Clone Sequence Records
BO08866.3prime Sequence
936 bp (830 high quality bases) assembled on 2006-01-10
> BO08866.3prime
ATGGTCTAGAAAGCTTGCATCACTATCATCCGAAGAAATCTCCTGAGCTT
CCTCCCCTGCTTCCGCTTTATCCTCCTTTTTCCCAAATTCCTCCTCCTCA
TCACTATCTGAGTTTTCCATTGGGTTTGTCTTGAGGCGAGCTATCAGCTC
TTTGGCGGGATTGAAAATACCATTTGTTTGCTGGGAACAGATGATGCAGC
GCTGTGACTTTTTGTACTGGGCCAAGGCGCACTTTTCACAGAAATAGTGC
TTGCACTTTGTTACCACGGGATTGACAAAACTCTGTCGGCAGATGTGGCA
CTTGAAAGGCAGTGTTTCTTCATCGGAGTGAATCTCATACTTGGTATCAT
CGCCATCGGAGTCTACATCACCCGTTCGCTGATTTTCGTGATCCATTTCC
AATTGCCAGCCCGCTTTGTAATCACTGCGATCGTGCAGAAACTTACAGCT
GTCGCCAAAGCCGCAATATCCTGTTTCCTTGTAATCCTTGCATATATCCG
GCTGATAATCCCACCTGACAGTGGCCCTAAGATGGGCAGGAGCCCTAATT
GGGCCACTTCGTACCATTCCGGAGCTGGCATTCCCTGCCGCTGTATCCTG
CTTCTTGTAGTACTGCGCATAGTTGTTAATTCCGCGATAGATCTTATCGT
CCGCCTTGCCCTCCAGCTCTTCGTTGATTTTCAGAGCTCGCGCATGAATT
GCCTGCGCATCGCGATCCAATTCTGTGTCCATTTCGTTAATCGATGTAGC
TCCCTGATCTTGGGGTCCACTGGGCAGCGCCTCGCGTTTGGATTTGTACG
CAATGCCCAGTTTATCATCGTCGGAGGCTGAGGATGAGCCATCATCACCA
ACTCCCTCCCGCCTGTCTCTTTGCTTTGCTCATTGTCTTGGTGCTCTGGA
AGTTGGGATTCGTGCGCTTTCGGCGGTTCTCGGCTC
BO08866.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4973-PA | 1074 | CG4973-RA | 235..1071 | 855..19 | 4185 | 100 | Minus |
CG4973-PA | 1074 | CG4973-RA | 155..236 | 936..855 | 410 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:00:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdlc-RA | 1419 | CG4973-RA | 261..1177 | 936..19 | 4565 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:00:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20058066..20058746 | 936..255 | 3360 | 99.9 | Minus |
3R | 32079331 | 3R | 20058812..20059049 | 256..19 | 1190 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 11:00:27 has no hits.
BO08866.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:37 Download gff for
BO08866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4973-PA | 155..1074 | 15..936 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:53:33 Download gff for
BO08866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4973-PA | 155..1074 | 15..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:31:59 Download gff for
BO08866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4973-RA | 261..1180 | 15..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:41:43 Download gff for
BO08866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mdlc-RA | 261..1180 | 15..936 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:41:43 Download gff for
BO08866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20058066..20058744 | 257..936 | 99 | -> | Minus |
3R | 20058812..20059052 | 15..256 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:31:59 Download gff for
BO08866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15883788..15884466 | 257..936 | 99 | -> | Minus |
arm_3R | 15884534..15884774 | 15..256 | 99 | | Minus |
BO08866.5prime Sequence
961 bp (822 high quality bases) assembled on 2006-01-09
> BO08866.5prime
GAAGTTATCAGTCGACATGTCGGAAGAAGCGGCTAGCACCTCGTCCTTTG
GCTTCAAGAAGCGGAACCTCAAGAAGGGAGCTGGAATTCGTCGCAAAAAG
GAAACCAGCAGTGATGAATCTGCAAAAAGCAGCGATGAAGAGACCAAAGG
CAAAGCCAGTGCTCTGGTGCGAGCCGAGAACCGCCGAAAGCGCACGAATC
CCAACTTCCAGAGCACCAAGACAATGAGCAAAGCAAAGAGACAGGCGGGA
GGAGTTGGTGATGATGGCTCATCCTCAGCCTCCGACGATGATAAACTGGG
