Clone BO08860 Report

Search the DGRC for BO08860

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:88
Well:60
Vector:pDNR-Dual
Associated Gene/Transcriptpelo-RA
Protein status:BO08860.pep: validated full length
Sequenced Size:1219

Clone Sequence Records

BO08860.3prime Sequence

951 bp (900 high quality bases) assembled on 2006-01-10

> BO08860.3prime
ATGGTCTAGAAAGCTTGCGTCGCTATCGCTATCTGCCACCCCGCCTGCCG
CTCCATCCTCATCATCATCATCGTCGCTGTCCTCCAGTTCGGGCATCGGG
AAGCGCAGGAGGGCTGCAATTCCAGTTAGTTGAGCAAGTTGTTCTCCTGA
GATGTGCATGCTCGAAAAGATTTTGACTTCTCCCCCAGCATCGCGAATGG
ATTCGACCAGATTGACATATTCCTTTCTCAGACTAACGTCTTGGCATCTA
AAGAGGTTGTCCGAGATCAGCAGCGTTTCGATGGCCTGCGACTCGGCGGC
TTGGAGGACATGTTTCTTTCCATAGAAGGCCTTGGCGGGCTCACATTGCA
GCATCATGTAGAATTGTTCCAGGGCCTTGACCTCGCCAGCTGCCTTGGTG
TCAGACATCTTGGCCAGCACGGCGGGATCCTGTAGAATTTCTCTTAAGGA
GTGCTTAAATCCCGAGGATGCGTGCACCAGCATAAACTTGCTCTTGTTGT
CCAGCAGCAGCTTGTAATCCATTTTGACCGCCTGCTGGAACATGTAGTCA
TAGAACTGATCGCGCACGAATCCCGGCGACGCAATCAACACACACTTGAC
CACATCGAAGTTGACGTGCCGCAGGATGCTCTGCATAACCTGCTCGTAGA
ACTTGGCCAGTCCCTTCTCGTGTTGCTGGACACTGCCCTTGCGCTTGCGC
GGTATGGAGACCTCAATCTTGCTCCGCACCAGGGTCATACTGGCGGTGAT
CAGGCAGACGTGTGCTAATCCCTCCTGCATCACAACGGCGGCTACATCCG
CAGACTGTGTGGGATCGCANGCCATTTCGATGCGCTCTAAGGCAATTGTG
TCCCATTCCGGCTTACGCAGCTCGAACTTGCGATTCAGCTCCAGGTCGAG
GGTGTGATAGGCGGCCATCTTGACATACTGGTTCTCCTCGATGTTTCTGC
C

BO08860.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG3959-PA 1188 pelo-RA 253..1185 951..19 4621 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:04:14
Subject Length Description Subject Range Query Range Score Percent Strand
pelo-RA 2045 CG3959-RA 496..1428 951..19 4639 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:04:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9701364..9701874 951..441 2529 99.6 Minus
2L 23513712 2L 9701928..9702122 442..248 975 100 Minus
2L 23513712 2L 9708145..9708266 140..19 610 100 Minus
2L 23513712 2L 9706638..9706746 249..141 545 100 Minus
Blast to na_te.dros performed on 2015-02-10 23:04:10 has no hits.

BO08860.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:26 Download gff for BO08860.3prime
Subject Subject Range Query Range Percent Splice Strand
pelo-PA 253..1188 18..951 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:53:20 Download gff for BO08860.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3959-PA 253..1188 18..951 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:02:39 Download gff for BO08860.3prime
Subject Subject Range Query Range Percent Splice Strand
pelo-RA 496..1428 19..951 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:23:39 Download gff for BO08860.3prime
Subject Subject Range Query Range Percent Splice Strand
pelo-RA 496..1428 19..951 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:23:39 Download gff for BO08860.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9708145..9708266 19..140 100   Minus
2L 9701364..9701874 441..951 99 -> Minus
2L 9701930..9702122 248..440 100 -> Minus
2L 9706640..9706746 141..247 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:02:39 Download gff for BO08860.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9701364..9701874 441..951 99 -> Minus
arm_2L 9701930..9702122 248..440 100 -> Minus
arm_2L 9706640..9706746 141..247 100 -> Minus
arm_2L 9708145..9708266 19..140 100   Minus

