Clone Sequence Records
BO08859.3prime Sequence
608 bp (607 high quality bases) assembled on 2006-01-10
> BO08859.3prime
ATGGTCTAGAAAGCTTGCGAGCAGGGCGCACTTGCGCTTGGACTTGGGCT
GCAGCACGGGGCACAAAACCGACCGGATGGCCTCGTCGAAAACGGTTTTC
AGACCCTTCTGCGTCAGGGCCGAGCACTCCAGATACTTGACCGCTCCGAT
TTCCTTGGCCATGGCCAGGCCCTGCGGATAGGTGATGGGCGCCAGTTTCT
TGTCCCTCAGCTTTTCGATTGTGTTCTTGTCGTCGCGCAAATCCAGCTTG
GTGCCCACCAGGATGATGGGCGTGCTGGGGCAGTGGTGGCGCACCTCCGG
ATACCACTTGGCCCGCACGTTCTCGAACGATGCCGGATTCACCAGCGAGA
AGCAGATGAGGAAGACATCGGTCTGGGGATAAGACAGTGGCCTCAGTCGG
TCGTAGTCCTCCTGCCCGGCCGTATCCCACAGGCCCAGGTTGATGGGCTT
GGCGTCCACCATCACGTTGGCCGAGTAGTTGTCGAACACGGTGGGTATGT
ACTCGCCGGGAAAGGCATTGGTCGTGTAGCTGATCAGCAGGCAGGTCTTT
CCCACGGCTCCGTCGCCCACGACGACGCACTTGATCGCCTGCATGTCGAC
TGATAACT
BO08859.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2248-PA | 579 | Rac1-RA | 1..576 | 594..19 | 2880 | 100 | Minus |
CG8556-PA | 579 | Rac2-RA | 25..206 | 570..389 | 510 | 91.2 | Minus |
CG8556-PA | 579 | Rac2-RA | 451..518 | 144..77 | 215 | 92.6 | Minus |
CG8556-PA | 579 | Rac2-RA | 226..305 | 369..290 | 175 | 88.7 | Minus |
CG8416-PB | 579 | Rho1-RB | 170..201 | 431..400 | 160 | 100 | Minus |
CG8416-PC | 579 | Rho1-RC | 170..201 | 431..400 | 160 | 100 | Minus |
CG8416-PD | 579 | Rho1-RD | 170..201 | 431..400 | 160 | 100 | Minus |
CG8416-PE | 579 | Rho1-RE | 170..201 | 431..400 | 160 | 100 | Minus |
CG8416-PF | 579 | Rho1-RF | 170..201 | 431..400 | 160 | 100 | Minus |
CG8416-PG | 579 | Rho1-RG | 170..201 | 431..400 | 160 | 100 | Minus |
CG8416-PA | 579 | Rho1-RA | 170..201 | 431..400 | 160 | 100 | Minus |
CG12530-PA | 576 | Cdc42-RA | 10..59 | 585..536 | 150 | 92 | Minus |
CG12530-PB | 576 | Cdc42-RB | 10..59 | 585..536 | 150 | 92 | Minus |
CG34104-PA | 1296 | CG34104-RA | 1175..1217 | 587..545 | 140 | 93 | Minus |
CG34104-PB | 1749 | CG34104-RB | 1175..1217 | 587..545 | 140 | 93 | Minus |
CG12530-PA | 576 | Cdc42-RA | 464..520 | 131..75 | 135 | 89.4 | Minus |
CG12530-PB | 576 | Cdc42-RB | 464..520 | 131..75 | 135 | 89.4 | Minus |
CG5588-PB | 588 | Mtl-RB | 166..212 | 438..392 | 135 | 91.4 | Minus |
CG5588-PA | 588 | Mtl-RA | 166..212 | 438..392 | 135 | 91.4 | Minus |
CG5588-PC | 588 | Mtl-RC | 166..212 | 438..392 | 135 | 91.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:00:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rac1-RB | 1805 | CG2248-RB | 337..913 | 595..19 | 2885 | 100 | Minus |
Rac1-RA | 1718 | CG2248-RA | 337..913 | 595..19 | 2885 | 100 | Minus |
Rac2-RB | 2429 | CG8556-RB | 680..1198 | 595..77 | 1545 | 86.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:00:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1301771..1302347 | 19..595 | 2885 | 100 | Plus |
3L | 28110227 | 3L | 7433993..7434511 | 77..595 | 1545 | 86.5 | Plus |
X | 23542271 | X | 19697956..19698235 | 596..317 | 455 | 77.5 | Minus |
X | 23542271 | X | 19698352..19698538 | 261..75 | 230 | 74.9 | Minus |
3R | 32079331 | 3R | 27638122..27638297 | 438..263 | 220 | 75 | Minus |
Blast to na_te.dros performed on 2015-02-06 11:00:39 has no hits.
