Clone Sequence Records
BO08860.3prime Sequence
951 bp (900 high quality bases) assembled on 2006-01-10
> BO08860.3prime
ATGGTCTAGAAAGCTTGCGTCGCTATCGCTATCTGCCACCCCGCCTGCCG
CTCCATCCTCATCATCATCATCGTCGCTGTCCTCCAGTTCGGGCATCGGG
AAGCGCAGGAGGGCTGCAATTCCAGTTAGTTGAGCAAGTTGTTCTCCTGA
GATGTGCATGCTCGAAAAGATTTTGACTTCTCCCCCAGCATCGCGAATGG
ATTCGACCAGATTGACATATTCCTTTCTCAGACTAACGTCTTGGCATCTA
AAGAGGTTGTCCGAGATCAGCAGCGTTTCGATGGCCTGCGACTCGGCGGC
TTGGAGGACATGTTTCTTTCCATAGAAGGCCTTGGCGGGCTCACATTGCA
GCATCATGTAGAATTGTTCCAGGGCCTTGACCTCGCCAGCTGCCTTGGTG
TCAGACATCTTGGCCAGCACGGCGGGATCCTGTAGAATTTCTCTTAAGGA
GTGCTTAAATCCCGAGGATGCGTGCACCAGCATAAACTTGCTCTTGTTGT
CCAGCAGCAGCTTGTAATCCATTTTGACCGCCTGCTGGAACATGTAGTCA
TAGAACTGATCGCGCACGAATCCCGGCGACGCAATCAACACACACTTGAC
CACATCGAAGTTGACGTGCCGCAGGATGCTCTGCATAACCTGCTCGTAGA
ACTTGGCCAGTCCCTTCTCGTGTTGCTGGACACTGCCCTTGCGCTTGCGC
GGTATGGAGACCTCAATCTTGCTCCGCACCAGGGTCATACTGGCGGTGAT
CAGGCAGACGTGTGCTAATCCCTCCTGCATCACAACGGCGGCTACATCCG
CAGACTGTGTGGGATCGCANGCCATTTCGATGCGCTCTAAGGCAATTGTG
TCCCATTCCGGCTTACGCAGCTCGAACTTGCGATTCAGCTCCAGGTCGAG
GGTGTGATAGGCGGCCATCTTGACATACTGGTTCTCCTCGATGTTTCTGC
C
BO08860.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3959-PA | 1188 | pelo-RA | 253..1185 | 951..19 | 4621 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:04:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pelo-RA | 2045 | CG3959-RA | 496..1428 | 951..19 | 4639 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:04:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9701364..9701874 | 951..441 | 2529 | 99.6 | Minus |
2L | 23513712 | 2L | 9701928..9702122 | 442..248 | 975 | 100 | Minus |
2L | 23513712 | 2L | 9708145..9708266 | 140..19 | 610 | 100 | Minus |
2L | 23513712 | 2L | 9706638..9706746 | 249..141 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:04:10 has no hits.
BO08860.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:26 Download gff for
BO08860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pelo-PA | 253..1188 | 18..951 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:53:20 Download gff for
BO08860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3959-PA | 253..1188 | 18..951 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:02:39 Download gff for
BO08860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pelo-RA | 496..1428 | 19..951 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:23:39 Download gff for
BO08860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pelo-RA | 496..1428 | 19..951 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:23:39 Download gff for
BO08860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9708145..9708266 | 19..140 | 100 | | Minus |
2L | 9701364..9701874 | 441..951 | 99 | -> | Minus |
2L | 9701930..9702122 | 248..440 | 100 | -> | Minus |
2L | 9706640..9706746 | 141..247 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:02:39 Download gff for
BO08860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9701364..9701874 | 441..951 | 99 | -> | Minus |
arm_2L | 9701930..9702122 | 248..440 | 100 | -> | Minus |
arm_2L | 9706640..9706746 | 141..247 | 100 | -> | Minus |
arm_2L | 9708145..9708266 | 19..140 | 100 | | Minus |
BO08860.5prime Sequence
868 bp (774 high quality bases) assembled on 2006-01-09
> BO08860.5prime
GAAGTTATCAGTCGACATGAAGCTGCTGGGCAAATACGTGGACAAGGGCA
TGCAGGGAAATGTGACCCTGGTGCCGGAGGAGTCCGAGGATATGTGGCAC
GCCTACAATTTGATTGCGAAAGGCGACAGCGTGCGCAGCACCACTATTCG
CAAGGTGCAGAATGAAACGGCTACTGGCTCCTCCACCAGCAGCCGGGTGC
