Clone Sequence Records
BO08868.3prime Sequence
942 bp (846 high quality bases) assembled on 2006-01-09
> BO08868.3prime
ATGGTCTAGAAAGCTTGCACGCTCGTAGTAGACGCGGTAGTACAGCGTCT
TATTGCGCCAGATGCTGTAGCTGTTGTCGAACTTCAGCAAATAGACGCCC
TCGCCCGGATAGGAGTGGGAGCCCACGTAGACCTCGTTGTAGCACTCCCG
TCGATAGATCGGTACGATAATGGAAATGGGTGCCTTGGGGGCAGCAGTCG
GGTTGTTAACTGCGCCGCGCTCCTGCGACAGCGAGCCGGACTCCAGGTCC
TCGGTGGTGGATAGGTAGTCCTCGTCCACGCAATCCTCGTCCTCGTCGGA
GTCGCTCACATGCACGGTCACCTCGTTGGTCACGGGCTTGGCCCACTCGA
AGTAGATGCCGAAGCCGATGTCGTAGCTGTCCGTGGCGAACTCCCAGAAG
ATGCACTTGCCGTTCATGTTGGTGGGCACACGGACCGTCACCGTGTCGCC
GTGTCCAATGGTGATGACGCCGTCCCCATCGCCGGCGGACACCTCAGTCT
TAAACTGCTCGATGTCGGGACGAGTCCAGATCTTGGCCGGGCAGATCATA
ACGTAGTCGTCGTACTCTTCCTCGCCGTGCTGTTCCTGCCCAACGCCCTC
CAACGTCTGCTCTACATGCCCGTCTTGCTGCTCGGCCAGCTGCTGGTGCT
GCTGTGTCTCGACCTCACCGAGCTTCAGTCCCTCCATGGCGTTGGGCAAG
TCGGTTGAGCTGTTGTTGTTATTGCCAGGGACGTGTTCTGCTTCCTGGTG
TCCCTTGTCCTCCGTGTTCTGATTCTGATTCTGGTTCTGGTTCTGCAGAT
GAAGCTGTTGCATGTACTGGTGATAGTGCTCCCGCTGCAGCTGGTGGATA
AGCACGGCCTGCTGTTCGGGGTTTCCGGGGAACTGCTTCTCAGCGTACAG
CTTAAACTGCTGGTAAGTCTGCTTGTTGAGTGCGTCCTGCAG
BO08868.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14232-PA | 1443 | CG14232-RA | 517..1440 | 942..19 | 4620 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:23:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14232-RB | 1874 | CG14232-RB | 682..1605 | 942..19 | 4620 | 100 | Minus |
CG14232-RA | 1905 | CG14232-RA | 652..1575 | 942..19 | 4620 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:23:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19702731..19703199 | 434..902 | 2345 | 100 | Plus |
X | 23542271 | X | 19702257..19702674 | 19..436 | 2090 | 100 | Plus |
X | 23542271 | X | 19703403..19703444 | 901..942 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 07:23:43 has no hits.
BO08868.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:41 Download gff for
BO08868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14232-PA | 517..1443 | 15..942 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:53:39 Download gff for
BO08868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14232-PA | 517..1443 | 15..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:14:01 Download gff for
BO08868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14232-RA | 652..1579 | 14..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:43:31 Download gff for
BO08868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14232-RA | 652..1579 | 14..942 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:43:31 Download gff for
BO08868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19702253..19702673 | 14..435 | 99 | <- | Plus |
X | 19702733..19703197 | 436..900 | 100 | <- | Plus |
X | 19703403..19703444 | 901..942 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:14:01 Download gff for
BO08868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19596286..19596706 | 14..435 | 99 | <- | Plus |
arm_X | 19596766..19597230 | 436..900 | 100 | <- | Plus |
arm_X | 19597436..19597477 | 901..942 | 100 | | Plus |
BO08868.5prime Sequence
919 bp (845 high quality bases) assembled on 2006-01-09
> BO08868.5prime
GAAGTTATCAGTCGACATGGCGAGCGGGACAAGCGGCACAAGCAGCAGTG
AAACGGCCCAGTCGACGGACATGGCACCATCATCGGCCGAGAAGTGGGGC
TTCCCTTTGATTGAGCTCTACCGCCTGGCATTCACGTTCTACAAGCGGAA
CTCCGGCAAGGCCATCCACTTGTCGTACGAGGACAACCTCAAGCTGATCG
CCTTCAAGCAGCAGGCGGCGCTGGGCCCCTTCAACACGAGTCGCGCCCCG
GCGCTGGGCGTCCTGGACGTGATCGGACGCGACCGGCAGCAGCACTGGCA
GCTGCTCGGTGAGATAACGCGCGAGCAGGCGATGGAGGGGTTCGTCGACC
TGCTGGACACAATGTGCAGCGCCTTTCGGCCGTACATTGAGGCCGTGCGG
CAGGACCGCGACGAGACGCTGCGCAAGGAGCTGCGCCTCATGGAGGAGAA
