Clone BO08859 Report

Search the DGRC for BO08859

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:88
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptRac1-RA
Protein status:BO08859.pep:
Sequenced Size:610

Clone Sequence Records

BO08859.3prime Sequence

608 bp (607 high quality bases) assembled on 2006-01-10

> BO08859.3prime
ATGGTCTAGAAAGCTTGCGAGCAGGGCGCACTTGCGCTTGGACTTGGGCT
GCAGCACGGGGCACAAAACCGACCGGATGGCCTCGTCGAAAACGGTTTTC
AGACCCTTCTGCGTCAGGGCCGAGCACTCCAGATACTTGACCGCTCCGAT
TTCCTTGGCCATGGCCAGGCCCTGCGGATAGGTGATGGGCGCCAGTTTCT
TGTCCCTCAGCTTTTCGATTGTGTTCTTGTCGTCGCGCAAATCCAGCTTG
GTGCCCACCAGGATGATGGGCGTGCTGGGGCAGTGGTGGCGCACCTCCGG
ATACCACTTGGCCCGCACGTTCTCGAACGATGCCGGATTCACCAGCGAGA
AGCAGATGAGGAAGACATCGGTCTGGGGATAAGACAGTGGCCTCAGTCGG
TCGTAGTCCTCCTGCCCGGCCGTATCCCACAGGCCCAGGTTGATGGGCTT
GGCGTCCACCATCACGTTGGCCGAGTAGTTGTCGAACACGGTGGGTATGT
ACTCGCCGGGAAAGGCATTGGTCGTGTAGCTGATCAGCAGGCAGGTCTTT
CCCACGGCTCCGTCGCCCACGACGACGCACTTGATCGCCTGCATGTCGAC
TGATAACT

BO08859.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG2248-PA 579 Rac1-RA 1..576 594..19 2880 100 Minus
CG8556-PA 579 Rac2-RA 25..206 570..389 510 91.2 Minus
CG8556-PA 579 Rac2-RA 451..518 144..77 215 92.6 Minus
CG8556-PA 579 Rac2-RA 226..305 369..290 175 88.7 Minus
CG8416-PB 579 Rho1-RB 170..201 431..400 160 100 Minus
CG8416-PC 579 Rho1-RC 170..201 431..400 160 100 Minus
CG8416-PD 579 Rho1-RD 170..201 431..400 160 100 Minus
CG8416-PE 579 Rho1-RE 170..201 431..400 160 100 Minus
CG8416-PF 579 Rho1-RF 170..201 431..400 160 100 Minus
CG8416-PG 579 Rho1-RG 170..201 431..400 160 100 Minus
CG8416-PA 579 Rho1-RA 170..201 431..400 160 100 Minus
CG12530-PA 576 Cdc42-RA 10..59 585..536 150 92 Minus
CG12530-PB 576 Cdc42-RB 10..59 585..536 150 92 Minus
CG34104-PA 1296 CG34104-RA 1175..1217 587..545 140 93 Minus
CG34104-PB 1749 CG34104-RB 1175..1217 587..545 140 93 Minus
CG12530-PA 576 Cdc42-RA 464..520 131..75 135 89.4 Minus
CG12530-PB 576 Cdc42-RB 464..520 131..75 135 89.4 Minus
CG5588-PB 588 Mtl-RB 166..212 438..392 135 91.4 Minus
CG5588-PA 588 Mtl-RA 166..212 438..392 135 91.4 Minus
CG5588-PC 588 Mtl-RC 166..212 438..392 135 91.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:00:43
Subject Length Description Subject Range Query Range Score Percent Strand
Rac1-RB 1805 CG2248-RB 337..913 595..19 2885 100 Minus
Rac1-RA 1718 CG2248-RA 337..913 595..19 2885 100 Minus
Rac2-RB 2429 CG8556-RB 680..1198 595..77 1545 86.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:00:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1301771..1302347 19..595 2885 100 Plus
3L 28110227 3L 7433993..7434511 77..595 1545 86.5 Plus
X 23542271 X 19697956..19698235 596..317 455 77.5 Minus
X 23542271 X 19698352..19698538 261..75 230 74.9 Minus
3R 32079331 3R 27638122..27638297 438..263 220 75 Minus
Blast to na_te.dros performed on 2015-02-06 11:00:39 has no hits.

