Clone Sequence Records
BO08853.3prime Sequence
928 bp (821 high quality bases) assembled on 2006-01-10
> BO08853.3prime
ATGGTCTAGAAAGCTTGCGCTAATCGAGACCAGCGGCTTGTTGATGAGAC
TCTTTTTGAGCTTAGCCAGAGCGCTATTTGCGGCCTTGTCTCCTGGCTTC
TTGTCCTTGTTTTTGGGACCCAATGGTATCATGGTTGTGTCCATTAGCTT
GCGTCTGAATCCCTTGTAGAACTGCAGCACGTGTGGATTGGCCCACACTT
GCTTGGCGTCAAAGTCCAGGATGCGAATGGACTGCAGGGATTTCGCACGG
GATAAGGCCACATAGGCCTGTCCAGCCTCAAATACTTTGGAAAGGGACAT
CTCCACGCAGTCGAGGGTTAGTCCCTGACTCTTGTGTATGGAAAATGCCC
AGGCTAACTTCAGTGGCACTTGGCGTCGTGTTATATGGTTTCCTGAGGCG
GTCTTTATTATCCACCTTTCGTGCTTGCAAACGTATTCCTGGTTGTTTTT
GAACCTTACCACTGGCAGATCCTTCTCCATTCTTACAACGACGCCTCGAG
CTCCGTTCACCAGTCCATTGGATATGTTTATATTCTTGAGTAGCATTACT
TGGGCGTTAACTTTTAGGTACAACTGAGATGGAGCCTGGATCTGTTGATC
CAGTGTCCTGGTCATGCTGGCATCGGAGTCGTCAGCCTTGAATAAAATCT
TGTCGCCATCGAGGTTTTCCAGCTTGGACTCGTTAATGGAGTTCGCATCG
TTTGTGTGGGAGCAGAGTTGAGTGGCCAGAATGCCGTTTCCCTCAATTTT
CTGCTTTGATGTAGCTGCAAGTCGACTGGTTATGGAATCGTTCACATGGC
CAATTCGGAGGTGGTTCAGAATCTTTTACAACTCCGGATCCGATTGCCGA
TGCACTTGCTTCAGTTCGTAGACACACTGGATGCAAGTCTCCCATGCGGA
GGACTGAAAGCAGAATCGTTGCTGGGGC
BO08853.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3238-PA | 1992 | CG3238-RA | 1182..1989 | 826..19 | 4040 | 100 | Minus |
| CG3238-PA | 1992 | CG3238-RA | 1080..1178 | 928..830 | 495 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:14:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3238-RB | 2611 | CG3238-RB | 1190..2099 | 928..19 | 4505 | 99.8 | Minus |
| CG3238-RA | 2529 | CG3238-RA | 1190..2099 | 928..19 | 4505 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:14:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3467854..3468763 | 19..928 | 4505 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:14:10 has no hits.
BO08853.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:14 Download gff for
BO08853.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3238-PA | 1080..1992 | 16..928 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:53:01 Download gff for
BO08853.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3238-PA | 1080..1992 | 16..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:01:04 Download gff for
BO08853.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3238-RA | 1190..2105 | 12..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:33:29 Download gff for
BO08853.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3238-RA | 1190..2105 | 12..928 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:33:29 Download gff for
BO08853.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3467848..3468763 | 12..928 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:01:04 Download gff for
BO08853.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3467848..3468763 | 12..928 | 99 | | Plus |
BO08853.5prime Sequence
900 bp (802 high quality bases) assembled on 2006-01-09
> BO08853.5prime
GAAGTTATCAGTCGACATGGATCTCAATGACGCAGTGCTCACCTGTGCGG
TGAACATGGAGTGGACCAATGCGGTGGGCATCACGGGTCGCAAACTGGCC
TACAAGACTGCCACATTGCGCCTGGTGCGGAACGATTTGCGTGAATTGTT
TGTTGAGGTGACGCCGGAGAAACTAAAGCCCCTGAAGTTCAAGCTGAAGG
ATCTGATGGTGCACAAGAAGTTCATGTCCGAGGGCAAGGCCACCTTCAAC
TTCAAGGCGGAGAAGTGCACCCTCTATCTATCGAATGCACCGCCGGGGAC
TTTGATGTTCTTCCTGCGGACGATCTTCGTTAAAATGAACGGAAACGAGG
GAGGATCCCAGCCGGACGATGCGACCTTGCAGAAGAAACTCCGCGAGCAC
CTGATGTCAGGCAAGCCAAGCAGCTTTAACGACGTTTCTCCAGTCACCAC
GGCCGAGATGATTTTGGCGCGCAAAAAGGCGGGTTTGTTGTCCAAGGGGT
CAGTGACCACGCCGTCGCCCCAGGGCGCCAAAAAGCGTCGCTTCGAGGAG
CTCAAGGAGGAGAAGGAACGGGGCACCATGCCCGCGGCCAAGAAACTATA
TGCGTCGACTACCGACGAGTCGCTGAGACTCAGTGAGGAGCAAATGGAAG
TCCTGCGGGCGTGCACCTCGGGCAAGAGCGTATTCTTCACCGGTTCAGCA
GGCACTGGCAAGAGTTTCTTGCTCCGCAGGATCATCTCAGCCCTGCCGCC
CGATGGAACGGTGGCCACGGCCTCCACGGGAGTGGCAGCCTGCCTGATCG
GTGGGACCACCTTGCACGCCTTCGCTGGCATAGGAGGAGGAGACGCCACC
ATGCAGCGGTGTCTGGAGCTGGCTTCCCGACCCGCAAATGCCCAGACGTG
BO08853.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3238-PA | 1992 | CG3238-RA | 1..884 | 17..900 | 4420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:55:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3238-RB | 2611 | CG3238-RB | 106..994 | 12..900 | 4430 | 99.9 | Plus |
| CG3238-RA | 2529 | CG3238-RA | 106..994 | 12..900 | 4430 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:55:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3469011..3469899 | 900..12 | 4430 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:55:51 has no hits.