GCACCACACTAACCATCGCAGTGGAGAGCATAGATTTTGATACGCAGGCT
TGTGTGCTCCGCCTTAAAGGCAGAAACATCGAGGAGAACCAGTATGTCAA
GATGGGCGCCTATCACACCCTCGACCTGGAGCTGAATCGCAAGTTCGAGC
TGCGTAAGCCGGAATGGGACACAATTGCCTTAGAGCGCATCGAAATGGCC
TGCGATCCCACACAGTCTGCGGATGTAGCCGCCGTTGTGATGCAGGAGGG
ATTAGCACACGTCTGCCTGATCACCGCCAGTATGACCCTGGTGCGGAGCA
AGATTGAGGTCTCCATACCGCGCAAGCGCAAGGGCAGTGTCCAGCAACAC
GAGAAGGGACTGGCCAAGTTCTACGAGCAGGTTATGCAGAGCATCCTGCG
GCACGTCAACTTCGATGTGGTCAAGTGTGTGTTGATTGCGTCGCCGGGAT
TCGTGCGCGATCAGTTCTATGACTACATGTTCCAGCAGGCGGTCAAAATG
GATTACAAGCTGCTGCTGGACAACAAGAGCAAGTTTATGCTGGTGCACGC
ATCCTCGGGATTTAAGCACTCCTTAAGAGAAATTCTACAGGATCCCGCCG
TGCTGGCCAAGATGTCTGACACCAAGGCAGCTGGCGAGGTCAAGGCCCTG
GAACATTCTACATGATGC
BO08860.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3959-PA | 1188 | pelo-RA | 1..839 | 17..855 | 4195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:16:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pelo-RA | 2045 | CG3959-RA | 244..1096 | 17..868 | 4240 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:16:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9701152..9701874 | 57..779 | 3615 | 100 | Plus |
2L | 23513712 | 2L | 9701928..9702019 | 778..868 | 410 | 98.9 | Plus |
2L | 23513712 | 2L | 9701053..9701093 | 17..57 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 03:16:24 has no hits.
BO08860.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:27 Download gff for
BO08860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pelo-PA | 1..853 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:53:21 Download gff for
BO08860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3959-PA | 1..853 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:42:56 Download gff for
BO08860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pelo-RA | 237..1096 | 10..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:14:55 Download gff for
BO08860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pelo-RA | 237..1096 | 10..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:14:55 Download gff for
BO08860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9701048..9701093 | 14..57 | 91 | -> | Plus |
2L | 9701153..9701874 | 58..779 | 100 | -> | Plus |
2L | 9701930..9702019 | 780..868 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:42:56 Download gff for
BO08860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9701048..9701093 | 14..57 | 91 | -> | Plus |
arm_2L | 9701153..9701874 | 58..779 | 100 | -> | Plus |
arm_2L | 9701930..9702019 | 780..868 | 98 | | Plus |
BO08860.complete Sequence
1219 bp (1219 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631294
> BO08860.complete
GAAGTTATCAGTCGACATGAAGCTGCTGGGCAAATACGTGGACAAGGGCA
TGCAGGGAAATGTGACCCTGGTGCCGGAGGAGTCCGAGGATATGTGGCAC
GCCTACAATTTGATTGCGAAAGGCGACAGCGTGCGCAGCACCACTATTCG
CAAGGTGCAGAATGAAACGGCTACTGGCTCCTCCACCAGCAGCCGGGTGC
GCACCACACTAACCATCGCAGTGGAGAGCATAGATTTTGATACGCAGGCT
TGTGTGCTCCGCCTTAAAGGCAGAAACATCGAGGAGAACCAGTATGTCAA
GATGGGCGCCTATCACACCCTCGACCTGGAGCTGAATCGCAAGTTCGAGC
TGCGTAAGCCGGAATGGGACACAATTGCCTTAGAGCGCATCGAAATGGCC
TGCGATCCCACACAGTCTGCGGATGTAGCCGCCGTTGTGATGCAGGAGGG
ATTAGCACACGTCTGCCTGATCACCGCCAGTATGACCCTGGTGCGGAGCA
AGATTGAGGTCTCCATACCGCGCAAGCGCAAGGGCAGTGTCCAGCAACAC
GAGAAGGGACTGGCCAAGTTCTACGAGCAGGTTATGCAGAGCATCCTGCG
GCACGTCAACTTCGATGTGGTCAAGTGTGTGTTGATTGCGTCGCCGGGAT
TCGTGCGCGATCAGTTCTATGACTACATGTTCCAGCAGGCGGTCAAAATG
GATTACAAGCTGCTGCTGGACAACAAGAGCAAGTTTATGCTGGTGCACGC
ATCCTCGGGATTTAAGCACTCCTTAAGAGAAATTCTACAGGATCCCGCCG
