Clone Sequence Records
BO08852.3prime Sequence
922 bp (875 high quality bases) assembled on 2006-01-10
> BO08852.3prime
ATGGTCTAGAAAGCTTGCTGAGAACAAGTTGTTCCGTCGCTTGAGGGAGC
CGAACTTCTTCTCCGCCTCGAGTAACATCTTTTCGTTTCTAACCACCTCG
AAGGGAATGGTCCTGGACAGACGATCCATTTCCTGATCCGAGGGAAAGTC
CTCAAAGCTCATGTTGCTGAAGCCGGTTTTGGCAGAATTTTGAATGGTGT
TTGATTGGAAATTGCGGCCGCCTCCAGCACCTCGATTCTCATCCTGATCC
TGTTCGTCGTCGTCATCATCGTGGGACTGGTACTGCAATCGCTGGTGCTT
CTGCTTGCTGCCGGAACTAAGGGAACTGGTGGATCCAAGGGCAGCCGCGC
TTACTTTTTTGTACGAATGCCCCTTTACCTTTTGGGTGAGCTTTCCCGGC
AGAACCCTTACAGCCAGATTGGACTTCTCCTTCTTGGGTTTCGCAGGGGT
AGGTATACCGATTCCGTCTGCCACCACATCGGCATCACGCAACACCACGG
GTTCCTCCTCGTCGTCCGGTGTGAAATCTGAGCAGCGATCTTGGGAGATT
TGCACATACGCATTATCGGCAATGGGCAGCAAAGGACGCAGATGGGTAAC
GACCGCTGGTATTGGAACTGGAACGGCTGGAACGGAAACAGGGGCAGGAA
CTGGAACTGGAAGAGGTGCCTGAACTGGAATCACAGCTGCTGGTGAGGAT
TGTGGCTGGTTAATGGAGCAGGAACTGGTGCTCATGCTGGAGAAAGACGG
CACATTCACATAGACACTGCTGGTGCCACTCGACTTAGCAGTCTGGTTAT
TATTATTATTATTATAGTTCATCGGTGGCTCCGGCGTTTTGTTGATAATA
ATCGAGTGATTTATGGTCACCAGTTGTGGGGCAGACGAATTGACGGAAAC
AGATACAGGAACGGAGGCAGGA
BO08852.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10637-PA | 4467 | Nak-RA | 3561..4464 | 922..19 | 4520 | 100 | Minus |
CG10637-PB | 2853 | Nak-RB | 1947..2850 | 922..19 | 4520 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:33:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nak-RD | 5364 | CG10637-RD | 3890..4793 | 922..19 | 4520 | 100 | Minus |
Nak-RA | 5196 | CG10637-RA | 3890..4793 | 922..19 | 4520 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:33:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18958303..18959206 | 19..922 | 4520 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:33:55 has no hits.
BO08852.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:12 Download gff for
BO08852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nak-PA | 3562..4467 | 15..921 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:52:59 Download gff for
BO08852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10637-PB | 1948..2853 | 15..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:53:42 Download gff for
BO08852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nak-RA | 3891..4796 | 15..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:52:51 Download gff for
BO08852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nak-RA | 3891..4796 | 15..921 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:52:51 Download gff for
BO08852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18958300..18959205 | 15..921 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:53:42 Download gff for
BO08852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18958300..18959205 | 15..921 | 99 | | Plus |
BO08852.5prime Sequence
891 bp (769 high quality bases) assembled on 2006-01-09
> BO08852.5prime
GAAGTTATCAGTCGACATGGGCGACGGTCAGCAGACTTTGGCTAGTGCTG
CCTCGAATCCCGGGATATATGCATCTTCAACGGCAAACTCAGCCGCGGTA
TCCATTAGCGAATTAATGAAACCAGGACAAACGGCGGTGGAAAAGCGAGT
TGAAGCCTGGAATCCGTTCGAAGAGGAGCAGCCTTTCAGCCAGATGACTG
AGGATCACATCTTTGAGGCGGAGTTCGACAAGATACGACAGAGAGGCAGT
CAAGGAAGCATCACAGCAAAATCGGCATCCACAACTTCCACGCTAACACC
AACGGAGCAGATTCCCTCTGCGGTTGTGGCTCCTGTTACAGCTGCTCCTG
GTGCAGTGCCTCCTCCGCCGATTGCTGCCGCTGTGTCTCCTTACCCGTCG
CAGGTCTCCGAGGATCCATTCGGATCGGCGCCATTCAGTTTGCCACCCGG
ACTGCGCGAGAAGGCGAGCTCGCTGCGCAAAACCGGAGCGAAATTCATCG