BO08859.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:24 Download gff for
BO08859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac1-PA | 1..579 | 15..594 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:53:17 Download gff for
BO08859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2248-PA | 1..579 | 15..594 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:32:00 Download gff for
BO08859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac1-RA | 331..916 | 15..599 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:41:45 Download gff for
BO08859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac1-RA | 331..916 | 15..599 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:41:45 Download gff for
BO08859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1301767..1302353 | 15..599 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:32:00 Download gff for
BO08859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1301767..1302353 | 15..599 | 99 | | Plus |
BO08859.5prime Sequence
608 bp (607 high quality bases) assembled on 2006-01-09
> BO08859.5prime
GAAGTTATCAGTCGACATGCAGGCGATCAAGTGCGTCGTCGTGGGCGACG
GAGCCGTGGGAAAGACCTGCCTGCTGATCAGCTACACGACCAATGCCTTT
CCCGGCGAGTACATACCCACCGTGTTCGACAACTACTCGGCCAACGTGAT
GGTGGACGCCAAGCCCATCAACCTGGGCCTGTGGGATACGGCCGGGCAGG
AGGACTACGACCGACTGAGGCCACTGTCTTATCCCCAGACCGATGTCTTC
CTCATCTGCTTCTCGCTGGTGAATCCGGCATCGTTCGAGAACGTGCGGGC
CAAGTGGTATCCGGAGGTGCGCCACCACTGCCCCAGCACGCCCATCATCC
TGGTGGGCACCAAGCTGGATTTGCGCGACGACAAGAACACAATCGAAAAG
CTGAGGGACAAGAAACTGGCGCCCATCACCTATCCGCAGGGCCTGGCCAT
GGCCAAGGAAATCGGAGCGGTCAAGTATCTGGAGTGCTCGGCCCTGACGC
AGAAGGGTCTGAAAACCGTTTTCGACGAGGCCATCCGGTCGGTTTTGTGC
CCCGTGCTGCAGCCCAAGTCCAAGCGCAAGTGCGCCCTGCTCGCAAGCTT
TCTAGACC
BO08859.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2248-PA | 579 | Rac1-RA | 1..576 | 17..592 | 2880 | 100 | Plus |
CG8556-PA | 579 | Rac2-RA | 25..206 | 41..222 | 510 | 91.2 | Plus |
CG8556-PA | 579 | Rac2-RA | 451..518 | 467..534 | 215 | 92.6 | Plus |
CG8556-PA | 579 | Rac2-RA | 226..305 | 242..321 | 175 | 88.7 | Plus |
CG8416-PB | 579 | Rho1-RB | 170..201 | 180..211 | 160 | 100 | Plus |
CG8416-PC | 579 | Rho1-RC | 170..201 | 180..211 | 160 | 100 | Plus |
CG8416-PD | 579 | Rho1-RD | 170..201 | 180..211 | 160 | 100 | Plus |
CG8416-PE | 579 | Rho1-RE | 170..201 | 180..211 | 160 | 100 | Plus |
CG8416-PF | 579 | Rho1-RF | 170..201 | 180..211 | 160 | 100 | Plus |
CG8416-PG | 579 | Rho1-RG | 170..201 | 180..211 | 160 | 100 | Plus |
CG8416-PA | 579 | Rho1-RA | 170..201 | 180..211 | 160 | 100 | Plus |
CG12530-PA | 576 | Cdc42-RA | 10..59 | 26..75 | 150 | 92 | Plus |
CG12530-PB | 576 | Cdc42-RB | 10..59 | 26..75 | 150 | 92 | Plus |
CG34104-PA | 1296 | CG34104-RA | 1175..1217 | 24..66 | 140 | 93 | Plus |
CG34104-PB | 1749 | CG34104-RB | 1175..1217 | 24..66 | 140 | 93 | Plus |
CG12530-PA | 576 | Cdc42-RA | 464..520 | 480..536 | 135 | 89.4 | Plus |
CG12530-PB | 576 | Cdc42-RB | 464..520 | 480..536 | 135 | 89.4 | Plus |
CG5588-PB | 588 | Mtl-RB | 166..212 | 173..219 | 135 | 91.4 | Plus |
CG5588-PA | 588 | Mtl-RA | 166..212 | 173..219 | 135 | 91.4 | Plus |
CG5588-PC | 588 | Mtl-RC | 166..212 | 173..219 | 135 | 91.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:55:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rac1-RB | 1805 | CG2248-RB | 337..913 | 16..592 | 2885 | 100 | Plus |
Rac1-RA | 1718 | CG2248-RA | 337..913 | 16..592 | 2885 | 100 | Plus |
Rac2-RB | 2429 | CG8556-RB | 680..1198 | 16..534 | 1545 | 86.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:55:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1301771..1302347 | 592..16 | 2885 | 100 | Minus |
3L | 28110227 | 3L | 7433993..7434511 | 534..16 | 1545 | 86.5 | Minus |
X | 23542271 | X | 19697956..19698235 | 15..294 | 455 | 77.5 | Plus |
X | 23542271 | X | 19698352..19698538 | 350..536 | 230 | 74.9 | Plus |
3R | 32079331 | 3R | 27638122..27638297 | 173..348 | 220 | 75 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:55:40 has no hits.
