Clone BO08850 Report

Search the DGRC for BO08850

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:88
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptCG5037-RA
Protein status:BO08850.pep: validated full length
Sequenced Size:1207

Clone Sequence Records

BO08850.3prime Sequence

881 bp (833 high quality bases) assembled on 2006-01-09

> BO08850.3prime
ATGGTCTAGAAAGCTTGCTCTGGGTCCTTCGGCTACGGCGACGGGCAGGA
CATTACCAAGACTGCTAGCAGAATGCTTTATCGCACTGTACGTGGACTCC
TTTTTGTTCTCCTCACCGGCGGGTTTGCTGAAATACCATTCCTTCTTATT
GGTCAGAAATAGCAGCATCAGGGCGGGCAGGTGTATCAGTGAAAATCGGA
ACAGCTTCCGCGAGCTCCCACTATCTGACTTTTCATGAAACTTGTACGCA
AGGTAGGCGAAGTACGCGTTCAGAGGTAGTGTTTCCAAGGCAAACCAGTA
GTTCGTGACGTCCAGTACGGGTGCCATGGCTGAAAGTCCGACAATAGCCA
CCGAATATCGCAGCGCAGTGCGGCGACAAAGACCCGGATTGGTAACGGCC
ATCATTCGGTAGCCGGCACGTGAATAATCCGGCCGGAGGTTCCACGACAG
AGCGTTGAAGTGCGGGAACTGCCACGCGTACAGCACTCCGGCTAGGATCA
TGGCGCCGGCGTCCAGGGTGGCTGCACAACCAGCCCATCCCATCAGCGGA
GGAATGGCGCCCACTATCGATCCCACCCAGGTATTGACTATGCTGATACG
CTTCATCGGTGTGTATATCGTGGTGTAGAGGAACAGGTTACCCGCTCCCA
GCGCCGCCGTCAATCCATTTACTCCGAAATACAGCATACTTAAGCCGGCA
GTTGCCGACACCGCGGCGAAGGTAACTGCATGCAGTGGTGTCATTTGCCC
CGTGACGAGCACCCGGTTCTTTGTCCTCGACATCTGCGAATCGAAAGGAA
CTTCGTGATACTGATTAATGGCATTCGCCGCAGCCGAAACGAGTCCTGTG
CCCAGGGTGCACATCGCAAACGTTGTGGGAT

BO08850.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5037-PA 1176 CG5037-RA 311..1173 881..19 4315 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:58:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5037-RA 1473 CG5037-RA 450..1312 881..19 4315 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10332042..10332674 881..249 3165 100 Minus
2L 23513712 2L 10332738..10332968 249..19 1155 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:58:26 has no hits.

BO08850.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:08 Download gff for BO08850.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5037-PA 311..1176 18..881 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:52:51 Download gff for BO08850.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5037-PA 311..1176 18..881 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:39:11 Download gff for BO08850.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5037-RA 450..1312 19..881 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:01:09 Download gff for BO08850.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5037-RA 450..1312 19..881 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:01:09 Download gff for BO08850.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10332042..10332674 249..881 100 -> Minus
2L 10332739..10332968 19..248 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:39:11 Download gff for BO08850.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10332042..10332674 249..881 100 -> Minus
arm_2L 10332739..10332968 19..248 100   Minus