BO08853.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:14 Download gff for
BO08853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3238-PA | 1..884 | 17..900 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:53:03 Download gff for
BO08853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3238-PA | 1..884 | 17..900 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:51:33 Download gff for
BO08853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3238-RA | 103..994 | 7..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:03:36 Download gff for
BO08853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3238-RA | 103..994 | 7..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:03:36 Download gff for
BO08853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3469011..3469900 | 11..900 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:51:33 Download gff for
BO08853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3469011..3469900 | 11..900 | 99 | <- | Minus |
BO08853.complete Sequence
2023 bp (2023 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631291
> BO08853.complete
GAAGTTATCAGTCGACATGGATCTCAATGACGCAGTGCTCACCTGTGCGG
TGAACATGGAGTGGACCAATGCGGTGGGCATCACGGGTCGCAAACTGGCC
TACAAGACTGCCACATTGCGCCTGGTGCGGAACGATTTGCGTGAATTGTT
TGTTGAGGTGACGCCGGAGAAACTAAAGCCCCTGAAGTTCAAGCTGAAGG
ATCTGATGGTGCACAAGAAGTTCATGTCCGAGGGCAAGGCCACCTTCAAC
TTCAAGGCGGAGAAGTGCACCCTCTATCTATCGAATGCACCGCCGGGGAC
TTTGATGTTCTTCCTGCGGACGATCTTCGTTAAAATGAACGGAAACGAGG
GAGGATCCCAGCCGGACGATGCGACCTTGCAGAAGAAACTCCGCGAGCAC
CTGATGTCAGGCAAGCCAAGCAGCTTTAACGACGTTTCTCCAGTCACCAC
GGCCGAGATGATTTTGGCGCGCAAAAAGGCGGGTTTGTTGTCCAAGGGGT
CAGTGACCACGCCGTCGCCCCAGGGCGCCAAAAAGCGTCGCTTCGAGGAG
CTCAAGGAGGAGAAGGAACGGGGCACCATGCCCGCGGCCAAGAAACTATA
TGCGTCGACTACCGACGAGTCGCTGAGACTCAGTGAGGAGCAAATGGAAG
TCCTGCGGGCGTGCACCTCGGGCAAGAGCGTATTCTTCACCGGTTCAGCA
GGCACTGGCAAGAGTTTCTTGCTCCGCAGGATCATCTCAGCCCTGCCGCC
CGATGGAACGGTGGCCACGGCCTCCACGGGAGTGGCAGCCTGCCTGATCG
GTGGGACCACCTTGCACGCCTTCGCTGGCATAGGAGGAGGAGACGCCACC
ATGCAGCGGTGTCTGGAGCTGGCTTCCCGACCCGCAAATGCCCAGACGTG
GAGGAAGTGCAAGCGGTTGATTATTGACGAGATCTCCATGGTGGACGGAC
AGTTCTTTGAGAAAATTGAAGCCGTCGCACGTCACATTCGGCGCAATGAT
CGCCCCTTTGGCGGCATACAGCTCATCCTGTGTGGTGACTTCTTGCAACT
GCCTCCGGTCATAAAGGGAGATTTTGGTGCAGCCCCCACTGCCACGCCCC
AGCAACGATTCTGCTTTCAGTCCTCCGCATGGGAGACTTGCATCCAGTGT
GTCTACGAACTGAAGCAAGTGCATCGGCAATCGGATCCGGAGTTTGTAAA
GATTCTGAACCACCTCCGAATTGGCCATGTGAACGATTCCATAACCAGTC
GACTTGCAGCTACATCAAAGCAGAAAATTGAGGGAAACGGCATTCTGGCC
ACTCAACTCTGCTCCCACACAAACGATGCGAACTCCATTAACGAGTCCAA
GCTGGAAAACCTCGATGGCGACAAGATTTTATTCAAGGCTGACGACTCCG
ATGCCAGCATGACCAGGACACTGGATCAACAGATCCAGGCTCCATCTCAG
TTGTACCTAAAAGTTAACGCCCAAGTAATGCTACTCAAGAATATAAACAT
ATCCAATGGACTGGTGAACGGAGCTCGAGGCGTCGTTGTAAGAATGGAGA
AGGATCTGCCAGTGGTAAGGTTCAAAAACAACCAGGAATACGTTTGCAAG
CACGAAAGGTGGATAATAAAGACCGCCTCAGGAAACCATATAACACGACG
CCAAGTGCCACTGAAGTTAGCCTGGGCATTTTCCATACACAAGAGTCAGG
GACTAACCCTCGACTGCGTGGAGATGTCCCTTTCCAAAGTATTTGAGGCT
GGACAGGCCTATGTGGCCTTATCCCGTGCGAAATCCCTGCAGTCCATTCG
CATCCTGGACTTTGACGCCAAGCAAGTGTGGGCCAATCCACACGTGCTGC
AGTTCTACAAGGGATTCAGACGCAAGCTAATGGACACAACCATGATACCA
TTGGGTCCCAAAAACAAGGACAAGAAGCCAGGAGACAAGGCCGCAAATAG