GCGTTTCATCTGGTGGAACAGGAGGCGGAGTGGCCACGCCTATCGGCTTG
GTAGCGGGAGGAGCAAACACCGCCACCTCTTCCAACTCATCCAAGTGGAT
GCTCTCCCCCACCCTGGAGGTTTCCAGCGAAGAGAAGACCTCGCTTATCA
GTAAACTCAAAACAGACTCAGAATGTGGAATTCCAGGCGCTGTTGGAGGA
GCTGGAGAAGGTGTCTCTGGTTATGTTAAGCTACCTGTAGAAGATCGCAA
CAAGTACGAGAAGCTGCGCAGCAAAGATCAGCCGACTTCCGATGACTCCG
ATTCCGAGGCTTCGGAGTTCTTTCAACAAGACAGCGATGAAGGAGGTGGG
GGCATCTTTAGGCAAATGCAGATGGTGACAAAGCATTTGCC
BO08852.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10637-PA | 4467 | Nak-RA | 1614..2479 | 16..881 | 4330 | 100 | Plus |
CG10637-PB | 2853 | Nak-RB | 1..865 | 17..881 | 4325 | 100 | Plus |
CG10637-PC | 2097 | Nak-RC | 1614..2086 | 16..488 | 2365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:14:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nak-RD | 5364 | CG10637-RD | 1943..2818 | 16..891 | 4335 | 99.8 | Plus |
Nak-RA | 5196 | CG10637-RA | 1943..2818 | 16..891 | 4335 | 99.8 | Plus |
Nak-RE | 4280 | CG10637-RE | 1943..2415 | 16..488 | 2365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:14:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18960278..18960682 | 891..487 | 1980 | 99.3 | Minus |
2L | 23513712 | 2L | 18963170..18963412 | 258..16 | 1215 | 100 | Minus |
2L | 23513712 | 2L | 18962885..18963115 | 488..258 | 1155 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:14:57 has no hits.
BO08852.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:13 Download gff for
BO08852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nak-PA | 1614..2489 | 16..891 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:53:00 Download gff for
BO08852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10637-PA | 1614..2489 | 16..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:28:48 Download gff for
BO08852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nak-RA | 1943..2818 | 16..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:47:00 Download gff for
BO08852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nak-RA | 1943..2818 | 16..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:47:00 Download gff for
BO08852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18960278..18960680 | 489..891 | 99 | <- | Minus |
2L | 18962885..18963115 | 258..488 | 100 | <- | Minus |
2L | 18963171..18963412 | 16..257 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:28:48 Download gff for
BO08852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18963171..18963412 | 16..257 | 100 | | Minus |
arm_2L | 18960278..18960680 | 489..891 | 99 | <- | Minus |
arm_2L | 18962885..18963115 | 258..488 | 100 | <- | Minus |
BO08852.complete Sequence
2884 bp (2884 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631290
> BO08852.complete
GAAGTTATCAGTCGACATGGGCGACGGTCAGCAGACTTTGGCTAGTGCTG
CCTCGAATCCCGGGATATATGCATCTTCAACGGCAAACTCAGCCGCGGTA
TCCATTAGCGAATTAATGAAACCAGGACAAACGGCGGTGGAAAAGCGAGT
TGAAGCCTGGAATCCGTTCGAAGAGGAGCAGCCTTTCAGCCAGATGACTG
AGGATCACATCTTTGAGGCGGAGTTCGACAAGATACGACAGAGAGGCAGT
CAAGGAAGCATCACAGCAAAATCGGCATCCACAACTTCCACGCTAACACC
AACGGAGCAGATTCCCTCTGCGGTTGTGGCTCCTGTTACAGCTGCTCCTG
GTGCAGTGCCTCCTCCGCCGATTGCTGCCGCTGTGTCTCCTTACCCGTCG
CAGGTCTCCGAGGATCCATTCGGATCGGCGCCATTCAGTTTGCCACCCGG
ACTGCGCGAGAAGGCGAGCTCGCTGCGCAAAACCGGAGCGAAATTCATCG
GCGTTTCATCTGGTGGAACAGGAGGCGGAGTGGCCACGCCTATCGGCTTG
GTAGCGGGAGGAGCAAACACCGCCACCTCTTCCAACTCATCCAAGTGGAT
