Clone BO08857 Report

Search the DGRC for BO08857

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:88
Well:57
Vector:pDNR-Dual
Associated Gene/Transcriptinx3-RA
Protein status:BO08857.pep: validated full length
Sequenced Size:1219

Clone Sequence Records

BO08857.3prime Sequence

947 bp (806 high quality bases) assembled on 2006-01-09

> BO08857.3prime
ATGGTCTAGAAAGCTTGCTGTCTCCGTCTCCTTGCCACCGCCGAAGGTCT
CCACGGGCGGATAAATCGGATGGCTGATGCGGTTCATTTCAAGGGTCGAT
GGTGCGGATGGTGTTCGGGATGCTCCTAGCAGACCGCAGAGCTGCTGCAG
CATGTCACTGTACGATCTTGTGCTGAGGTTCTGGCTCAGGAAGTGCAAGA
TCAGGAAGTCACCAATCTCCAAACGCCTAACCAGTCCGGCGATTTCCTTC
CGTTGTGCCGAGCGATAAGAACGCTTGATGATGGTCTCCCGAGTGGTGGG
CATCATGATAACCACCAGTGAATAGAGCACAGCCACGCCGGAGATGGTGG
CCAAGATGATAAACCAGAACCACAGGAAGATGTAGATCTTCTCGTTGAGG
ATATTCAGTGCCAGCACACAGAGAGTGTCGTGTTTCTGGACCGATCCACT
GGGACCGAACTTGTGGAACGTGCACTTGGTGAGCCGGGGAAAGATCTCGA
TCATCGGATCGAAGCGCTTGTCCTGATCCATGTTGGAGAACTTGAGCACA
TCCGTACCGTAGGACATGAAAGCACCGCCCAGAAACTTATCCACCATAAA
GATATTCACAATCACGTTGATAAAGTTAAGCAGTTCGCAGAAAAAGTATG
CGAACGAGTAGCCGTTGTGGGTGTTCAAACTGTTCACGAAATACTTGAGG
ATCCGGTCCTGGCGATCACGCCGATAGTCATCCGGCACACTGACCATGCC
GCGCAGTCCATCGGTGATCATGCGGATCTTGCCGTCTTCCATGTTCTTCC
AAACCCAGTGGGGCACGTAGAACATGAGCCCCTGGAAGAATAGCACGAAT
GGCACCCATTGATAGTAGCTGTGATAGCGCTTCTCCTGGCCGTACTCATT
GCCCAATCCCGGGACAACCACGTCCGTTCCGATTTGCCGATGCTGCT

BO08857.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG1448-PA 1188 inx3-RA 257..1185 947..19 4570 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:58:06
Subject Length Description Subject Range Query Range Score Percent Strand
Inx3-RC 1652 CG1448-RC 397..1325 947..19 4600 99.7 Minus
Inx3-RB 2136 CG1448-RB 350..1278 947..19 4600 99.7 Minus
Inx3-RA 1605 CG1448-RA 350..1278 947..19 4600 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28854944..28855416 369..841 2335 99.6 Plus
3R 32079331 3R 28854464..28854663 19..218 1000 100 Plus
3R 32079331 3R 28854723..28854884 210..371 780 98.8 Plus
3R 32079331 3R 28855732..28855848 831..947 540 97.4 Plus
X 23542271 X 6999832..6999959 482..355 235 78.9 Minus
X 23542271 X 6974773..6974900 362..489 220 78.1 Plus
X 23542271 X 6992243..6992360 363..480 185 77.1 Plus
Blast to na_te.dros performed on 2015-02-11 23:58:02 has no hits.

BO08857.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:21 Download gff for BO08857.3prime
Subject Subject Range Query Range Percent Splice Strand
inx3-PA 257..1188 16..947 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:53:12 Download gff for BO08857.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1448-PA 257..1188 16..947 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:39:07 Download gff for BO08857.3prime
Subject Subject Range Query Range Percent Splice Strand
Inx3-RA 350..1283 13..947 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:19 Download gff for BO08857.3prime
Subject Subject Range Query Range Percent Splice Strand
Inx3-RA 350..1283 13..947 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:19 Download gff for BO08857.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 28854459..28854661 13..216 98 <- Plus
3R 28854730..28854883 217..370 100 <- Plus
3R 28854946..28855406 371..831 100 <- Plus
3R 28855733..28855848 832..947 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:39:07 Download gff for BO08857.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24680181..24680383 13..216 98 <- Plus
arm_3R 24680452..24680605 217..370 100 <- Plus
arm_3R 24680668..24681128 371..831 100 <- Plus
arm_3R 24681455..24681570 832..947 97   Plus

