Clone BO08852 Report

Search the DGRC for BO08852

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:88
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptNak-RB
Protein status:BO08852.pep: validated full length
Sequenced Size:2884

Clone Sequence Records

BO08852.3prime Sequence

922 bp (875 high quality bases) assembled on 2006-01-10

> BO08852.3prime
ATGGTCTAGAAAGCTTGCTGAGAACAAGTTGTTCCGTCGCTTGAGGGAGC
CGAACTTCTTCTCCGCCTCGAGTAACATCTTTTCGTTTCTAACCACCTCG
AAGGGAATGGTCCTGGACAGACGATCCATTTCCTGATCCGAGGGAAAGTC
CTCAAAGCTCATGTTGCTGAAGCCGGTTTTGGCAGAATTTTGAATGGTGT
TTGATTGGAAATTGCGGCCGCCTCCAGCACCTCGATTCTCATCCTGATCC
TGTTCGTCGTCGTCATCATCGTGGGACTGGTACTGCAATCGCTGGTGCTT
CTGCTTGCTGCCGGAACTAAGGGAACTGGTGGATCCAAGGGCAGCCGCGC
TTACTTTTTTGTACGAATGCCCCTTTACCTTTTGGGTGAGCTTTCCCGGC
AGAACCCTTACAGCCAGATTGGACTTCTCCTTCTTGGGTTTCGCAGGGGT
AGGTATACCGATTCCGTCTGCCACCACATCGGCATCACGCAACACCACGG
GTTCCTCCTCGTCGTCCGGTGTGAAATCTGAGCAGCGATCTTGGGAGATT
TGCACATACGCATTATCGGCAATGGGCAGCAAAGGACGCAGATGGGTAAC
GACCGCTGGTATTGGAACTGGAACGGCTGGAACGGAAACAGGGGCAGGAA
CTGGAACTGGAAGAGGTGCCTGAACTGGAATCACAGCTGCTGGTGAGGAT
TGTGGCTGGTTAATGGAGCAGGAACTGGTGCTCATGCTGGAGAAAGACGG
CACATTCACATAGACACTGCTGGTGCCACTCGACTTAGCAGTCTGGTTAT
TATTATTATTATTATAGTTCATCGGTGGCTCCGGCGTTTTGTTGATAATA
ATCGAGTGATTTATGGTCACCAGTTGTGGGGCAGACGAATTGACGGAAAC
AGATACAGGAACGGAGGCAGGA

BO08852.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG10637-PA 4467 Nak-RA 3561..4464 922..19 4520 100 Minus
CG10637-PB 2853 Nak-RB 1947..2850 922..19 4520 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
Nak-RD 5364 CG10637-RD 3890..4793 922..19 4520 100 Minus
Nak-RA 5196 CG10637-RA 3890..4793 922..19 4520 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:33:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18958303..18959206 19..922 4520 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:33:55 has no hits.

BO08852.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:12 Download gff for BO08852.3prime
Subject Subject Range Query Range Percent Splice Strand
Nak-PA 3562..4467 15..921 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:52:59 Download gff for BO08852.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10637-PB 1948..2853 15..921 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:53:42 Download gff for BO08852.3prime
Subject Subject Range Query Range Percent Splice Strand
Nak-RA 3891..4796 15..921 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:52:51 Download gff for BO08852.3prime
Subject Subject Range Query Range Percent Splice Strand
Nak-RA 3891..4796 15..921 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:52:51 Download gff for BO08852.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 18958300..18959205 15..921 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:53:42 Download gff for BO08852.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18958300..18959205 15..921 99   Plus

BO08852.5prime Sequence

891 bp (769 high quality bases) assembled on 2006-01-09

> BO08852.5prime
GAAGTTATCAGTCGACATGGGCGACGGTCAGCAGACTTTGGCTAGTGCTG
CCTCGAATCCCGGGATATATGCATCTTCAACGGCAAACTCAGCCGCGGTA
TCCATTAGCGAATTAATGAAACCAGGACAAACGGCGGTGGAAAAGCGAGT
TGAAGCCTGGAATCCGTTCGAAGAGGAGCAGCCTTTCAGCCAGATGACTG
AGGATCACATCTTTGAGGCGGAGTTCGACAAGATACGACAGAGAGGCAGT
CAAGGAAGCATCACAGCAAAATCGGCATCCACAACTTCCACGCTAACACC
AACGGAGCAGATTCCCTCTGCGGTTGTGGCTCCTGTTACAGCTGCTCCTG
GTGCAGTGCCTCCTCCGCCGATTGCTGCCGCTGTGTCTCCTTACCCGTCG
CAGGTCTCCGAGGATCCATTCGGATCGGCGCCATTCAGTTTGCCACCCGG
ACTGCGCGAGAAGGCGAGCTCGCTGCGCAAAACCGGAGCGAAATTCATCG
GCGTTTCATCTGGTGGAACAGGAGGCGGAGTGGCCACGCCTATCGGCTTG
GTAGCGGGAGGAGCAAACACCGCCACCTCTTCCAACTCATCCAAGTGGAT
GCTCTCCCCCACCCTGGAGGTTTCCAGCGAAGAGAAGACCTCGCTTATCA
GTAAACTCAAAACAGACTCAGAATGTGGAATTCCAGGCGCTGTTGGAGGA
GCTGGAGAAGGTGTCTCTGGTTATGTTAAGCTACCTGTAGAAGATCGCAA
CAAGTACGAGAAGCTGCGCAGCAAAGATCAGCCGACTTCCGATGACTCCG
ATTCCGAGGCTTCGGAGTTCTTTCAACAAGACAGCGATGAAGGAGGTGGG
GGCATCTTTAGGCAAATGCAGATGGTGACAAAGCATTTGCC