BO08850.5prime Sequence

924 bp (798 high quality bases) assembled on 2006-01-09

> BO08850.5prime
GAAGTTATCAGTCGACATGATATTATTCAAAGGAATTCGGCGGGTGCAAT
CCCAGCTAAGAACGCCGGTTGATTTGGTGCTCATTCGGTACTCCACTGCA
GCAACGATAGCTTCCCAAGATGACAAAGGTGTCACTACAGCGTCGCCAGT
ATCCCAGGCGGGAAAGGTCCAGCATTTACCCGATAGTCAAATTACCTGGA
TGCCTAGTCCGTACACCATGCCCGGAAAAACTCTTAGCCAGTACAAGAAG
CTATCCAAGTTCCGGCTGACATCGCTGGTGGTCATTACAACGATGGGCGG
CTATGCCATGGCGCCAGCTGCTTTCGATCCCACAACGTTTGCGATGTGCA
CCCTGGGCACAGGACTCGTTTCGGCTGCGGCGAATGCCATTAATCAGTAT
CACGAAGTTCCTTTCGATTCGCAGATGTCGAGGACAAAGAACCGGGTGCT
CGTCACGGGGCAAATGACACCACTGCATGCAGTTACCTTCGCCGCGGTGT
CGGCAACTGCCGGCTTAAGTATGCTGTATTTCGGAGTAAATGGATTGACG
GCGGCGCTGGGAGCGGGTAACCTGTTCCTCTACACCACGATATACACACC
GATGAAGCGTATCAGCATAGTCAATACCTGGGTGGGATCGATAGTGGGCG
CCATTCCTCCGCTGATGGGATGGGCTGGTTGTGCAGCCACCCTGGACGCC
GGCGCCATGATCCTAGCCGGAGTGCTGTACGCGTGGCAGTTCCCGCACTT
CAACGCTCTGTCGTGGAACCTCCGGCCGGATTATTCACGTGCCGGCTACC
GAATGATGGCCGTTACCAATCCGGGTCTTTGTCGCCGCACTGCGCTGCGA
TATTCGGTGGCTATTGTCGGACTTTCAGCCATGGCACCCGTACTGGACGT
CACGAACTACTGGTTTGCCTTGGA

BO08850.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5037-PA 1176 CG5037-RA 1..908 17..924 4540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:12:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5037-RA 1473 CG5037-RA 140..1047 17..924 4540 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:12:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10331988..10332639 273..924 3260 100 Plus
2L 23513712 2L 10331742..10331930 84..272 930 99.5 Plus
2L 23513712 2L 10331610..10331681 17..88 360 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:12:04 has no hits.

BO08850.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:09 Download gff for BO08850.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5037-PA 1..907 17..923 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:52:53 Download gff for BO08850.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5037-PA 1..907 17..923 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:28:33 Download gff for BO08850.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5037-RA 140..1046 17..923 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:33:25 Download gff for BO08850.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5037-RA 140..1046 17..923 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:33:25 Download gff for BO08850.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10331610..10331681 17..88 100 -> Plus
2L 10331747..10331930 89..272 100 -> Plus
2L 10331988..10332638 273..923 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:28:33 Download gff for BO08850.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10331747..10331930 89..272 100 -> Plus
arm_2L 10331610..10331681 17..88 100 -> Plus
arm_2L 10331988..10332638 273..923 100   Plus

BO08850.complete Sequence

1207 bp (1207 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ631289

> BO08850.complete
GAAGTTATCAGTCGACATGATATTATTCAAAGGAATTCGGCGGGTGCAAT
CCCAGCTAAGAACGCCGGTTGATTTGGTGCTCATTCGGTACTCCACTGCA
GCAACGATAGCTTCCCAAGATGACAAAGGTGTCACTACAGCGTCGCCAGT
ATCCCAGGCGGGAAAGGTCCAGCATTTACCCGATAGTCAAATTACCTGGA
TGCCTAGTCCGTACACCATGCCCGGAAAAACTCTTAGCCAGTACAAGAAG
CTATCCAAGTTCCGGCTGACATCGCTGGTGGTCATTACAACGATGGGCGG
CTATGCCATGGCGCCAGCTGCTTTCGATCCCACAACGTTTGCGATGTGCA
CCCTGGGCACAGGACTCGTTTCGGCTGCGGCGAATGCCATTAATCAGTAT
CACGAAGTTCCTTTCGATTCGCAGATGTCGAGGACAAAGAACCGGGTGCT
CGTCACGGGGCAAATGACACCACTGCATGCAGTTACCTTCGCCGCGGTGT
CGGCAACTGCCGGCTTAAGTATGCTGTATTTCGGAGTAAATGGATTGACG
GCGGCGCTGGGAGCGGGTAACCTGTTCCTCTACACCACGATATACACACC
GATGAAGCGTATCAGCATAGTCAATACCTGGGTGGGATCGATAGTGGGCG
CCATTCCTCCGCTGATGGGATGGGCTGGTTGTGCAGCCACCCTGGACGCC
GGCGCCATGATCCTAGCCGGAGTGCTGTACGCGTGGCAGTTCCCGCACTT
CAACGCTCTGTCGTGGAACCTCCGGCCGGATTATTCACGTGCCGGCTACC
GAATGATGGCCGTTACCAATCCGGGTCTTTGTCGCCGCACTGCGCTGCGA
TATTCGGTGGCTATTGTCGGACTTTCAGCCATGGCACCCGTACTGGACGT
CACGAACTACTGGTTTGCCTTGGAAACACTACCTCTGAACGCGTACTTCG
CCTACCTTGCGTACAAGTTTCATGAAAAGTCAGATAGTGGGAGCTCGCGG
AAGCTGTTCCGATTTTCACTGATACACCTGCCCGCCCTGATGCTGCTATT
TCTGACCAATAAGAAGGAATGGTATTTCAGCAAACCCGCCGGTGAGGAGA
ACAAAAAGGAGTCCACGTACAGTGCGATAAAGCATTCTGCTAGCAGTCTT
GGTAATGTCCTGCCCGTCGCCGTAGCCGAAGGACCCAGAGCAAGCTTTCT
AGACCAT