BO08857.5prime Sequence

865 bp (826 high quality bases) assembled on 2006-01-09

> BO08857.5prime
GAAGTTATCAGTCGACATGGCGGTCTTTGGCATGGTCTCGGCTGTGTCCG
GCTTTATCAAGATACGCTATCTGCTGGACAAGGCGGTCATCGACAACATG
GTTTTCCGCTGCCACTACAGGATCACGACGGCCATTCTGTTCACTTGTTG
CATCATCGTCACCGCAAACAATCTGATCGGCGATCCCATAAGTTGCATCA
ACGACGGCGCCATTCCGATGCACGTAATCAACACCTTCTGCTGGATCACC
TACACGTACACGATACCTGGCCAGCAGCATCGGCAAATCGGAACGGACGT
GGCTGGTCCGGGATTGGGCAATGAGTACGGCCAGGAGAAGCGCTATCACA
GCTACTATCAATGGGTGCCATTCGTGCTATTCTTCCAGGGGCTCATGTTC
TACGTGCCCCACTGGGTTTGGAAGAACATGGAAGACGGCAAGATCCGCAT
GATCACCGATGGACTGCGCGGCATGGTCAGTGTGCCGGATGACTATCGGC
GTGATCGCCAGGACCGGATCCTCAAGTATTTCGTGAACAGTTTGAACACC
CACAACGGCTACTCGTTCGCATACTTTTTCTGCGAACTGCTTAACTTTAT
CAACGTGATTGTGAATATCTTTATGGTGGATAAGTTTCTGGGCGGTGCTT
TCATGTCCTACGGTACGGATGTGCTCAAGTTCTCCAACATGGATCAGGAC
AAGCGCTTCGATCCGATGATCGAGATCTTTCCCCGGCTCACCAAGTGCAC
GTTCCACAAGTTCGGTCCCAGTGGATCGGTCCAGAAACACGACACTCTCT
GTGTGCTGGCACTGAATATCCTCAACGAGAAGATCTACATCTTCCTGTGG
GTCTGGTTTATCATC

BO08857.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG1448-PA 1188 inx3-RA 1..849 17..865 4220 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:33:13
Subject Length Description Subject Range Query Range Score Percent Strand
Inx3-RC 1652 CG1448-RC 139..989 15..865 4240 99.9 Plus
Inx3-RB 2136 CG1448-RB 92..942 15..865 4240 99.9 Plus
Inx3-RA 1605 CG1448-RA 92..942 15..865 4240 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:33:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28854945..28855416 850..379 2330 99.6 Minus
3R 32079331 3R 28855732..28855942 389..179 1055 100 Minus
3R 32079331 3R 28857142..28857307 180..15 830 100 Minus
X 23542271 X 6974773..6974900 858..731 205 77.3 Minus
Blast to na_te.dros performed on 2015-02-10 21:33:10 has no hits.

BO08857.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:22 Download gff for BO08857.5prime
Subject Subject Range Query Range Percent Splice Strand
inx3-PA 1..849 17..865 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:53:14 Download gff for BO08857.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1448-PA 1..849 17..865 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:41:14 Download gff for BO08857.5prime
Subject Subject Range Query Range Percent Splice Strand
Inx3-RA 87..942 9..865 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:21 Download gff for BO08857.5prime
Subject Subject Range Query Range Percent Splice Strand
Inx3-RA 87..942 9..865 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:21 Download gff for BO08857.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 28854946..28855406 389..849 100 <- Minus
3R 28855733..28855941 180..388 100 <- Minus
3R 28857143..28857312 9..179 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:41:14 Download gff for BO08857.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24680668..24681128 389..849 100 <- Minus
arm_3R 24681455..24681663 180..388 100 <- Minus
arm_3R 24682865..24683034 9..179 98   Minus

BO08857.complete Sequence

1219 bp (1219 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ631292

> BO08857.complete
GAAGTTATCAGTCGACATGGCGGTCTTTGGCATGGTCTCGGCTGTGTCCG
GCTTTATCAAGATACGCTATCTGCTGGACAAGGCGGTCATCGACAACATG
GTTTTCCGCTGCCACTACAGGATCACGACGGCCATTCTGTTCACTTGTTG
CATCATCGTCACCGCAAACAATCTGATCGGCGATCCCATAAGTTGCATCA
ACGACGGCGCCATTCCGATGCACGTAATCAACACCTTCTGCTGGATCACC
TACACGTACACGATACCTGGCCAGCAGCATCGGCAAATCGGAACGGACGT
GGCTGGTCCGGGATTGGGCAATGAGTACGGCCAGGAGAAGCGCTATCACA
GCTACTATCAATGGGTGCCATTCGTGCTATTCTTCCAGGGGCTCATGTTC
TACGTGCCCCACTGGGTTTGGAAGAACATGGAAGACGGCAAGATCCGCAT
GATCACCGATGGACTGCGCGGCATGGTCAGTGTGCCGGATGACTATCGGC
GTGATCGCCAGGACCGGATCCTCAAGTATTTCGTGAACAGTTTGAACACC
CACAACGGCTACTCGTTCGCATACTTTTTCTGCGAACTGCTTAACTTTAT
CAACGTGATTGTGAATATCTTTATGGTGGATAAGTTTCTGGGCGGTGCTT
TCATGTCCTACGGTACGGATGTGCTCAAGTTCTCCAACATGGATCAGGAC
AAGCGCTTCGATCCGATGATCGAGATCTTTCCCCGGCTCACCAAGTGCAC
GTTCCACAAGTTCGGTCCCAGTGGATCGGTCCAGAAACACGACACTCTCT
GTGTGCTGGCACTGAATATCCTCAACGAGAAGATCTACATCTTCCTGTGG
TTCTGGTTTATCATCTTGGCCACCATCTCCGGCGTGGCTGTGCTCTATTC
ACTGGTGGTTATCATGATGCCCACCACTCGGGAGACCATCATCAAGCGTT
CTTATCGCTCGGCACAACGGAAGGAAATCGCCGGACTGGTTAGGCGTTTG
GAGATTGGTGACTTCCTGATCTTGCACTTCCTGAGCCAGAACCTCAGCAC
AAGATCGTACAGTGACATGCTGCAGCAGCTCTGCGGTCTGCTAGGAGCAT
CCCGAACACCATCCGCACCATCGACCCTTGAAATGAACCGCATCAGCCAT
CCGATTTATCCGCCCGTGGAGACCTTCGGCGGTGGCAAGGAGACGGAGAC
AGCAAGCTTTCTAGACCAT