BO08852.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG10637-PA 4467 Nak-RA 1614..2479 16..881 4330 100 Plus
CG10637-PB 2853 Nak-RB 1..865 17..881 4325 100 Plus
CG10637-PC 2097 Nak-RC 1614..2086 16..488 2365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
Nak-RD 5364 CG10637-RD 1943..2818 16..891 4335 99.8 Plus
Nak-RA 5196 CG10637-RA 1943..2818 16..891 4335 99.8 Plus
Nak-RE 4280 CG10637-RE 1943..2415 16..488 2365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:14:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18960278..18960682 891..487 1980 99.3 Minus
2L 23513712 2L 18963170..18963412 258..16 1215 100 Minus
2L 23513712 2L 18962885..18963115 488..258 1155 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:14:57 has no hits.

BO08852.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:13 Download gff for BO08852.5prime
Subject Subject Range Query Range Percent Splice Strand
Nak-PA 1614..2489 16..891 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:53:00 Download gff for BO08852.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10637-PA 1614..2489 16..891 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:28:48 Download gff for BO08852.5prime
Subject Subject Range Query Range Percent Splice Strand
Nak-RA 1943..2818 16..891 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:47:00 Download gff for BO08852.5prime
Subject Subject Range Query Range Percent Splice Strand
Nak-RA 1943..2818 16..891 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:47:00 Download gff for BO08852.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 18960278..18960680 489..891 99 <- Minus
2L 18962885..18963115 258..488 100 <- Minus
2L 18963171..18963412 16..257 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:28:48 Download gff for BO08852.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18963171..18963412 16..257 100   Minus
arm_2L 18960278..18960680 489..891 99 <- Minus
arm_2L 18962885..18963115 258..488 100 <- Minus