BO08850.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:05:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5037-RA 1176 CG5037-PA 1..1173 17..1189 5865 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5037-RA 1473 CG5037-RA 140..1312 17..1189 5865 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10331988..10332674 273..959 3435 100 Plus
2L 23513712 2L 10332738..10332968 959..1189 1155 100 Plus
2L 23513712 2L 10331742..10331930 84..272 930 99.5 Plus
2L 23513712 2L 10331610..10331681 17..88 360 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:05:45 has no hits.

BO08850.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:45 Download gff for BO08850.complete
Subject Subject Range Query Range Percent Splice Strand
CG5037-RA 1..1176 17..1190 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:58 Download gff for BO08850.complete
Subject Subject Range Query Range Percent Splice Strand
CG5037-RA 148..1320 17..1189 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:38:49 Download gff for BO08850.complete
Subject Subject Range Query Range Percent Splice Strand
CG5037-RA 140..1312 17..1191 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:46 Download gff for BO08850.complete
Subject Subject Range Query Range Percent Splice Strand
CG5037-RA 148..1320 17..1189 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:23 Download gff for BO08850.complete
Subject Subject Range Query Range Percent Splice Strand
CG5037-RA 140..1312 17..1191 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:23 Download gff for BO08850.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10331610..10331681 17..88 100 -> Plus
2L 10331747..10331930 89..272 100 -> Plus
2L 10331988..10332674 273..959 100 -> Plus
2L 10332739..10332968 960..1191 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:38:49 Download gff for BO08850.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10331610..10331681 17..88 100 -> Plus
arm_2L 10331747..10331930 89..272 100 -> Plus
arm_2L 10331988..10332674 273..959 100 -> Plus
arm_2L 10332739..10332968 960..1191 99   Plus

BO08850.pep Sequence

Translation from 16 to 1207

> BO08850.pep
MILFKGIRRVQSQLRTPVDLVLIRYSTAATIASQDDKGVTTASPVSQAGK
VQHLPDSQITWMPSPYTMPGKTLSQYKKLSKFRLTSLVVITTMGGYAMAP
AAFDPTTFAMCTLGTGLVSAAANAINQYHEVPFDSQMSRTKNRVLVTGQM
TPLHAVTFAAVSATAGLSMLYFGVNGLTAALGAGNLFLYTTIYTPMKRIS
IVNTWVGSIVGAIPPLMGWAGCAATLDAGAMILAGVLYAWQFPHFNALSW
NLRPDYSRAGYRMMAVTNPGLCRRTALRYSVAIVGLSAMAPVLDVTNYWF
ALETLPLNAYFAYLAYKFHEKSDSGSSRKLFRFSLIHLPALMLLFLTNKK
EWYFSKPAGEENKKESTYSAIKHSASSLGNVLPVAVAEGPRASFLDH

BO08850.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5037-PA 391 CG5037-PA 1..391 1..391 2014 100 Plus