BO08860.5prime Sequence

868 bp (774 high quality bases) assembled on 2006-01-09

> BO08860.5prime
GAAGTTATCAGTCGACATGAAGCTGCTGGGCAAATACGTGGACAAGGGCA
TGCAGGGAAATGTGACCCTGGTGCCGGAGGAGTCCGAGGATATGTGGCAC
GCCTACAATTTGATTGCGAAAGGCGACAGCGTGCGCAGCACCACTATTCG
CAAGGTGCAGAATGAAACGGCTACTGGCTCCTCCACCAGCAGCCGGGTGC
GCACCACACTAACCATCGCAGTGGAGAGCATAGATTTTGATACGCAGGCT
TGTGTGCTCCGCCTTAAAGGCAGAAACATCGAGGAGAACCAGTATGTCAA
GATGGGCGCCTATCACACCCTCGACCTGGAGCTGAATCGCAAGTTCGAGC
TGCGTAAGCCGGAATGGGACACAATTGCCTTAGAGCGCATCGAAATGGCC
TGCGATCCCACACAGTCTGCGGATGTAGCCGCCGTTGTGATGCAGGAGGG
ATTAGCACACGTCTGCCTGATCACCGCCAGTATGACCCTGGTGCGGAGCA
AGATTGAGGTCTCCATACCGCGCAAGCGCAAGGGCAGTGTCCAGCAACAC
GAGAAGGGACTGGCCAAGTTCTACGAGCAGGTTATGCAGAGCATCCTGCG
GCACGTCAACTTCGATGTGGTCAAGTGTGTGTTGATTGCGTCGCCGGGAT
TCGTGCGCGATCAGTTCTATGACTACATGTTCCAGCAGGCGGTCAAAATG
GATTACAAGCTGCTGCTGGACAACAAGAGCAAGTTTATGCTGGTGCACGC
ATCCTCGGGATTTAAGCACTCCTTAAGAGAAATTCTACAGGATCCCGCCG
TGCTGGCCAAGATGTCTGACACCAAGGCAGCTGGCGAGGTCAAGGCCCTG
GAACATTCTACATGATGC

BO08860.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3959-PA 1188 pelo-RA 1..839 17..855 4195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:16:28
Subject Length Description Subject Range Query Range Score Percent Strand
pelo-RA 2045 CG3959-RA 244..1096 17..868 4240 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:16:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9701152..9701874 57..779 3615 100 Plus
2L 23513712 2L 9701928..9702019 778..868 410 98.9 Plus
2L 23513712 2L 9701053..9701093 17..57 205 100 Plus
Blast to na_te.dros performed on 2015-02-10 03:16:24 has no hits.

BO08860.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:27 Download gff for BO08860.5prime
Subject Subject Range Query Range Percent Splice Strand
pelo-PA 1..853 17..868 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:53:21 Download gff for BO08860.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3959-PA 1..853 17..868 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:42:56 Download gff for BO08860.5prime
Subject Subject Range Query Range Percent Splice Strand
pelo-RA 237..1096 10..868 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:14:55 Download gff for BO08860.5prime
Subject Subject Range Query Range Percent Splice Strand
pelo-RA 237..1096 10..868 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:14:55 Download gff for BO08860.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9701048..9701093 14..57 91 -> Plus
2L 9701153..9701874 58..779 100 -> Plus
2L 9701930..9702019 780..868 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:42:56 Download gff for BO08860.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9701048..9701093 14..57 91 -> Plus
arm_2L 9701153..9701874 58..779 100 -> Plus
arm_2L 9701930..9702019 780..868 98   Plus

BO08860.complete Sequence

1219 bp (1219 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ631294

> BO08860.complete
GAAGTTATCAGTCGACATGAAGCTGCTGGGCAAATACGTGGACAAGGGCA
TGCAGGGAAATGTGACCCTGGTGCCGGAGGAGTCCGAGGATATGTGGCAC
GCCTACAATTTGATTGCGAAAGGCGACAGCGTGCGCAGCACCACTATTCG
CAAGGTGCAGAATGAAACGGCTACTGGCTCCTCCACCAGCAGCCGGGTGC
GCACCACACTAACCATCGCAGTGGAGAGCATAGATTTTGATACGCAGGCT
TGTGTGCTCCGCCTTAAAGGCAGAAACATCGAGGAGAACCAGTATGTCAA
GATGGGCGCCTATCACACCCTCGACCTGGAGCTGAATCGCAAGTTCGAGC
TGCGTAAGCCGGAATGGGACACAATTGCCTTAGAGCGCATCGAAATGGCC
TGCGATCCCACACAGTCTGCGGATGTAGCCGCCGTTGTGATGCAGGAGGG
ATTAGCACACGTCTGCCTGATCACCGCCAGTATGACCCTGGTGCGGAGCA
AGATTGAGGTCTCCATACCGCGCAAGCGCAAGGGCAGTGTCCAGCAACAC
GAGAAGGGACTGGCCAAGTTCTACGAGCAGGTTATGCAGAGCATCCTGCG
GCACGTCAACTTCGATGTGGTCAAGTGTGTGTTGATTGCGTCGCCGGGAT
TCGTGCGCGATCAGTTCTATGACTACATGTTCCAGCAGGCGGTCAAAATG
GATTACAAGCTGCTGCTGGACAACAAGAGCAAGTTTATGCTGGTGCACGC
ATCCTCGGGATTTAAGCACTCCTTAAGAGAAATTCTACAGGATCCCGCCG
TGCTGGCCAAGATGTCTGACACCAAGGCAGCTGGCGAGGTCAAGGCCCTG
GAACAATTCTACATGATGCTGCAATGTGAGCCCGCCAAGGCCTTCTATGG
AAAGAAACATGTCCTCCAAGCCGCCGAGTCGCAGGCCATCGAAACGCTGC
TGATCTCGGACAACCTCTTTAGATGCCAAGACGTTAGTCTGAGAAAGGAA
TATGTCAATCTGGTCGAATCCATTCGCGATGCTGGGGGAGAAGTCAAAAT
CTTTTCGAGCATGCACATCTCAGGAGAACAACTTGCTCAACTAACTGGAA
TTGCAGCCCTCCTGCGCTTCCCGATGCCCGAACTGGAGGACAGCGACGAT
GATGATGATGAGGATGGAGCGGCAGGCGGGGTGGCAGATAGCGATAGCGA
CGCAAGCTTTCTAGACCAT