BO08852.complete Sequence

2884 bp (2884 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631290

> BO08852.complete
GAAGTTATCAGTCGACATGGGCGACGGTCAGCAGACTTTGGCTAGTGCTG
CCTCGAATCCCGGGATATATGCATCTTCAACGGCAAACTCAGCCGCGGTA
TCCATTAGCGAATTAATGAAACCAGGACAAACGGCGGTGGAAAAGCGAGT
TGAAGCCTGGAATCCGTTCGAAGAGGAGCAGCCTTTCAGCCAGATGACTG
AGGATCACATCTTTGAGGCGGAGTTCGACAAGATACGACAGAGAGGCAGT
CAAGGAAGCATCACAGCAAAATCGGCATCCACAACTTCCACGCTAACACC
AACGGAGCAGATTCCCTCTGCGGTTGTGGCTCCTGTTACAGCTGCTCCTG
GTGCAGTGCCTCCTCCGCCGATTGCTGCCGCTGTGTCTCCTTACCCGTCG
CAGGTCTCCGAGGATCCATTCGGATCGGCGCCATTCAGTTTGCCACCCGG
ACTGCGCGAGAAGGCGAGCTCGCTGCGCAAAACCGGAGCGAAATTCATCG
GCGTTTCATCTGGTGGAACAGGAGGCGGAGTGGCCACGCCTATCGGCTTG
GTAGCGGGAGGAGCAAACACCGCCACCTCTTCCAACTCATCCAAGTGGAT
GCTCTCCCCCACCCTGGAGGTTTCCAGCGAAGAGAAGACCTCGCTTATCA
GTAAACTCAAAACAGACTCAGAATGTGGAATTCCAGGCGCTGTTGGAGGA
GCTGGAGAAGGTGTCTCTGGTTATGTTAAGCTACCTGTAGAAGATCGCAA
CAAGTACGAGAAGCTGCGCAGCAAAGATCAGCCGACTTCCGATGACTCCG
ATTCCGAGGCTTCGGAGTTCTTTCAACAAGACAGCGATGAAGGAGGTGGG
GGCATCTTTAGGCAAATGCAGATGGTGACAAGCAATTTGCCGGAAACCAT
CCATAAAATCCAACAGGTTGCCTATCACAAGGTGGACAAGACAGCTCATC
TGCCAATTGTGAAGAAACTTCGCGATAAGACCAAGAAACCCACAACAGCT
GCCCATCAAGCGGCCCAACAACTAAATCTCATGGCTGCCGCGGTAGCTGC
ACAAGCTGAAGAAGCTGCCAAGGCGGCGGAATCCGACGGTGATTCGATCG
GATCTGCCAGTGACCTGCGGGCAGAGGATGATGATCTGTTTGACGAGAAT
CCTCGCCAGACACAAGCCAAGCAACGTCGTCCTCTGCCAACAGAAATGGA
TGGAATAAGCGAGTCAGTGAAGACCTGTAGCAGCTCTGCCTACCATGCAG
AATGTGAAAGTGTGACCACCCATGAAGACGATGTGCGTAGTCGGGTGGTG
GTGAAGGTGCGGATGAGGAAGAAGGACCGTGCCCTTGTGACTGCCACTGG
CGACCCAAGTGCTCCGTCTGAAGAACTAAGTCCCACTTCGAGCGATCTCT
TGCACAAGTTCGGCGATCGTCCGTTGCTGCTAGATGATGAATTGGATTAT
GGTTCTGGAGAAAGCAAGAGTAGCACTGAATCTCCTGTGGCTCCAATTCT
GCCAACAAATCCCGATGTGCAGGAATCAGAGGAGGATGTGTTCGCCCTGG
CTCCATTTAAATTACCAGTCGGAGTTCCTTTGAAACGAAAGACTAAACCC
AAAGCTAAGCCCAAGCCTTCGGAACCCGAGATGTGGACTTCAACGCCAGT
TAAAAGCGCCGCTGTCGGAGATCCTTCTACCAACTTTGCCAGTTTTCCAG
CGCAGCTCACGCCAACCAATAATGTGGGGAACTCTGCGCAGCTGGATGAG
TTCAATGAGCCAATTTTCAATCCCTTCCAGGAAAACGCACAGAACACGCA
ATCAGGGGAAACTAATCAATGCGACCTGTTCGGCTTGGAACCATTTCCAC
AGGTAATTCGTACAATCGAACAGAACCCACAGCACCACCAGATCCACCAA
TTTCCCAGCCACAACAACAATAACAATGTGATCAAAGTGCCCGCCTCCGT
ATCTGTTGCTCTTCCTGCCTCCGTTCCTGTATCTGTTTCCGTCAATTCGT
CTGCCCCACAACTGGTGACCATAAATCACTCGATTATTATCAACAAAACG
CCGGAGCCACCGATGAACTATAATAATAATAATAATAACCAGACTGCTAA
GTCGAGTGGCACCAGCAGTGTCTATGTGAATGTGCCGTCTTTCTCCAGCA
TGAGCACCAGTTCCTGCTCCATTAACCAGCCACAATCCTCACCAGCAGCT
GTGATTCCAGTTCAGGCACCTCTTCCAGTTCCAGTTCCTGCCCCTGTTTC
CGTTCCAGCCGTTCCAGTTCCAATACCAGCGGTCGTTACCCATCTGCGTC
CTTTGCTGCCCATTGCCGATAATGCGTATGTGCAAATCTCCCAAGATCGC
TGCTCAGATTTCACACCGGACGACGAGGAGGAACCCGTGGTGTTGCGTGA
TGCCGATGTGGTGGCAGACGGAATCGGTATACCTACCCCTGCGAAACCCA
AGAAGGAGAAGTCCAATCTGGCTGTAAGGGTTCTGCCGGGAAAGCTCACC
CAAAAGGTAAAGGGGCATTCGTACAAAAAAGTAAGCGCGGCTGCCCTTGG
ATCCACCAGTTCCCTTAGTTCCGGCAGCAAGCAGAAGCACCAGCGATTGC
AGTACCAGTCCCACGATGATGACGACGACGAACAGGATCAGGATGAGAAT
CGAGGTGCTGGAGGCGGCCGCAATTTCCAATCAAACACCATTCAAAATTC
TGCCAAAACCGGCTTCAGCAACATGAGCTTTGAGGACTTTCCCTCGGATC
AGGAAATGGATCGTCTGTCCAGGACCATTCCCTTCGAGGTGGTTAGAAAC
GAAAAGATGTTACTCGAGGCGGAGAAGAAGTTCGGCTCCCTCAAGCGACG
GAACAACTTGTTCTCAGCAAGCTTTCTAGACCAT

