Clone BO08868 Report

Search the DGRC for BO08868

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:88
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG14232-RA
Protein status:BO08868.pep: validated full length
Sequenced Size:1474

Clone Sequence Records

BO08868.3prime Sequence

942 bp (846 high quality bases) assembled on 2006-01-09

> BO08868.3prime
ATGGTCTAGAAAGCTTGCACGCTCGTAGTAGACGCGGTAGTACAGCGTCT
TATTGCGCCAGATGCTGTAGCTGTTGTCGAACTTCAGCAAATAGACGCCC
TCGCCCGGATAGGAGTGGGAGCCCACGTAGACCTCGTTGTAGCACTCCCG
TCGATAGATCGGTACGATAATGGAAATGGGTGCCTTGGGGGCAGCAGTCG
GGTTGTTAACTGCGCCGCGCTCCTGCGACAGCGAGCCGGACTCCAGGTCC
TCGGTGGTGGATAGGTAGTCCTCGTCCACGCAATCCTCGTCCTCGTCGGA
GTCGCTCACATGCACGGTCACCTCGTTGGTCACGGGCTTGGCCCACTCGA
AGTAGATGCCGAAGCCGATGTCGTAGCTGTCCGTGGCGAACTCCCAGAAG
ATGCACTTGCCGTTCATGTTGGTGGGCACACGGACCGTCACCGTGTCGCC
GTGTCCAATGGTGATGACGCCGTCCCCATCGCCGGCGGACACCTCAGTCT
TAAACTGCTCGATGTCGGGACGAGTCCAGATCTTGGCCGGGCAGATCATA
ACGTAGTCGTCGTACTCTTCCTCGCCGTGCTGTTCCTGCCCAACGCCCTC
CAACGTCTGCTCTACATGCCCGTCTTGCTGCTCGGCCAGCTGCTGGTGCT
GCTGTGTCTCGACCTCACCGAGCTTCAGTCCCTCCATGGCGTTGGGCAAG
TCGGTTGAGCTGTTGTTGTTATTGCCAGGGACGTGTTCTGCTTCCTGGTG
TCCCTTGTCCTCCGTGTTCTGATTCTGATTCTGGTTCTGGTTCTGCAGAT
GAAGCTGTTGCATGTACTGGTGATAGTGCTCCCGCTGCAGCTGGTGGATA
AGCACGGCCTGCTGTTCGGGGTTTCCGGGGAACTGCTTCTCAGCGTACAG
CTTAAACTGCTGGTAAGTCTGCTTGTTGAGTGCGTCCTGCAG

BO08868.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG14232-PA 1443 CG14232-RA 517..1440 942..19 4620 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:23:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG14232-RB 1874 CG14232-RB 682..1605 942..19 4620 100 Minus
CG14232-RA 1905 CG14232-RA 652..1575 942..19 4620 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:23:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19702731..19703199 434..902 2345 100 Plus
X 23542271 X 19702257..19702674 19..436 2090 100 Plus
X 23542271 X 19703403..19703444 901..942 210 100 Plus
Blast to na_te.dros performed on 2015-02-01 07:23:43 has no hits.

BO08868.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:41 Download gff for BO08868.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14232-PA 517..1443 15..942 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:53:39 Download gff for BO08868.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14232-PA 517..1443 15..942 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:14:01 Download gff for BO08868.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14232-RA 652..1579 14..942 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:43:31 Download gff for BO08868.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14232-RA 652..1579 14..942 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:43:31 Download gff for BO08868.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19702253..19702673 14..435 99 <- Plus
X 19702733..19703197 436..900 100 <- Plus
X 19703403..19703444 901..942 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:14:01 Download gff for BO08868.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19596286..19596706 14..435 99 <- Plus
arm_X 19596766..19597230 436..900 100 <- Plus
arm_X 19597436..19597477 901..942 100   Plus