GCTCTCCCCCACCCTGGAGGTTTCCAGCGAAGAGAAGACCTCGCTTATCA
GTAAACTCAAAACAGACTCAGAATGTGGAATTCCAGGCGCTGTTGGAGGA
GCTGGAGAAGGTGTCTCTGGTTATGTTAAGCTACCTGTAGAAGATCGCAA
CAAGTACGAGAAGCTGCGCAGCAAAGATCAGCCGACTTCCGATGACTCCG
ATTCCGAGGCTTCGGAGTTCTTTCAACAAGACAGCGATGAAGGAGGTGGG
GGCATCTTTAGGCAAATGCAGATGGTGACAAGCAATTTGCCGGAAACCAT
CCATAAAATCCAACAGGTTGCCTATCACAAGGTGGACAAGACAGCTCATC
TGCCAATTGTGAAGAAACTTCGCGATAAGACCAAGAAACCCACAACAGCT
GCCCATCAAGCGGCCCAACAACTAAATCTCATGGCTGCCGCGGTAGCTGC
ACAAGCTGAAGAAGCTGCCAAGGCGGCGGAATCCGACGGTGATTCGATCG
GATCTGCCAGTGACCTGCGGGCAGAGGATGATGATCTGTTTGACGAGAAT
CCTCGCCAGACACAAGCCAAGCAACGTCGTCCTCTGCCAACAGAAATGGA
TGGAATAAGCGAGTCAGTGAAGACCTGTAGCAGCTCTGCCTACCATGCAG
AATGTGAAAGTGTGACCACCCATGAAGACGATGTGCGTAGTCGGGTGGTG
GTGAAGGTGCGGATGAGGAAGAAGGACCGTGCCCTTGTGACTGCCACTGG
CGACCCAAGTGCTCCGTCTGAAGAACTAAGTCCCACTTCGAGCGATCTCT
TGCACAAGTTCGGCGATCGTCCGTTGCTGCTAGATGATGAATTGGATTAT
GGTTCTGGAGAAAGCAAGAGTAGCACTGAATCTCCTGTGGCTCCAATTCT
GCCAACAAATCCCGATGTGCAGGAATCAGAGGAGGATGTGTTCGCCCTGG
CTCCATTTAAATTACCAGTCGGAGTTCCTTTGAAACGAAAGACTAAACCC
AAAGCTAAGCCCAAGCCTTCGGAACCCGAGATGTGGACTTCAACGCCAGT
TAAAAGCGCCGCTGTCGGAGATCCTTCTACCAACTTTGCCAGTTTTCCAG
CGCAGCTCACGCCAACCAATAATGTGGGGAACTCTGCGCAGCTGGATGAG
TTCAATGAGCCAATTTTCAATCCCTTCCAGGAAAACGCACAGAACACGCA
ATCAGGGGAAACTAATCAATGCGACCTGTTCGGCTTGGAACCATTTCCAC
AGGTAATTCGTACAATCGAACAGAACCCACAGCACCACCAGATCCACCAA
TTTCCCAGCCACAACAACAATAACAATGTGATCAAAGTGCCCGCCTCCGT
ATCTGTTGCTCTTCCTGCCTCCGTTCCTGTATCTGTTTCCGTCAATTCGT
CTGCCCCACAACTGGTGACCATAAATCACTCGATTATTATCAACAAAACG
CCGGAGCCACCGATGAACTATAATAATAATAATAATAACCAGACTGCTAA
GTCGAGTGGCACCAGCAGTGTCTATGTGAATGTGCCGTCTTTCTCCAGCA
TGAGCACCAGTTCCTGCTCCATTAACCAGCCACAATCCTCACCAGCAGCT
GTGATTCCAGTTCAGGCACCTCTTCCAGTTCCAGTTCCTGCCCCTGTTTC
CGTTCCAGCCGTTCCAGTTCCAATACCAGCGGTCGTTACCCATCTGCGTC
CTTTGCTGCCCATTGCCGATAATGCGTATGTGCAAATCTCCCAAGATCGC
TGCTCAGATTTCACACCGGACGACGAGGAGGAACCCGTGGTGTTGCGTGA
TGCCGATGTGGTGGCAGACGGAATCGGTATACCTACCCCTGCGAAACCCA
AGAAGGAGAAGTCCAATCTGGCTGTAAGGGTTCTGCCGGGAAAGCTCACC
CAAAAGGTAAAGGGGCATTCGTACAAAAAAGTAAGCGCGGCTGCCCTTGG
ATCCACCAGTTCCCTTAGTTCCGGCAGCAAGCAGAAGCACCAGCGATTGC
AGTACCAGTCCCACGATGATGACGACGACGAACAGGATCAGGATGAGAAT
CGAGGTGCTGGAGGCGGCCGCAATTTCCAATCAAACACCATTCAAAATTC
TGCCAAAACCGGCTTCAGCAACATGAGCTTTGAGGACTTTCCCTCGGATC
AGGAAATGGATCGTCTGTCCAGGACCATTCCCTTCGAGGTGGTTAGAAAC
GAAAAGATGTTACTCGAGGCGGAGAAGAAGTTCGGCTCCCTCAAGCGACG
GAACAACTTGTTCTCAGCAAGCTTTCTAGACCAT
BO08852.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:40:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nak-RD | 4467 | CG10637-PD | 1614..4464 | 16..2866 | 14255 | 100 | Plus |
Nak-RA | 4467 | CG10637-PA | 1614..4464 | 16..2866 | 14255 | 100 | Plus |
Nak-RE | 2127 | CG10637-PE | 1614..2086 | 16..488 | 2365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:40:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nak-RD | 5364 | CG10637-RD | 1943..4793 | 16..2866 | 14255 | 100 | Plus |
Nak-RA | 5196 | CG10637-RA | 1943..4793 | 16..2866 | 14255 | 100 | Plus |
Nak-RE | 4280 | CG10637-RE | 1943..2415 | 16..488 | 2365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:40:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18958303..18960682 | 2866..487 | 11900 | 100 | Minus |
2L | 23513712 | 2L | 18963170..18963412 | 258..16 | 1215 | 100 | Minus |
2L | 23513712 | 2L | 18962885..18963115 | 488..258 | 1155 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:40:52 has no hits.
