Clone Sequence Records
BO08857.3prime Sequence
947 bp (806 high quality bases) assembled on 2006-01-09
> BO08857.3prime
ATGGTCTAGAAAGCTTGCTGTCTCCGTCTCCTTGCCACCGCCGAAGGTCT
CCACGGGCGGATAAATCGGATGGCTGATGCGGTTCATTTCAAGGGTCGAT
GGTGCGGATGGTGTTCGGGATGCTCCTAGCAGACCGCAGAGCTGCTGCAG
CATGTCACTGTACGATCTTGTGCTGAGGTTCTGGCTCAGGAAGTGCAAGA
TCAGGAAGTCACCAATCTCCAAACGCCTAACCAGTCCGGCGATTTCCTTC
CGTTGTGCCGAGCGATAAGAACGCTTGATGATGGTCTCCCGAGTGGTGGG
CATCATGATAACCACCAGTGAATAGAGCACAGCCACGCCGGAGATGGTGG
CCAAGATGATAAACCAGAACCACAGGAAGATGTAGATCTTCTCGTTGAGG
ATATTCAGTGCCAGCACACAGAGAGTGTCGTGTTTCTGGACCGATCCACT
GGGACCGAACTTGTGGAACGTGCACTTGGTGAGCCGGGGAAAGATCTCGA
TCATCGGATCGAAGCGCTTGTCCTGATCCATGTTGGAGAACTTGAGCACA
TCCGTACCGTAGGACATGAAAGCACCGCCCAGAAACTTATCCACCATAAA
GATATTCACAATCACGTTGATAAAGTTAAGCAGTTCGCAGAAAAAGTATG
CGAACGAGTAGCCGTTGTGGGTGTTCAAACTGTTCACGAAATACTTGAGG
ATCCGGTCCTGGCGATCACGCCGATAGTCATCCGGCACACTGACCATGCC
GCGCAGTCCATCGGTGATCATGCGGATCTTGCCGTCTTCCATGTTCTTCC
AAACCCAGTGGGGCACGTAGAACATGAGCCCCTGGAAGAATAGCACGAAT
GGCACCCATTGATAGTAGCTGTGATAGCGCTTCTCCTGGCCGTACTCATT
GCCCAATCCCGGGACAACCACGTCCGTTCCGATTTGCCGATGCTGCT
BO08857.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1448-PA | 1188 | inx3-RA | 257..1185 | 947..19 | 4570 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:58:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Inx3-RC | 1652 | CG1448-RC | 397..1325 | 947..19 | 4600 | 99.7 | Minus |
Inx3-RB | 2136 | CG1448-RB | 350..1278 | 947..19 | 4600 | 99.7 | Minus |
Inx3-RA | 1605 | CG1448-RA | 350..1278 | 947..19 | 4600 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:57:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28854944..28855416 | 369..841 | 2335 | 99.6 | Plus |
3R | 32079331 | 3R | 28854464..28854663 | 19..218 | 1000 | 100 | Plus |
3R | 32079331 | 3R | 28854723..28854884 | 210..371 | 780 | 98.8 | Plus |
3R | 32079331 | 3R | 28855732..28855848 | 831..947 | 540 | 97.4 | Plus |
X | 23542271 | X | 6999832..6999959 | 482..355 | 235 | 78.9 | Minus |
X | 23542271 | X | 6974773..6974900 | 362..489 | 220 | 78.1 | Plus |
X | 23542271 | X | 6992243..6992360 | 363..480 | 185 | 77.1 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:58:02 has no hits.