BO08868.5prime Sequence

919 bp (845 high quality bases) assembled on 2006-01-09

> BO08868.5prime
GAAGTTATCAGTCGACATGGCGAGCGGGACAAGCGGCACAAGCAGCAGTG
AAACGGCCCAGTCGACGGACATGGCACCATCATCGGCCGAGAAGTGGGGC
TTCCCTTTGATTGAGCTCTACCGCCTGGCATTCACGTTCTACAAGCGGAA
CTCCGGCAAGGCCATCCACTTGTCGTACGAGGACAACCTCAAGCTGATCG
CCTTCAAGCAGCAGGCGGCGCTGGGCCCCTTCAACACGAGTCGCGCCCCG
GCGCTGGGCGTCCTGGACGTGATCGGACGCGACCGGCAGCAGCACTGGCA
GCTGCTCGGTGAGATAACGCGCGAGCAGGCGATGGAGGGGTTCGTCGACC
TGCTGGACACAATGTGCAGCGCCTTTCGGCCGTACATTGAGGCCGTGCGG
CAGGACCGCGACGAGACGCTGCGCAAGGAGCTGCGCCTCATGGAGGAGAA
GAAGGAGGCACGCGAGCGGCAGGAGAACGCCCAGCAGGAGCTGCTCGAGG
AGGGTTACAAGGAGGAGCTGCAGCGCCGCCAGCTGCAGGACGCACTCAAC
AAGCAGACTTACCAGCAGTTTAAGCTGTACGCTGAGAAGCAGTTCCCCGG
AAACCCCGAACAGCAGGCCGTGCTTATCCACCAGCTGCAGCGGGAGCACT
ATCACCAGTACATGCAACAGCTTCATCTGCAGAACCAGAACCAGAATCAG
AATCAGAACACGGAGGACAAGGGACACCAGGAAGCAGAACACGTCCCTGG
CAATAACAACAACAGCTCAACCGACTTGCCCAACGCCATGGAGGGACTGA
AGCTCGGTGAGGTCGAGACACAGCAGCACCAGCAGCTGGCCGAGCAGCAA
GACGGGCATGTAGAGCAGACGGTGGAAGGCGTTGGGCAGGAACAGCACGG
CGAGGAAGAGTACGACGAC

BO08868.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG14232-PA 1443 CG14232-RA 1..903 17..919 4465 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:38:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG14232-RB 1874 CG14232-RB 165..1068 16..919 4490 99.8 Plus
CG14232-RA 1905 CG14232-RA 135..1038 16..919 4490 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:38:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19703403..19703830 574..147 2140 100 Minus
X 23542271 X 19702853..19703199 919..573 1705 99.4 Minus
X 23542271 X 19703888..19704019 147..16 660 100 Minus
Blast to na_te.dros performed on 2015-02-11 12:38:57 has no hits.

BO08868.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:41 Download gff for BO08868.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14232-PA 1..903 17..919 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:53:40 Download gff for BO08868.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14232-PA 1..903 17..919 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:25:54 Download gff for BO08868.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14232-RA 135..1038 16..919 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:23:10 Download gff for BO08868.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14232-RA 135..1038 16..919 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 15:23:10 Download gff for BO08868.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19702853..19703197 575..919 99 <- Minus
X 19703403..19703830 147..574 100 <- Minus
X 19703889..19704019 16..146 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:25:54 Download gff for BO08868.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19596886..19597230 575..919 99 <- Minus
arm_X 19597436..19597863 147..574 100 <- Minus
arm_X 19597922..19598052 16..146 100   Minus