BO08857.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
Inx3-RC 1188 CG1448-PC 1..1185 17..1201 5925 100 Plus
Inx3-RB 1188 CG1448-PB 1..1185 17..1201 5925 100 Plus
Inx3-RA 1188 CG1448-PA 1..1185 17..1201 5925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
Inx3-RC 1652 CG1448-RC 139..1325 15..1201 5935 100 Plus
Inx3-RB 2136 CG1448-RB 92..1278 15..1201 5935 100 Plus
Inx3-RA 1605 CG1448-RA 92..1278 15..1201 5935 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:52:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28854944..28855416 851..379 2335 99.6 Minus
3R 32079331 3R 28855732..28855942 389..179 1055 100 Minus
3R 32079331 3R 28854464..28854663 1201..1002 1000 100 Minus
3R 32079331 3R 28857142..28857307 180..15 830 100 Minus
3R 32079331 3R 28854723..28854884 1010..849 780 98.8 Minus
X 23542271 X 6999832..6999959 738..865 235 78.9 Plus
X 23542271 X 6974773..6974900 858..731 220 78.1 Minus
X 23542271 X 6992243..6992360 857..740 185 77.1 Minus
Blast to na_te.dros performed on 2014-11-27 20:52:09 has no hits.

BO08857.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:46 Download gff for BO08857.complete
Subject Subject Range Query Range Percent Splice Strand
inx3-RA 1..1188 17..1204 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:30:00 Download gff for BO08857.complete
Subject Subject Range Query Range Percent Splice Strand
inx3-RA 66..1262 9..1207 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:57 Download gff for BO08857.complete
Subject Subject Range Query Range Percent Splice Strand
Inx3-RA 94..1278 17..1203 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:47 Download gff for BO08857.complete
Subject Subject Range Query Range Percent Splice Strand
inx3-RA 66..1262 9..1207 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:56 Download gff for BO08857.complete
Subject Subject Range Query Range Percent Splice Strand
Inx3-RA 94..1278 17..1203 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:56 Download gff for BO08857.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28855733..28855941 180..388 100 <- Minus
3R 28857143..28857305 17..179 100   Minus
3R 28854461..28854661 1004..1203 99 <- Minus
3R 28854730..28854883 850..1003 100 <- Minus
3R 28854946..28855406 389..849 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:57 Download gff for BO08857.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24682865..24683027 17..179 100   Minus
arm_3R 24680452..24680605 850..1003 100 <- Minus
arm_3R 24680183..24680383 1004..1203 99 <- Minus
arm_3R 24680668..24681128 389..849 100 <- Minus
arm_3R 24681455..24681663 180..388 100 <- Minus

BO08857.pep Sequence

Translation from 16 to 1219

> BO08857.pep
MAVFGMVSAVSGFIKIRYLLDKAVIDNMVFRCHYRITTAILFTCCIIVTA
NNLIGDPISCINDGAIPMHVINTFCWITYTYTIPGQQHRQIGTDVAGPGL
GNEYGQEKRYHSYYQWVPFVLFFQGLMFYVPHWVWKNMEDGKIRMITDGL
RGMVSVPDDYRRDRQDRILKYFVNSLNTHNGYSFAYFFCELLNFINVIVN
IFMVDKFLGGAFMSYGTDVLKFSNMDQDKRFDPMIEIFPRLTKCTFHKFG
PSGSVQKHDTLCVLALNILNEKIYIFLWFWFIILATISGVAVLYSLVVIM
MPTTRETIIKRSYRSAQRKEIAGLVRRLEIGDFLILHFLSQNLSTRSYSD
MLQQLCGLLGASRTPSAPSTLEMNRISHPIYPPVETFGGGKETETASFLD
H

BO08857.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
Inx3-PC 395 CG1448-PC 1..395 1..395 2103 100 Plus
Inx3-PB 395 CG1448-PB 1..395 1..395 2103 100 Plus
Inx3-PA 395 CG1448-PA 1..395 1..395 2103 100 Plus
Inx2-PD 367 CG4590-PD 1..349 3..355 894 46.2 Plus
Inx2-PC 367 CG4590-PC 1..349 3..355 894 46.2 Plus