BO08857.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:21 Download gff for
BO08857.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inx3-PA | 257..1188 | 16..947 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:53:12 Download gff for
BO08857.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1448-PA | 257..1188 | 16..947 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:39:07 Download gff for
BO08857.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Inx3-RA | 350..1283 | 13..947 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:19 Download gff for
BO08857.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Inx3-RA | 350..1283 | 13..947 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:19 Download gff for
BO08857.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28854459..28854661 | 13..216 | 98 | <- | Plus |
3R | 28854730..28854883 | 217..370 | 100 | <- | Plus |
3R | 28854946..28855406 | 371..831 | 100 | <- | Plus |
3R | 28855733..28855848 | 832..947 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:39:07 Download gff for
BO08857.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24680181..24680383 | 13..216 | 98 | <- | Plus |
arm_3R | 24680452..24680605 | 217..370 | 100 | <- | Plus |
arm_3R | 24680668..24681128 | 371..831 | 100 | <- | Plus |
arm_3R | 24681455..24681570 | 832..947 | 97 | | Plus |
BO08857.5prime Sequence
865 bp (826 high quality bases) assembled on 2006-01-09
> BO08857.5prime
GAAGTTATCAGTCGACATGGCGGTCTTTGGCATGGTCTCGGCTGTGTCCG
GCTTTATCAAGATACGCTATCTGCTGGACAAGGCGGTCATCGACAACATG
GTTTTCCGCTGCCACTACAGGATCACGACGGCCATTCTGTTCACTTGTTG
CATCATCGTCACCGCAAACAATCTGATCGGCGATCCCATAAGTTGCATCA
ACGACGGCGCCATTCCGATGCACGTAATCAACACCTTCTGCTGGATCACC
TACACGTACACGATACCTGGCCAGCAGCATCGGCAAATCGGAACGGACGT
GGCTGGTCCGGGATTGGGCAATGAGTACGGCCAGGAGAAGCGCTATCACA
GCTACTATCAATGGGTGCCATTCGTGCTATTCTTCCAGGGGCTCATGTTC
TACGTGCCCCACTGGGTTTGGAAGAACATGGAAGACGGCAAGATCCGCAT
GATCACCGATGGACTGCGCGGCATGGTCAGTGTGCCGGATGACTATCGGC
GTGATCGCCAGGACCGGATCCTCAAGTATTTCGTGAACAGTTTGAACACC
CACAACGGCTACTCGTTCGCATACTTTTTCTGCGAACTGCTTAACTTTAT
CAACGTGATTGTGAATATCTTTATGGTGGATAAGTTTCTGGGCGGTGCTT
TCATGTCCTACGGTACGGATGTGCTCAAGTTCTCCAACATGGATCAGGAC
AAGCGCTTCGATCCGATGATCGAGATCTTTCCCCGGCTCACCAAGTGCAC
GTTCCACAAGTTCGGTCCCAGTGGATCGGTCCAGAAACACGACACTCTCT
GTGTGCTGGCACTGAATATCCTCAACGAGAAGATCTACATCTTCCTGTGG
GTCTGGTTTATCATC
BO08857.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1448-PA | 1188 | inx3-RA | 1..849 | 17..865 | 4220 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:33:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Inx3-RC | 1652 | CG1448-RC | 139..989 | 15..865 | 4240 | 99.9 | Plus |
Inx3-RB | 2136 | CG1448-RB | 92..942 | 15..865 | 4240 | 99.9 | Plus |
Inx3-RA | 1605 | CG1448-RA | 92..942 | 15..865 | 4240 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:33:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28854945..28855416 | 850..379 | 2330 | 99.6 | Minus |
3R | 32079331 | 3R | 28855732..28855942 | 389..179 | 1055 | 100 | Minus |
3R | 32079331 | 3R | 28857142..28857307 | 180..15 | 830 | 100 | Minus |
X | 23542271 | X | 6974773..6974900 | 858..731 | 205 | 77.3 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:33:10 has no hits.