TGCTGGCCAAGATGTCTGACACCAAGGCAGCTGGCGAGGTCAAGGCCCTG
GAACAATTCTACATGATGCTGCAATGTGAGCCCGCCAAGGCCTTCTATGG
AAAGAAACATGTCCTCCAAGCCGCCGAGTCGCAGGCCATCGAAACGCTGC
TGATCTCGGACAACCTCTTTAGATGCCAAGACGTTAGTCTGAGAAAGGAA
TATGTCAATCTGGTCGAATCCATTCGCGATGCTGGGGGAGAAGTCAAAAT
CTTTTCGAGCATGCACATCTCAGGAGAACAACTTGCTCAACTAACTGGAA
TTGCAGCCCTCCTGCGCTTCCCGATGCCCGAACTGGAGGACAGCGACGAT
GATGATGATGAGGATGGAGCGGCAGGCGGGGTGGCAGATAGCGATAGCGA
CGCAAGCTTTCTAGACCAT
BO08860.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:52:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pelo-RA | 1188 | CG3959-PA | 1..1185 | 17..1201 | 5925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:52:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pelo-RA | 2045 | CG3959-RA | 244..1428 | 17..1201 | 5925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:52:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9701152..9701874 | 57..779 | 3615 | 100 | Plus |
2L | 23513712 | 2L | 9701928..9702122 | 778..972 | 975 | 100 | Plus |
2L | 23513712 | 2L | 9708145..9708266 | 1080..1201 | 610 | 100 | Plus |
2L | 23513712 | 2L | 9706638..9706746 | 971..1079 | 545 | 100 | Plus |
2L | 23513712 | 2L | 9701053..9701093 | 17..57 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:52:11 has no hits.
BO08860.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:48 Download gff for
BO08860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pelo-RA | 1..1188 | 17..1202 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:30:01 Download gff for
BO08860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pelo-RA | 251..1442 | 10..1201 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:48 Download gff for
BO08860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pelo-RA | 244..1428 | 17..1203 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:48 Download gff for
BO08860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pelo-RA | 251..1442 | 10..1201 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:33:19 Download gff for
BO08860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pelo-RA | 244..1428 | 17..1203 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:33:19 Download gff for
BO08860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9701053..9701093 | 17..57 | 100 | -> | Plus |
2L | 9701153..9701874 | 58..779 | 100 | -> | Plus |
2L | 9701930..9702122 | 780..972 | 100 | -> | Plus |
2L | 9706640..9706746 | 973..1079 | 100 | -> | Plus |
2L | 9708145..9708266 | 1080..1203 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:48 Download gff for
BO08860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9701053..9701093 | 17..57 | 100 | -> | Plus |
arm_2L | 9701153..9701874 | 58..779 | 100 | -> | Plus |
arm_2L | 9701930..9702122 | 780..972 | 100 | -> | Plus |
arm_2L | 9706640..9706746 | 973..1079 | 100 | -> | Plus |
arm_2L | 9708145..9708266 | 1080..1203 | 98 | | Plus |
BO08860.pep Sequence
Translation from 16 to 1219
> BO08860.pep
MKLLGKYVDKGMQGNVTLVPEESEDMWHAYNLIAKGDSVRSTTIRKVQNE
TATGSSTSSRVRTTLTIAVESIDFDTQACVLRLKGRNIEENQYVKMGAYH
TLDLELNRKFELRKPEWDTIALERIEMACDPTQSADVAAVVMQEGLAHVC
LITASMTLVRSKIEVSIPRKRKGSVQQHEKGLAKFYEQVMQSILRHVNFD
VVKCVLIASPGFVRDQFYDYMFQQAVKMDYKLLLDNKSKFMLVHASSGFK
HSLREILQDPAVLAKMSDTKAAGEVKALEQFYMMLQCEPAKAFYGKKHVL
QAAESQAIETLLISDNLFRCQDVSLRKEYVNLVESIRDAGGEVKIFSSMH
ISGEQLAQLTGIAALLRFPMPELEDSDDDDDEDGAAGGVADSDSDASFLD
H
BO08860.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pelo-PA | 395 | CG3959-PA | 1..395 | 1..395 | 1999 | 100 | Plus |