BO08859.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:25 Download gff for
BO08859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac1-PA | 1..579 | 17..596 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:53:18 Download gff for
BO08859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2248-PA | 1..579 | 17..596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:51:31 Download gff for
BO08859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac1-RA | 331..916 | 12..596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:03:12 Download gff for
BO08859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac1-RA | 331..916 | 12..596 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:03:12 Download gff for
BO08859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1301767..1302353 | 12..596 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:51:31 Download gff for
BO08859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1301767..1302353 | 12..596 | 99 | | Minus |
BO08859.complete Sequence
610 bp assembled on 2007-06-21
GenBank Submission: FJ631293
> BO08859.complete
GAAGTTATCAGTCGACATGCAGGCGATCAAGTGCGTCGTCGTGGGCGACG
GAGCCGTGGGAAAGACCTGCCTGCTGATCAGCTACACGACCAATGCCTTT
CCCGGCGAGTACATACCCACCGTGTTCGACAACTACTCGGCCAACGTGAT
GGTGGACGCCAAGCCCATCAACCTGGGCCTGTGGGATACGGCCGGGCAGG
AGGACTACGACCGACTGAGGCCACTGTCTTATCCCCAGACCGATGTCTTC
CTCATCTGCTTCTCGCTGGTGAATCCGGCATCGTTCGAGAACGTGCGGGC
CAAGTGGTATCCGGAGGTGCGCCACCACTGCCCCAGCACGCCCATCATCC
TGGTGGGCACCAAGCTGGATTTGCGCGACGACAAGAACACAATCGAAAAG
CTGAGGGACAAGAAACTGGCGCCCATCACCTATCCGCAGGGCCTGGCCAT
GGCCAAGGAAATCGGAGCGGTCAAGTATCTGGAGTGCTCGGCCCTGACGC
AGAAGGGTCTGAAAACCGTTTTCGACGAGGCCATCCGGTCGGTTTTGTGC
CCCGTGCTGCAGCCCAAGTCCAAGCGCAAGTGCGCCCTGCTCGCAAGCTT
TCTAGACCAT
BO08859.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:42:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rac1-RB | 579 | CG2248-PB | 1..576 | 17..592 | 2880 | 100 | Plus |
Rac1-RA | 579 | CG2248-PA | 1..576 | 17..592 | 2880 | 100 | Plus |
Rac2-RB | 579 | CG8556-PB | 1..518 | 17..534 | 1540 | 86.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:42:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rac1-RB | 1805 | CG2248-RB | 337..913 | 16..592 | 2885 | 100 | Plus |
Rac1-RA | 1718 | CG2248-RA | 337..913 | 16..592 | 2885 | 100 | Plus |
Rac2-RB | 2429 | CG8556-RB | 680..1198 | 16..534 | 1545 | 86.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:42:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1301771..1302347 | 592..16 | 2885 | 100 | Minus |
3L | 28110227 | 3L | 7433993..7434511 | 534..16 | 1545 | 86.5 | Minus |
X | 23542271 | X | 19697956..19698235 | 15..294 | 455 | 77.5 | Plus |
X | 23542271 | X | 19698352..19698538 | 350..536 | 230 | 74.9 | Plus |
3R | 32079331 | 3R | 27638122..27638297 | 173..348 | 220 | 75 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:42:53 has no hits.
BO08859.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:47 Download gff for
BO08859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac1-RA | 1..579 | 17..596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:25:37 Download gff for
BO08859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac1-RA | 331..916 | 12..596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:08 Download gff for
BO08859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac1-RA | 338..913 | 17..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:47 Download gff for
BO08859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac1-RA | 331..916 | 12..596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:38 Download gff for
BO08859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac1-RA | 338..913 | 17..594 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:38 Download gff for
BO08859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1301769..1302346 | 17..594 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:08 Download gff for
BO08859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1301769..1302346 | 17..594 | 99 | | Minus |
BO08859.pep Sequence
Translation from 16 to 610
> BO08859.pep
MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDAKP
INLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVNPASFENVRAKWYPE
VRHHCPSTPIILVGTKLDLRDDKNTIEKLRDKKLAPITYPQGLAMAKEIG
AVKYLECSALTQKGLKTVFDEAIRSVLCPVLQPKSKRKCALLASFLDH
BO08859.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:39:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rac1-PB | 192 | CG2248-PB | 1..192 | 1..192 | 1011 | 100 | Plus |
Rac1-PA | 192 | CG2248-PA | 1..192 | 1..192 | 1011 | 100 | Plus |
Rac2-PB | 192 | CG8556-PB | 1..192 | 1..192 | 949 | 93.2 | Plus |
Rac2-PA | 192 | CG8556-PA | 1..192 | 1..192 | 949 | 93.2 | Plus |
Cdc42-PD | 191 | CG12530-PD | 1..191 | 1..192 | 721 | 69.8 | Plus |