BO08857.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:22 Download gff for
BO08857.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inx3-PA | 1..849 | 17..865 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:53:14 Download gff for
BO08857.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1448-PA | 1..849 | 17..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:41:14 Download gff for
BO08857.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Inx3-RA | 87..942 | 9..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:21 Download gff for
BO08857.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Inx3-RA | 87..942 | 9..865 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:21 Download gff for
BO08857.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28854946..28855406 | 389..849 | 100 | <- | Minus |
3R | 28855733..28855941 | 180..388 | 100 | <- | Minus |
3R | 28857143..28857312 | 9..179 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:41:14 Download gff for
BO08857.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24680668..24681128 | 389..849 | 100 | <- | Minus |
arm_3R | 24681455..24681663 | 180..388 | 100 | <- | Minus |
arm_3R | 24682865..24683034 | 9..179 | 98 | | Minus |
BO08857.complete Sequence
1219 bp (1219 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631292
> BO08857.complete
GAAGTTATCAGTCGACATGGCGGTCTTTGGCATGGTCTCGGCTGTGTCCG
GCTTTATCAAGATACGCTATCTGCTGGACAAGGCGGTCATCGACAACATG
GTTTTCCGCTGCCACTACAGGATCACGACGGCCATTCTGTTCACTTGTTG
CATCATCGTCACCGCAAACAATCTGATCGGCGATCCCATAAGTTGCATCA
ACGACGGCGCCATTCCGATGCACGTAATCAACACCTTCTGCTGGATCACC
TACACGTACACGATACCTGGCCAGCAGCATCGGCAAATCGGAACGGACGT
GGCTGGTCCGGGATTGGGCAATGAGTACGGCCAGGAGAAGCGCTATCACA
GCTACTATCAATGGGTGCCATTCGTGCTATTCTTCCAGGGGCTCATGTTC
TACGTGCCCCACTGGGTTTGGAAGAACATGGAAGACGGCAAGATCCGCAT
GATCACCGATGGACTGCGCGGCATGGTCAGTGTGCCGGATGACTATCGGC
GTGATCGCCAGGACCGGATCCTCAAGTATTTCGTGAACAGTTTGAACACC
CACAACGGCTACTCGTTCGCATACTTTTTCTGCGAACTGCTTAACTTTAT
CAACGTGATTGTGAATATCTTTATGGTGGATAAGTTTCTGGGCGGTGCTT
TCATGTCCTACGGTACGGATGTGCTCAAGTTCTCCAACATGGATCAGGAC
AAGCGCTTCGATCCGATGATCGAGATCTTTCCCCGGCTCACCAAGTGCAC
GTTCCACAAGTTCGGTCCCAGTGGATCGGTCCAGAAACACGACACTCTCT
GTGTGCTGGCACTGAATATCCTCAACGAGAAGATCTACATCTTCCTGTGG
TTCTGGTTTATCATCTTGGCCACCATCTCCGGCGTGGCTGTGCTCTATTC
ACTGGTGGTTATCATGATGCCCACCACTCGGGAGACCATCATCAAGCGTT
CTTATCGCTCGGCACAACGGAAGGAAATCGCCGGACTGGTTAGGCGTTTG
GAGATTGGTGACTTCCTGATCTTGCACTTCCTGAGCCAGAACCTCAGCAC
AAGATCGTACAGTGACATGCTGCAGCAGCTCTGCGGTCTGCTAGGAGCAT
CCCGAACACCATCCGCACCATCGACCCTTGAAATGAACCGCATCAGCCAT
CCGATTTATCCGCCCGTGGAGACCTTCGGCGGTGGCAAGGAGACGGAGAC
AGCAAGCTTTCTAGACCAT
BO08857.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:52:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Inx3-RC | 1188 | CG1448-PC | 1..1185 | 17..1201 | 5925 | 100 | Plus |
Inx3-RB | 1188 | CG1448-PB | 1..1185 | 17..1201 | 5925 | 100 | Plus |
Inx3-RA | 1188 | CG1448-PA | 1..1185 | 17..1201 | 5925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:52:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Inx3-RC | 1652 | CG1448-RC | 139..1325 | 15..1201 | 5935 | 100 | Plus |
Inx3-RB | 2136 | CG1448-RB | 92..1278 | 15..1201 | 5935 | 100 | Plus |
Inx3-RA | 1605 | CG1448-RA | 92..1278 | 15..1201 | 5935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:52:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28854944..28855416 | 851..379 | 2335 | 99.6 | Minus |
3R | 32079331 | 3R | 28855732..28855942 | 389..179 | 1055 | 100 | Minus |
3R | 32079331 | 3R | 28854464..28854663 | 1201..1002 | 1000 | 100 | Minus |
3R | 32079331 | 3R | 28857142..28857307 | 180..15 | 830 | 100 | Minus |
3R | 32079331 | 3R | 28854723..28854884 | 1010..849 | 780 | 98.8 | Minus |
X | 23542271 | X | 6999832..6999959 | 738..865 | 235 | 78.9 | Plus |
X | 23542271 | X | 6974773..6974900 | 858..731 | 220 | 78.1 | Minus |
X | 23542271 | X | 6992243..6992360 | 857..740 | 185 | 77.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:52:09 has no hits.