BO08852.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:40:53
Subject Length Description Subject Range Query Range Score Percent Strand
Nak-RD 4467 CG10637-PD 1614..4464 16..2866 14255 100 Plus
Nak-RA 4467 CG10637-PA 1614..4464 16..2866 14255 100 Plus
Nak-RE 2127 CG10637-PE 1614..2086 16..488 2365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
Nak-RD 5364 CG10637-RD 1943..4793 16..2866 14255 100 Plus
Nak-RA 5196 CG10637-RA 1943..4793 16..2866 14255 100 Plus
Nak-RE 4280 CG10637-RE 1943..2415 16..488 2365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:40:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18958303..18960682 2866..487 11900 100 Minus
2L 23513712 2L 18963170..18963412 258..16 1215 100 Minus
2L 23513712 2L 18962885..18963115 488..258 1155 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:40:52 has no hits.

BO08852.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:59 Download gff for BO08852.complete
Subject Subject Range Query Range Percent Splice Strand
Nak-RA 1614..4467 16..2870 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:18:11 Download gff for BO08852.complete
Subject Subject Range Query Range Percent Splice Strand
Nak-RB 85..2938 16..2870 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:17 Download gff for BO08852.complete
Subject Subject Range Query Range Percent Splice Strand
Nak-RA 1944..4793 17..2868 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:01 Download gff for BO08852.complete
Subject Subject Range Query Range Percent Splice Strand
Nak-RB 85..2938 16..2870 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:13 Download gff for BO08852.complete
Subject Subject Range Query Range Percent Splice Strand
Nak-RA 1944..4793 17..2868 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:13 Download gff for BO08852.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18958301..18960680 489..2868 99 <- Minus
2L 18962885..18963115 258..488 100 <- Minus
2L 18963171..18963411 17..257 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:17 Download gff for BO08852.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18958301..18960680 489..2868 99 <- Minus
arm_2L 18962885..18963115 258..488 100 <- Minus
arm_2L 18963171..18963411 17..257 100   Minus

BO08852.pep Sequence

Translation from 16 to 2884

> BO08852.pep
MGDGQQTLASAASNPGIYASSTANSAAVSISELMKPGQTAVEKRVEAWNP
FEEEQPFSQMTEDHIFEAEFDKIRQRGSQGSITAKSASTTSTLTPTEQIP
SAVVAPVTAAPGAVPPPPIAAAVSPYPSQVSEDPFGSAPFSLPPGLREKA
SSLRKTGAKFIGVSSGGTGGGVATPIGLVAGGANTATSSNSSKWMLSPTL
EVSSEEKTSLISKLKTDSECGIPGAVGGAGEGVSGYVKLPVEDRNKYEKL
RSKDQPTSDDSDSEASEFFQQDSDEGGGGIFRQMQMVTSNLPETIHKIQQ
VAYHKVDKTAHLPIVKKLRDKTKKPTTAAHQAAQQLNLMAAAVAAQAEEA
AKAAESDGDSIGSASDLRAEDDDLFDENPRQTQAKQRRPLPTEMDGISES
VKTCSSSAYHAECESVTTHEDDVRSRVVVKVRMRKKDRALVTATGDPSAP
SEELSPTSSDLLHKFGDRPLLLDDELDYGSGESKSSTESPVAPILPTNPD
VQESEEDVFALAPFKLPVGVPLKRKTKPKAKPKPSEPEMWTSTPVKSAAV
GDPSTNFASFPAQLTPTNNVGNSAQLDEFNEPIFNPFQENAQNTQSGETN
QCDLFGLEPFPQVIRTIEQNPQHHQIHQFPSHNNNNNVIKVPASVSVALP
ASVPVSVSVNSSAPQLVTINHSIIINKTPEPPMNYNNNNNNQTAKSSGTS
SVYVNVPSFSSMSTSSCSINQPQSSPAAVIPVQAPLPVPVPAPVSVPAVP
VPIPAVVTHLRPLLPIADNAYVQISQDRCSDFTPDDEEEPVVLRDADVVA
DGIGIPTPAKPKKEKSNLAVRVLPGKLTQKVKGHSYKKVSAAALGSTSSL
SSGSKQKHQRLQYQSHDDDDDEQDQDENRGAGGGRNFQSNTIQNSAKTGF
SNMSFEDFPSDQEMDRLSRTIPFEVVRNEKMLLEAEKKFGSLKRRNNLFS
ASFLDH

BO08852.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:59:20
Subject Length Description Subject Range Query Range Score Percent Strand
Nak-PD 1488 CG10637-PD 539..1488 1..950 4859 100 Plus
Nak-PA 1488 CG10637-PA 539..1488 1..950 4859 100 Plus
Nak-PC 698 CG10637-PC 539..697 1..159 797 99.4 Plus
Nak-PE 708 CG10637-PE 539..695 1..157 792 100 Plus