GAAGGAGGCACGCGAGCGGCAGGAGAACGCCCAGCAGGAGCTGCTCGAGG
AGGGTTACAAGGAGGAGCTGCAGCGCCGCCAGCTGCAGGACGCACTCAAC
AAGCAGACTTACCAGCAGTTTAAGCTGTACGCTGAGAAGCAGTTCCCCGG
AAACCCCGAACAGCAGGCCGTGCTTATCCACCAGCTGCAGCGGGAGCACT
ATCACCAGTACATGCAACAGCTTCATCTGCAGAACCAGAACCAGAATCAG
AATCAGAACACGGAGGACAAGGGACACCAGGAAGCAGAACACGTCCCTGG
CAATAACAACAACAGCTCAACCGACTTGCCCAACGCCATGGAGGGACTGA
AGCTCGGTGAGGTCGAGACACAGCAGCACCAGCAGCTGGCCGAGCAGCAA
GACGGGCATGTAGAGCAGACGGTGGAAGGCGTTGGGCAGGAACAGCACGG
CGAGGAAGAGTACGACGAC
BO08868.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14232-PA | 1443 | CG14232-RA | 1..903 | 17..919 | 4465 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:38:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14232-RB | 1874 | CG14232-RB | 165..1068 | 16..919 | 4490 | 99.8 | Plus |
CG14232-RA | 1905 | CG14232-RA | 135..1038 | 16..919 | 4490 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:38:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19703403..19703830 | 574..147 | 2140 | 100 | Minus |
X | 23542271 | X | 19702853..19703199 | 919..573 | 1705 | 99.4 | Minus |
X | 23542271 | X | 19703888..19704019 | 147..16 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:38:57 has no hits.
BO08868.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:41 Download gff for
BO08868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14232-PA | 1..903 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:53:40 Download gff for
BO08868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14232-PA | 1..903 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:25:54 Download gff for
BO08868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14232-RA | 135..1038 | 16..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:23:10 Download gff for
BO08868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14232-RA | 135..1038 | 16..919 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 15:23:10 Download gff for
BO08868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19702853..19703197 | 575..919 | 99 | <- | Minus |
X | 19703403..19703830 | 147..574 | 100 | <- | Minus |
X | 19703889..19704019 | 16..146 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:25:54 Download gff for
BO08868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19596886..19597230 | 575..919 | 99 | <- | Minus |
arm_X | 19597436..19597863 | 147..574 | 100 | <- | Minus |
arm_X | 19597922..19598052 | 16..146 | 100 | | Minus |
BO08868.complete Sequence
1474 bp (1474 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631297
> BO08868.complete
GAAGTTATCAGTCGACATGGCGAGCGGGACAAGCGGCACAAGCAGCAGTG
AAACGGCCCAGTCGACGGACATGGCACCATCATCGGCCGAGAAGTGGGGC
TTCCCTTTGATTGAGCTCTACCGCCTGGCATTCACGTTCTACAAGCGGAA
CTCCGGCAAGGCCATCCACTTGTCGTACGAGGACAACCTCAAGCTGATCG
CCTTCAAGCAGCAGGCGGCGCTGGGCCCCTTCAACACGAGTCGCGCCCCG
GCGCTGGGCGTCCTGGACGTGATCGGACGCGACCGGCAGCAGCACTGGCA
GCTGCTCGGTGAGATAACGCGCGAGCAGGCGATGGAGGGGTTCGTCGACC
TGCTGGACACAATGTGCAGCGCCTTTCGGCCGTACATTGAGGCCGTGCGG
CAGGACCGCGACGAGACGCTGCGCAAGGAGCTGCGCCTCATGGAGGAGAA
GAAGGAGGCACGCGAGCGGCAGGAGAACGCCCAGCAGGAGCTGCTCGAGG
AGGGTTACAAGGAGGAGCTGCAGCGCCGCCAGCTGCAGGACGCACTCAAC
AAGCAGACTTACCAGCAGTTTAAGCTGTACGCTGAGAAGCAGTTCCCCGG
AAACCCCGAACAGCAGGCCGTGCTTATCCACCAGCTGCAGCGGGAGCACT
ATCACCAGTACATGCAACAGCTTCATCTGCAGAACCAGAACCAGAATCAG
AATCAGAACACGGAGGACAAGGGACACCAGGAAGCAGAACACGTCCCTGG
CAATAACAACAACAGCTCAACCGACTTGCCCAACGCCATGGAGGGACTGA
AGCTCGGTGAGGTCGAGACACAGCAGCACCAGCAGCTGGCCGAGCAGCAA
GACGGGCATGTAGAGCAGACGTTGGAGGGCGTTGGGCAGGAACAGCACGG
CGAGGAAGAGTACGACGACTACGTTATGATCTGCCCGGCCAAGATCTGGA
CTCGTCCCGACATCGAGCAGTTTAAGACTGAGGTGTCCGCCGGCGATGGG