CGCTCTGGCTAAGCTCAAAAAGAGTCTCATCAACAAGCCGCTGGTCTCGA
TTAGCGCAAGCTTTCTAGACCAT
BO08853.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:31:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3238-RB | 1992 | CG3238-PB | 1..1989 | 17..2005 | 9945 | 100 | Plus |
| CG3238-RA | 1992 | CG3238-PA | 1..1989 | 17..2005 | 9945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:31:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3238-RB | 2611 | CG3238-RB | 106..2099 | 12..2005 | 9955 | 99.9 | Plus |
| CG3238-RA | 2529 | CG3238-RA | 106..2099 | 12..2005 | 9955 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:31:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3467854..3468899 | 2005..960 | 5230 | 100 | Minus |
| 2L | 23513712 | 2L | 3468950..3469899 | 961..12 | 4735 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:31:03 has no hits.
BO08853.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:40 Download gff for
BO08853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3238-RA | 1..1992 | 17..2008 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:54:16 Download gff for
BO08853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3238-RA | 114..2102 | 17..2007 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:30 Download gff for
BO08853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3238-RA | 111..2099 | 17..2007 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:40 Download gff for
BO08853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3238-RA | 106..2108 | 7..2012 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:19:41 Download gff for
BO08853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3238-RA | 111..2099 | 17..2007 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:19:41 Download gff for
BO08853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3467851..3468897 | 962..2007 | 99 | <- | Minus |
| 2L | 3468950..3469894 | 17..961 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:30 Download gff for
BO08853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3467851..3468897 | 962..2007 | 99 | <- | Minus |
| arm_2L | 3468950..3469894 | 17..961 | 100 | | Minus |
BO08853.pep Sequence
Translation from 16 to 2023
> BO08853.pep
MDLNDAVLTCAVNMEWTNAVGITGRKLAYKTATLRLVRNDLRELFVEVTP
EKLKPLKFKLKDLMVHKKFMSEGKATFNFKAEKCTLYLSNAPPGTLMFFL
RTIFVKMNGNEGGSQPDDATLQKKLREHLMSGKPSSFNDVSPVTTAEMIL
ARKKAGLLSKGSVTTPSPQGAKKRRFEELKEEKERGTMPAAKKLYASTTD
ESLRLSEEQMEVLRACTSGKSVFFTGSAGTGKSFLLRRIISALPPDGTVA
TASTGVAACLIGGTTLHAFAGIGGGDATMQRCLELASRPANAQTWRKCKR
LIIDEISMVDGQFFEKIEAVARHIRRNDRPFGGIQLILCGDFLQLPPVIK
GDFGAAPTATPQQRFCFQSSAWETCIQCVYELKQVHRQSDPEFVKILNHL
RIGHVNDSITSRLAATSKQKIEGNGILATQLCSHTNDANSINESKLENLD
GDKILFKADDSDASMTRTLDQQIQAPSQLYLKVNAQVMLLKNINISNGLV
NGARGVVVRMEKDLPVVRFKNNQEYVCKHERWIIKTASGNHITRRQVPLK
LAWAFSIHKSQGLTLDCVEMSLSKVFEAGQAYVALSRAKSLQSIRILDFD
AKQVWANPHVLQFYKGFRRKLMDTTMIPLGPKNKDKKPGDKAANSALAKL
KKSLINKPLVSISASFLDH
BO08853.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:59:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3238-PB | 663 | CG3238-PB | 1..663 | 1..663 | 3397 | 100 | Plus |
| CG3238-PA | 663 | CG3238-PA | 1..663 | 1..663 | 3397 | 100 | Plus |