BO08859.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:24 Download gff for BO08859.3prime
Subject Subject Range Query Range Percent Splice Strand
Rac1-PA 1..579 15..594 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:53:17 Download gff for BO08859.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2248-PA 1..579 15..594 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:32:00 Download gff for BO08859.3prime
Subject Subject Range Query Range Percent Splice Strand
Rac1-RA 331..916 15..599 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:41:45 Download gff for BO08859.3prime
Subject Subject Range Query Range Percent Splice Strand
Rac1-RA 331..916 15..599 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:41:45 Download gff for BO08859.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1301767..1302353 15..599 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:32:00 Download gff for BO08859.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1301767..1302353 15..599 99   Plus

BO08859.5prime Sequence

608 bp (607 high quality bases) assembled on 2006-01-09

> BO08859.5prime
GAAGTTATCAGTCGACATGCAGGCGATCAAGTGCGTCGTCGTGGGCGACG
GAGCCGTGGGAAAGACCTGCCTGCTGATCAGCTACACGACCAATGCCTTT
CCCGGCGAGTACATACCCACCGTGTTCGACAACTACTCGGCCAACGTGAT
GGTGGACGCCAAGCCCATCAACCTGGGCCTGTGGGATACGGCCGGGCAGG
AGGACTACGACCGACTGAGGCCACTGTCTTATCCCCAGACCGATGTCTTC
CTCATCTGCTTCTCGCTGGTGAATCCGGCATCGTTCGAGAACGTGCGGGC
CAAGTGGTATCCGGAGGTGCGCCACCACTGCCCCAGCACGCCCATCATCC
TGGTGGGCACCAAGCTGGATTTGCGCGACGACAAGAACACAATCGAAAAG
CTGAGGGACAAGAAACTGGCGCCCATCACCTATCCGCAGGGCCTGGCCAT
GGCCAAGGAAATCGGAGCGGTCAAGTATCTGGAGTGCTCGGCCCTGACGC
AGAAGGGTCTGAAAACCGTTTTCGACGAGGCCATCCGGTCGGTTTTGTGC
CCCGTGCTGCAGCCCAAGTCCAAGCGCAAGTGCGCCCTGCTCGCAAGCTT
TCTAGACC

BO08859.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG2248-PA 579 Rac1-RA 1..576 17..592 2880 100 Plus
CG8556-PA 579 Rac2-RA 25..206 41..222 510 91.2 Plus
CG8556-PA 579 Rac2-RA 451..518 467..534 215 92.6 Plus
CG8556-PA 579 Rac2-RA 226..305 242..321 175 88.7 Plus
CG8416-PB 579 Rho1-RB 170..201 180..211 160 100 Plus
CG8416-PC 579 Rho1-RC 170..201 180..211 160 100 Plus
CG8416-PD 579 Rho1-RD 170..201 180..211 160 100 Plus
CG8416-PE 579 Rho1-RE 170..201 180..211 160 100 Plus
CG8416-PF 579 Rho1-RF 170..201 180..211 160 100 Plus
CG8416-PG 579 Rho1-RG 170..201 180..211 160 100 Plus
CG8416-PA 579 Rho1-RA 170..201 180..211 160 100 Plus
CG12530-PA 576 Cdc42-RA 10..59 26..75 150 92 Plus
CG12530-PB 576 Cdc42-RB 10..59 26..75 150 92 Plus
CG34104-PA 1296 CG34104-RA 1175..1217 24..66 140 93 Plus
CG34104-PB 1749 CG34104-RB 1175..1217 24..66 140 93 Plus
CG12530-PA 576 Cdc42-RA 464..520 480..536 135 89.4 Plus
CG12530-PB 576 Cdc42-RB 464..520 480..536 135 89.4 Plus
CG5588-PB 588 Mtl-RB 166..212 173..219 135 91.4 Plus
CG5588-PA 588 Mtl-RA 166..212 173..219 135 91.4 Plus
CG5588-PC 588 Mtl-RC 166..212 173..219 135 91.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:55:42
Subject Length Description Subject Range Query Range Score Percent Strand
Rac1-RB 1805 CG2248-RB 337..913 16..592 2885 100 Plus
Rac1-RA 1718 CG2248-RA 337..913 16..592 2885 100 Plus
Rac2-RB 2429 CG8556-RB 680..1198 16..534 1545 86.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:55:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1301771..1302347 592..16 2885 100 Minus
3L 28110227 3L 7433993..7434511 534..16 1545 86.5 Minus
X 23542271 X 19697956..19698235 15..294 455 77.5 Plus
X 23542271 X 19698352..19698538 350..536 230 74.9 Plus
3R 32079331 3R 27638122..27638297 173..348 220 75 Plus
Blast to na_te.dros performed on 2015-02-13 07:55:40 has no hits.