BO08857.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:46 Download gff for
BO08857.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inx3-RA | 1..1188 | 17..1204 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:30:00 Download gff for
BO08857.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inx3-RA | 66..1262 | 9..1207 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:57 Download gff for
BO08857.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Inx3-RA | 94..1278 | 17..1203 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:47 Download gff for
BO08857.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inx3-RA | 66..1262 | 9..1207 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:56 Download gff for
BO08857.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Inx3-RA | 94..1278 | 17..1203 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:56 Download gff for
BO08857.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28855733..28855941 | 180..388 | 100 | <- | Minus |
3R | 28857143..28857305 | 17..179 | 100 | | Minus |
3R | 28854461..28854661 | 1004..1203 | 99 | <- | Minus |
3R | 28854730..28854883 | 850..1003 | 100 | <- | Minus |
3R | 28854946..28855406 | 389..849 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:57 Download gff for
BO08857.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24682865..24683027 | 17..179 | 100 | | Minus |
arm_3R | 24680452..24680605 | 850..1003 | 100 | <- | Minus |
arm_3R | 24680183..24680383 | 1004..1203 | 99 | <- | Minus |
arm_3R | 24680668..24681128 | 389..849 | 100 | <- | Minus |
arm_3R | 24681455..24681663 | 180..388 | 100 | <- | Minus |
BO08857.pep Sequence
Translation from 16 to 1219
> BO08857.pep
MAVFGMVSAVSGFIKIRYLLDKAVIDNMVFRCHYRITTAILFTCCIIVTA
NNLIGDPISCINDGAIPMHVINTFCWITYTYTIPGQQHRQIGTDVAGPGL
GNEYGQEKRYHSYYQWVPFVLFFQGLMFYVPHWVWKNMEDGKIRMITDGL
RGMVSVPDDYRRDRQDRILKYFVNSLNTHNGYSFAYFFCELLNFINVIVN
IFMVDKFLGGAFMSYGTDVLKFSNMDQDKRFDPMIEIFPRLTKCTFHKFG
PSGSVQKHDTLCVLALNILNEKIYIFLWFWFIILATISGVAVLYSLVVIM
MPTTRETIIKRSYRSAQRKEIAGLVRRLEIGDFLILHFLSQNLSTRSYSD
MLQQLCGLLGASRTPSAPSTLEMNRISHPIYPPVETFGGGKETETASFLD
H
BO08857.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Inx3-PC | 395 | CG1448-PC | 1..395 | 1..395 | 2103 | 100 | Plus |
Inx3-PB | 395 | CG1448-PB | 1..395 | 1..395 | 2103 | 100 | Plus |
Inx3-PA | 395 | CG1448-PA | 1..395 | 1..395 | 2103 | 100 | Plus |
Inx2-PD | 367 | CG4590-PD | 1..349 | 3..355 | 894 | 46.2 | Plus |
Inx2-PC | 367 | CG4590-PC | 1..349 | 3..355 | 894 | 46.2 | Plus |