CATTGCGTACAAATCCAAACGCGAGGCGCTGCCCAGTGGACCCCAAGATC
AGGGAGCTACATCGATTAACGAAATGGACACAGAATTGGATCGCGATGCG
CAGGCAATTCATGCGCGAGCTCTGAAAATCAACGAAGAGCTGGAGGGCAA
GGCGGACGATAAGATCTATCGCGGAATTAACAACTATGCGCAGTACTACA
AGAAGCAGGATACAGCGGCAGGGAATGCCAGCTCCGGAATGGTACGAAGT
GGCCCAATTAGGGCTCCTGCCCATCTTAGGGCCACTGTCAGGTGGGATTA
TCAGCCGGATATATGCAAGGATTACAAGGAAACAGGATATTGCGGCTTTG
GCGACAGCTGTAAGTTTCTGCACGATCGCAGTGATTACAAAGCGGGCTGG
CAATTGGAAATGGATCACGAAAATCAGCGAACGGGTGATGTAGACTCCGA
TGGCGATGATACCAAGTATGAGATTCACTCCGATGAAGAAACACTGCCTT
TCAAGTGCCACATCTGCCGACAGAGTTTTGTCAATCCCGTGGTAACAAAG
TGCAAGCACTATTTCTGTGAAAAGTGCGCCTTGGCCCAGTACAAAAAGTC
ACAGCGCTGCATCATCTGTTCCCAGCAAACAAATGGTATTTTCAATCCCG
CCAAAGAGCTG
BO08866.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4973-PA | 1074 | CG4973-RA | 1..945 | 17..961 | 4725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:11:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdlc-RA | 1419 | CG4973-RA | 107..1051 | 17..961 | 4725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:10:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20058017..20058746 | 122..851 | 3650 | 100 | Plus |
3R | 32079331 | 3R | 20058812..20058923 | 850..961 | 560 | 100 | Plus |
3R | 32079331 | 3R | 20057854..20057959 | 17..122 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:10:59 has no hits.
BO08866.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:38 Download gff for
BO08866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4973-PA | 1..945 | 17..961 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:53:35 Download gff for
BO08866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4973-PA | 1..945 | 17..961 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:53:04 Download gff for
BO08866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4973-RA | 105..1051 | 14..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:48:53 Download gff for
BO08866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mdlc-RA | 105..1051 | 14..961 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:48:53 Download gff for
BO08866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20057852..20057959 | 14..122 | 99 | -> | Plus |
3R | 20058018..20058744 | 123..849 | 100 | -> | Plus |
3R | 20058812..20058923 | 850..961 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:53:04 Download gff for
BO08866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15883574..15883681 | 14..122 | 99 | -> | Plus |
arm_3R | 15883740..15884466 | 123..849 | 100 | -> | Plus |
arm_3R | 15884534..15884645 | 850..961 | 100 | | Plus |
BO08866.complete Sequence
1105 bp (1105 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631296
> BO08866.complete
GAAGTTATCAGTCGACATGTCGGAAGAAGCGGCTAGCACCTCGTCCTTTG
GCTTCAAGAAGCGGAACCTCAAGAAGGGAGCTGGAATTCGTCGCAAAAAG
GAAACCAGCAGTGATGAATCTGCAAAAAGCAGCGATGAAGAGACCAAAGG
CAAAGCCAGTGCTCTGGTGCGAGCCGAGAACCGCCGAAAGCGCACGAATC
CCAACTTCCAGAGCACCAAGACAATGAGCAAAGCAAAGAGACAGGCGGGA
GGAGTTGGTGATGATGGCTCATCCTCAGCCTCCGACGATGATAAACTGGG
CATTGCGTACAAATCCAAACGCGAGGCGCTGCCCAGTGGACCCCAAGATC
AGGGAGCTACATCGATTAACGAAATGGACACAGAATTGGATCGCGATGCG
CAGGCAATTCATGCGCGAGCTCTGAAAATCAACGAAGAGCTGGAGGGCAA
GGCGGACGATAAGATCTATCGCGGAATTAACAACTATGCGCAGTACTACA
AGAAGCAGGATACAGCGGCAGGGAATGCCAGCTCCGGAATGGTACGAAGT