BO08859.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:25 Download gff for BO08859.5prime
Subject Subject Range Query Range Percent Splice Strand
Rac1-PA 1..579 17..596 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:53:18 Download gff for BO08859.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2248-PA 1..579 17..596 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:51:31 Download gff for BO08859.5prime
Subject Subject Range Query Range Percent Splice Strand
Rac1-RA 331..916 12..596 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:03:12 Download gff for BO08859.5prime
Subject Subject Range Query Range Percent Splice Strand
Rac1-RA 331..916 12..596 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:03:12 Download gff for BO08859.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1301767..1302353 12..596 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:51:31 Download gff for BO08859.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1301767..1302353 12..596 99   Minus

BO08859.complete Sequence

610 bp assembled on 2007-06-21

GenBank Submission: FJ631293

> BO08859.complete
GAAGTTATCAGTCGACATGCAGGCGATCAAGTGCGTCGTCGTGGGCGACG
GAGCCGTGGGAAAGACCTGCCTGCTGATCAGCTACACGACCAATGCCTTT
CCCGGCGAGTACATACCCACCGTGTTCGACAACTACTCGGCCAACGTGAT
GGTGGACGCCAAGCCCATCAACCTGGGCCTGTGGGATACGGCCGGGCAGG
AGGACTACGACCGACTGAGGCCACTGTCTTATCCCCAGACCGATGTCTTC
CTCATCTGCTTCTCGCTGGTGAATCCGGCATCGTTCGAGAACGTGCGGGC
CAAGTGGTATCCGGAGGTGCGCCACCACTGCCCCAGCACGCCCATCATCC
TGGTGGGCACCAAGCTGGATTTGCGCGACGACAAGAACACAATCGAAAAG
CTGAGGGACAAGAAACTGGCGCCCATCACCTATCCGCAGGGCCTGGCCAT
GGCCAAGGAAATCGGAGCGGTCAAGTATCTGGAGTGCTCGGCCCTGACGC
AGAAGGGTCTGAAAACCGTTTTCGACGAGGCCATCCGGTCGGTTTTGTGC
CCCGTGCTGCAGCCCAAGTCCAAGCGCAAGTGCGCCCTGCTCGCAAGCTT
TCTAGACCAT

BO08859.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
Rac1-RB 579 CG2248-PB 1..576 17..592 2880 100 Plus
Rac1-RA 579 CG2248-PA 1..576 17..592 2880 100 Plus
Rac2-RB 579 CG8556-PB 1..518 17..534 1540 86.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:42:55
Subject Length Description Subject Range Query Range Score Percent Strand
Rac1-RB 1805 CG2248-RB 337..913 16..592 2885 100 Plus
Rac1-RA 1718 CG2248-RA 337..913 16..592 2885 100 Plus
Rac2-RB 2429 CG8556-RB 680..1198 16..534 1545 86.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:42:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1301771..1302347 592..16 2885 100 Minus
3L 28110227 3L 7433993..7434511 534..16 1545 86.5 Minus
X 23542271 X 19697956..19698235 15..294 455 77.5 Plus
X 23542271 X 19698352..19698538 350..536 230 74.9 Plus
3R 32079331 3R 27638122..27638297 173..348 220 75 Plus
Blast to na_te.dros performed on 2014-11-27 15:42:53 has no hits.

BO08859.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:47 Download gff for BO08859.complete
Subject Subject Range Query Range Percent Splice Strand
Rac1-RA 1..579 17..596 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:25:37 Download gff for BO08859.complete
Subject Subject Range Query Range Percent Splice Strand
Rac1-RA 331..916 12..596 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:08 Download gff for BO08859.complete
Subject Subject Range Query Range Percent Splice Strand
Rac1-RA 338..913 17..594 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:47 Download gff for BO08859.complete
Subject Subject Range Query Range Percent Splice Strand
Rac1-RA 331..916 12..596 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:38 Download gff for BO08859.complete
Subject Subject Range Query Range Percent Splice Strand
Rac1-RA 338..913 17..594 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:38 Download gff for BO08859.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1301769..1302346 17..594 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:08 Download gff for BO08859.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1301769..1302346 17..594 99   Minus

BO08859.pep Sequence

Translation from 16 to 610

> BO08859.pep
MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDAKP
INLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVNPASFENVRAKWYPE
VRHHCPSTPIILVGTKLDLRDDKNTIEKLRDKKLAPITYPQGLAMAKEIG
AVKYLECSALTQKGLKTVFDEAIRSVLCPVLQPKSKRKCALLASFLDH

BO08859.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
Rac1-PB 192 CG2248-PB 1..192 1..192 1011 100 Plus
Rac1-PA 192 CG2248-PA 1..192 1..192 1011 100 Plus
Rac2-PB 192 CG8556-PB 1..192 1..192 949 93.2 Plus
Rac2-PA 192 CG8556-PA 1..192 1..192 949 93.2 Plus
Cdc42-PD 191 CG12530-PD 1..191 1..192 721 69.8 Plus