BO08852.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:59 Download gff for
BO08852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nak-RA | 1614..4467 | 16..2870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:18:11 Download gff for
BO08852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nak-RB | 85..2938 | 16..2870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:17 Download gff for
BO08852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nak-RA | 1944..4793 | 17..2868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:01 Download gff for
BO08852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nak-RB | 85..2938 | 16..2870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:13 Download gff for
BO08852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nak-RA | 1944..4793 | 17..2868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:13 Download gff for
BO08852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18958301..18960680 | 489..2868 | 99 | <- | Minus |
2L | 18962885..18963115 | 258..488 | 100 | <- | Minus |
2L | 18963171..18963411 | 17..257 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:17 Download gff for
BO08852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18958301..18960680 | 489..2868 | 99 | <- | Minus |
arm_2L | 18962885..18963115 | 258..488 | 100 | <- | Minus |
arm_2L | 18963171..18963411 | 17..257 | 100 | | Minus |
BO08852.pep Sequence
Translation from 16 to 2884
> BO08852.pep
MGDGQQTLASAASNPGIYASSTANSAAVSISELMKPGQTAVEKRVEAWNP
FEEEQPFSQMTEDHIFEAEFDKIRQRGSQGSITAKSASTTSTLTPTEQIP
SAVVAPVTAAPGAVPPPPIAAAVSPYPSQVSEDPFGSAPFSLPPGLREKA
SSLRKTGAKFIGVSSGGTGGGVATPIGLVAGGANTATSSNSSKWMLSPTL
EVSSEEKTSLISKLKTDSECGIPGAVGGAGEGVSGYVKLPVEDRNKYEKL
RSKDQPTSDDSDSEASEFFQQDSDEGGGGIFRQMQMVTSNLPETIHKIQQ
VAYHKVDKTAHLPIVKKLRDKTKKPTTAAHQAAQQLNLMAAAVAAQAEEA
AKAAESDGDSIGSASDLRAEDDDLFDENPRQTQAKQRRPLPTEMDGISES
VKTCSSSAYHAECESVTTHEDDVRSRVVVKVRMRKKDRALVTATGDPSAP
SEELSPTSSDLLHKFGDRPLLLDDELDYGSGESKSSTESPVAPILPTNPD
VQESEEDVFALAPFKLPVGVPLKRKTKPKAKPKPSEPEMWTSTPVKSAAV
GDPSTNFASFPAQLTPTNNVGNSAQLDEFNEPIFNPFQENAQNTQSGETN
QCDLFGLEPFPQVIRTIEQNPQHHQIHQFPSHNNNNNVIKVPASVSVALP
ASVPVSVSVNSSAPQLVTINHSIIINKTPEPPMNYNNNNNNQTAKSSGTS
SVYVNVPSFSSMSTSSCSINQPQSSPAAVIPVQAPLPVPVPAPVSVPAVP
VPIPAVVTHLRPLLPIADNAYVQISQDRCSDFTPDDEEEPVVLRDADVVA
DGIGIPTPAKPKKEKSNLAVRVLPGKLTQKVKGHSYKKVSAAALGSTSSL
SSGSKQKHQRLQYQSHDDDDDEQDQDENRGAGGGRNFQSNTIQNSAKTGF
SNMSFEDFPSDQEMDRLSRTIPFEVVRNEKMLLEAEKKFGSLKRRNNLFS
ASFLDH
BO08852.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:59:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nak-PD | 1488 | CG10637-PD | 539..1488 | 1..950 | 4859 | 100 | Plus |
Nak-PA | 1488 | CG10637-PA | 539..1488 | 1..950 | 4859 | 100 | Plus |
Nak-PC | 698 | CG10637-PC | 539..697 | 1..159 | 797 | 99.4 | Plus |
Nak-PE | 708 | CG10637-PE | 539..695 | 1..157 | 792 | 100 | Plus |