GGCCCAATTAGGGCTCCTGCCCATCTTAGGGCCACTGTCAGGTGGGATTA
TCAGCCGGATATATGCAAGGATTACAAGGAAACAGGATATTGCGGCTTTG
GCGACAGCTGTAAGTTTCTGCACGATCGCAGTGATTACAAAGCGGGCTGG
CAATTGGAAATGGATCACGAAAATCAGCGAACGGGTGATGTAGACTCCGA
TGGCGATGATACCAAGTATGAGATTCACTCCGATGAAGAAACACTGCCTT
TCAAGTGCCACATCTGCCGACAGAGTTTTGTCAATCCCGTGGTAACAAAG
TGCAAGCACTATTTCTGTGAAAAGTGCGCCTTGGCCCAGTACAAAAAGTC
ACAGCGCTGCATCATCTGTTCCCAGCAAACAAATGGTATTTTCAATCCCG
CCAAAGAGCTGATAGCTCGCCTCAAGACAAACCCAATGGAAAACTCAGAT
AGTGATGAGGAGGAGGAATTTGGGAAAAAGGAGGATAAAGCGGAAGCAGG
GGAGGAAGCTCAGGAGATTTCTTCGGATGATAGTGATGCAAGCTTTCTAG
ACCAT
BO08866.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:04:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdlc-RA | 1074 | CG4973-PA | 1..1071 | 17..1087 | 5355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:04:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdlc-RA | 1419 | CG4973-RA | 107..1177 | 17..1087 | 5355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:04:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20058017..20058746 | 122..851 | 3650 | 100 | Plus |
3R | 32079331 | 3R | 20058812..20059049 | 850..1087 | 1190 | 100 | Plus |
3R | 32079331 | 3R | 20057854..20057959 | 17..122 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:04:46 has no hits.
BO08866.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:52 Download gff for
BO08866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4973-RA | 1..1074 | 17..1091 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:30:06 Download gff for
BO08866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4973-RA | 103..1178 | 14..1091 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:15:22 Download gff for
BO08866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4973-RA | 107..1177 | 17..1089 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:52 Download gff for
BO08866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4973-RA | 103..1178 | 14..1091 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:24 Download gff for
BO08866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mdlc-RA | 107..1177 | 17..1089 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:12:24 Download gff for
BO08866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20057854..20057959 | 17..122 | 100 | -> | Plus |
3R | 20058018..20058744 | 123..849 | 100 | -> | Plus |
3R | 20058812..20059049 | 850..1089 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:15:22 Download gff for
BO08866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15883576..15883681 | 17..122 | 100 | -> | Plus |
arm_3R | 15883740..15884466 | 123..849 | 100 | -> | Plus |
arm_3R | 15884534..15884771 | 850..1089 | 99 | | Plus |
BO08866.pep Sequence
Translation from 16 to 1105
> BO08866.pep
MSEEAASTSSFGFKKRNLKKGAGIRRKKETSSDESAKSSDEETKGKASAL
VRAENRRKRTNPNFQSTKTMSKAKRQAGGVGDDGSSSASDDDKLGIAYKS
KREALPSGPQDQGATSINEMDTELDRDAQAIHARALKINEELEGKADDKI
YRGINNYAQYYKKQDTAAGNASSGMVRSGPIRAPAHLRATVRWDYQPDIC
KDYKETGYCGFGDSCKFLHDRSDYKAGWQLEMDHENQRTGDVDSDGDDTK
YEIHSDEETLPFKCHICRQSFVNPVVTKCKHYFCEKCALAQYKKSQRCII
CSQQTNGIFNPAKELIARLKTNPMENSDSDEEEEFGKKEDKAEAGEEAQE
ISSDDSDASFLDH
BO08866.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdlc-PA | 357 | CG4973-PA | 1..357 | 1..357 | 1880 | 100 | Plus |