GACGGCGTCATCACCATTGGACACGGCGACACGGTGACGGTCCGTGTGCC
CACCAACATGAACGGCAAGTGCATCTTCTGGGAGTTCGCCACGGACAGCT
ACGACATCGGCTTCGGCATCTACTTCGAGTGGGCCAAGCCCGTGACCAAC
GAGGTGACCGTGCATGTGAGCGACTCCGACGAGGACGAGGATTGCGTGGA
CGAGGACTACCTATCCACCACCGAGGACCTGGAGTCCGGCTCGCTGTCGC
AGGAGCGCGGCGCAGTTAACAACCCGACTGCTGCCCCCAAGGCACCCATT
TCCATTATCGTACCGATCTATCGACGGGAGTGCTACAACGAGGTCTACGT
GGGCTCCCACTCCTATCCGGGCGAGGGCGTCTATTTGCTGAAGTTCGACA
ACAGCTACAGCATCTGGCGCAATAAGACGCTGTACTACCGCGTCTACTAC
GAGCGTGCAAGCTTTCTAGACCAT
BO08868.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:20:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14232-RB | 1443 | CG14232-PB | 1..1440 | 17..1456 | 7200 | 100 | Plus |
CG14232-RA | 1443 | CG14232-PA | 1..1440 | 17..1456 | 7200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14232-RB | 1874 | CG14232-RB | 165..1605 | 16..1456 | 7205 | 100 | Plus |
CG14232-RA | 1905 | CG14232-RA | 135..1575 | 16..1456 | 7205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19702731..19703199 | 1041..573 | 2345 | 100 | Minus |
X | 23542271 | X | 19703403..19703830 | 574..147 | 2140 | 100 | Minus |
X | 23542271 | X | 19702257..19702674 | 1456..1039 | 2090 | 100 | Minus |
X | 23542271 | X | 19703888..19704019 | 147..16 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:20:14 has no hits.
BO08868.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:39 Download gff for
BO08868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14232-RA | 1..1443 | 17..1460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:50 Download gff for
BO08868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14232-RA | 127..1571 | 16..1461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:16 Download gff for
BO08868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14232-RA | 136..1575 | 17..1458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:39 Download gff for
BO08868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14232-RA | 127..1571 | 16..1461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:03 Download gff for
BO08868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14232-RA | 136..1575 | 17..1458 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:03 Download gff for
BO08868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19702255..19702673 | 1040..1458 | 99 | <- | Minus |
X | 19702733..19703197 | 575..1039 | 100 | <- | Minus |
X | 19703403..19703830 | 147..574 | 100 | <- | Minus |
X | 19703889..19704018 | 17..146 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:16 Download gff for
BO08868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19596288..19596706 | 1040..1458 | 99 | <- | Minus |
arm_X | 19596766..19597230 | 575..1039 | 100 | <- | Minus |
arm_X | 19597436..19597863 | 147..574 | 100 | <- | Minus |
arm_X | 19597922..19598051 | 17..146 | 100 | | Minus |
BO08868.pep Sequence
Translation from 16 to 1474
> BO08868.pep
MASGTSGTSSSETAQSTDMAPSSAEKWGFPLIELYRLAFTFYKRNSGKAI
HLSYEDNLKLIAFKQQAALGPFNTSRAPALGVLDVIGRDRQQHWQLLGEI
TREQAMEGFVDLLDTMCSAFRPYIEAVRQDRDETLRKELRLMEEKKEARE
RQENAQQELLEEGYKEELQRRQLQDALNKQTYQQFKLYAEKQFPGNPEQQ
AVLIHQLQREHYHQYMQQLHLQNQNQNQNQNTEDKGHQEAEHVPGNNNNS
STDLPNAMEGLKLGEVETQQHQQLAEQQDGHVEQTLEGVGQEQHGEEEYD
DYVMICPAKIWTRPDIEQFKTEVSAGDGDGVITIGHGDTVTVRVPTNMNG
KCIFWEFATDSYDIGFGIYFEWAKPVTNEVTVHVSDSDEDEDCVDEDYLS
TTEDLESGSLSQERGAVNNPTAAPKAPISIIVPIYRRECYNEVYVGSHSY
PGEGVYLLKFDNSYSIWRNKTLYYRVYYERASFLDH
BO08868.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14232-PB | 480 | CG14232-PB | 1..480 | 1..480 | 2541 | 100 | Plus |
CG14232-PA | 480 | CG14232-PA | 1..480 | 1..480 | 2541 | 100 | Plus |