGTGGCAGTTCCCGCACTT
CAACGCTCTGTCGTGGAACCTCCGGCCGGATTATTCACGTGCCGGCTACC
GAATGATGGCCGTTACCAATCCGGGTCTTTGTCGCCGCACTGCGCTGCGA
TATTCGGTGGCTATTGTCGGACTTTCAGCCATGGCACCCGTACTGGACGT
CACGAACTACTGGTTTGCCTTGGAAACACTACCTCTGAACGCGTACTTCG
CCTACCTTGCGTACAAGTTTCATGAAAAGTCAGATAGTGGGAGCTCGCGG
AAGCTGTTCCGATTTTCACTGATACACCTGCCCGCCCTGATGCTGCTATT
TCTGACCAATAAGAAGGAATGGTATTTCAGCAAACCCGCCGGTGAGGAGA
ACAAAAAGGAGTCCACGTACAGTGCGATAAAGCATTCTGCTAGCAGTCTT
GGTAATGTCCTGCCCGTCGCCGTAGCCGAAGGACCCAGAGCAAGCTTTCT
AGACCAT
BO08850.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:05:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5037-RA | 1176 | CG5037-PA | 1..1173 | 17..1189 | 5865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5037-RA | 1473 | CG5037-RA | 140..1312 | 17..1189 | 5865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10331988..10332674 | 273..959 | 3435 | 100 | Plus |
2L | 23513712 | 2L | 10332738..10332968 | 959..1189 | 1155 | 100 | Plus |
2L | 23513712 | 2L | 10331742..10331930 | 84..272 | 930 | 99.5 | Plus |
2L | 23513712 | 2L | 10331610..10331681 | 17..88 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:05:45 has no hits.
BO08850.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:45 Download gff for
BO08850.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5037-RA | 1..1176 | 17..1190 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:58 Download gff for
BO08850.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5037-RA | 148..1320 | 17..1189 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:38:49 Download gff for
BO08850.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5037-RA | 140..1312 | 17..1191 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:46 Download gff for
BO08850.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5037-RA | 148..1320 | 17..1189 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:23 Download gff for
BO08850.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5037-RA | 140..1312 | 17..1191 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:23 Download gff for
BO08850.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10331610..10331681 | 17..88 | 100 | -> | Plus |
2L | 10331747..10331930 | 89..272 | 100 | -> | Plus |
2L | 10331988..10332674 | 273..959 | 100 | -> | Plus |
2L | 10332739..10332968 | 960..1191 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:38:49 Download gff for
BO08850.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10331610..10331681 | 17..88 | 100 | -> | Plus |
arm_2L | 10331747..10331930 | 89..272 | 100 | -> | Plus |
arm_2L | 10331988..10332674 | 273..959 | 100 | -> | Plus |
arm_2L | 10332739..10332968 | 960..1191 | 99 | | Plus |
BO08850.pep Sequence
Translation from 16 to 1207
> BO08850.pep
MILFKGIRRVQSQLRTPVDLVLIRYSTAATIASQDDKGVTTASPVSQAGK
VQHLPDSQITWMPSPYTMPGKTLSQYKKLSKFRLTSLVVITTMGGYAMAP
AAFDPTTFAMCTLGTGLVSAAANAINQYHEVPFDSQMSRTKNRVLVTGQM
TPLHAVTFAAVSATAGLSMLYFGVNGLTAALGAGNLFLYTTIYTPMKRIS
IVNTWVGSIVGAIPPLMGWAGCAATLDAGAMILAGVLYAWQFPHFNALSW
NLRPDYSRAGYRMMAVTNPGLCRRTALRYSVAIVGLSAMAPVLDVTNYWF
ALETLPLNAYFAYLAYKFHEKSDSGSSRKLFRFSLIHLPALMLLFLTNKK
EWYFSKPAGEENKKESTYSAIKHSASSLGNVLPVAVAEGPRASFLDH
BO08850.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5037-PA | 391 | CG5037-PA | 1..391 | 1..391 | 2014 | 100 | Plus |