BO08860.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:52:12
Subject Length Description Subject Range Query Range Score Percent Strand
pelo-RA 1188 CG3959-PA 1..1185 17..1201 5925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:52:14
Subject Length Description Subject Range Query Range Score Percent Strand
pelo-RA 2045 CG3959-RA 244..1428 17..1201 5925 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:52:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9701152..9701874 57..779 3615 100 Plus
2L 23513712 2L 9701928..9702122 778..972 975 100 Plus
2L 23513712 2L 9708145..9708266 1080..1201 610 100 Plus
2L 23513712 2L 9706638..9706746 971..1079 545 100 Plus
2L 23513712 2L 9701053..9701093 17..57 205 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:52:11 has no hits.

BO08860.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:48 Download gff for BO08860.complete
Subject Subject Range Query Range Percent Splice Strand
pelo-RA 1..1188 17..1202 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:30:01 Download gff for BO08860.complete
Subject Subject Range Query Range Percent Splice Strand
pelo-RA 251..1442 10..1201 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:48 Download gff for BO08860.complete
Subject Subject Range Query Range Percent Splice Strand
pelo-RA 244..1428 17..1203 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:48 Download gff for BO08860.complete
Subject Subject Range Query Range Percent Splice Strand
pelo-RA 251..1442 10..1201 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:33:19 Download gff for BO08860.complete
Subject Subject Range Query Range Percent Splice Strand
pelo-RA 244..1428 17..1203 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:33:19 Download gff for BO08860.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9701053..9701093 17..57 100 -> Plus
2L 9701153..9701874 58..779 100 -> Plus
2L 9701930..9702122 780..972 100 -> Plus
2L 9706640..9706746 973..1079 100 -> Plus
2L 9708145..9708266 1080..1203 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:48 Download gff for BO08860.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9701053..9701093 17..57 100 -> Plus
arm_2L 9701153..9701874 58..779 100 -> Plus
arm_2L 9701930..9702122 780..972 100 -> Plus
arm_2L 9706640..9706746 973..1079 100 -> Plus
arm_2L 9708145..9708266 1080..1203 98   Plus

BO08860.pep Sequence

Translation from 16 to 1219

> BO08860.pep
MKLLGKYVDKGMQGNVTLVPEESEDMWHAYNLIAKGDSVRSTTIRKVQNE
TATGSSTSSRVRTTLTIAVESIDFDTQACVLRLKGRNIEENQYVKMGAYH
TLDLELNRKFELRKPEWDTIALERIEMACDPTQSADVAAVVMQEGLAHVC
LITASMTLVRSKIEVSIPRKRKGSVQQHEKGLAKFYEQVMQSILRHVNFD
VVKCVLIASPGFVRDQFYDYMFQQAVKMDYKLLLDNKSKFMLVHASSGFK
HSLREILQDPAVLAKMSDTKAAGEVKALEQFYMMLQCEPAKAFYGKKHVL
QAAESQAIETLLISDNLFRCQDVSLRKEYVNLVESIRDAGGEVKIFSSMH
ISGEQLAQLTGIAALLRFPMPELEDSDDDDDEDGAAGGVADSDSDASFLD
H

BO08860.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
pelo-PA 395 CG3959-PA 1..395 1..395 1999 100 Plus