BO08868.complete Sequence

1474 bp (1474 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ631297

> BO08868.complete
GAAGTTATCAGTCGACATGGCGAGCGGGACAAGCGGCACAAGCAGCAGTG
AAACGGCCCAGTCGACGGACATGGCACCATCATCGGCCGAGAAGTGGGGC
TTCCCTTTGATTGAGCTCTACCGCCTGGCATTCACGTTCTACAAGCGGAA
CTCCGGCAAGGCCATCCACTTGTCGTACGAGGACAACCTCAAGCTGATCG
CCTTCAAGCAGCAGGCGGCGCTGGGCCCCTTCAACACGAGTCGCGCCCCG
GCGCTGGGCGTCCTGGACGTGATCGGACGCGACCGGCAGCAGCACTGGCA
GCTGCTCGGTGAGATAACGCGCGAGCAGGCGATGGAGGGGTTCGTCGACC
TGCTGGACACAATGTGCAGCGCCTTTCGGCCGTACATTGAGGCCGTGCGG
CAGGACCGCGACGAGACGCTGCGCAAGGAGCTGCGCCTCATGGAGGAGAA
GAAGGAGGCACGCGAGCGGCAGGAGAACGCCCAGCAGGAGCTGCTCGAGG
AGGGTTACAAGGAGGAGCTGCAGCGCCGCCAGCTGCAGGACGCACTCAAC
AAGCAGACTTACCAGCAGTTTAAGCTGTACGCTGAGAAGCAGTTCCCCGG
AAACCCCGAACAGCAGGCCGTGCTTATCCACCAGCTGCAGCGGGAGCACT
ATCACCAGTACATGCAACAGCTTCATCTGCAGAACCAGAACCAGAATCAG
AATCAGAACACGGAGGACAAGGGACACCAGGAAGCAGAACACGTCCCTGG
CAATAACAACAACAGCTCAACCGACTTGCCCAACGCCATGGAGGGACTGA
AGCTCGGTGAGGTCGAGACACAGCAGCACCAGCAGCTGGCCGAGCAGCAA
GACGGGCATGTAGAGCAGACGTTGGAGGGCGTTGGGCAGGAACAGCACGG
CGAGGAAGAGTACGACGACTACGTTATGATCTGCCCGGCCAAGATCTGGA
CTCGTCCCGACATCGAGCAGTTTAAGACTGAGGTGTCCGCCGGCGATGGG
GACGGCGTCATCACCATTGGACACGGCGACACGGTGACGGTCCGTGTGCC
CACCAACATGAACGGCAAGTGCATCTTCTGGGAGTTCGCCACGGACAGCT
ACGACATCGGCTTCGGCATCTACTTCGAGTGGGCCAAGCCCGTGACCAAC
GAGGTGACCGTGCATGTGAGCGACTCCGACGAGGACGAGGATTGCGTGGA
CGAGGACTACCTATCCACCACCGAGGACCTGGAGTCCGGCTCGCTGTCGC
AGGAGCGCGGCGCAGTTAACAACCCGACTGCTGCCCCCAAGGCACCCATT
TCCATTATCGTACCGATCTATCGACGGGAGTGCTACAACGAGGTCTACGT
GGGCTCCCACTCCTATCCGGGCGAGGGCGTCTATTTGCTGAAGTTCGACA
ACAGCTACAGCATCTGGCGCAATAAGACGCTGTACTACCGCGTCTACTAC
GAGCGTGCAAGCTTTCTAGACCAT

BO08868.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:20:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG14232-RB 1443 CG14232-PB 1..1440 17..1456 7200 100 Plus
CG14232-RA 1443 CG14232-PA 1..1440 17..1456 7200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG14232-RB 1874 CG14232-RB 165..1605 16..1456 7205 100 Plus
CG14232-RA 1905 CG14232-RA 135..1575 16..1456 7205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19702731..19703199 1041..573 2345 100 Minus
X 23542271 X 19703403..19703830 574..147 2140 100 Minus
X 23542271 X 19702257..19702674 1456..1039 2090 100 Minus
X 23542271 X 19703888..19704019 147..16 660 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:20:14 has no hits.

BO08868.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:39 Download gff for BO08868.complete
Subject Subject Range Query Range Percent Splice Strand
CG14232-RA 1..1443 17..1460 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:50 Download gff for BO08868.complete
Subject Subject Range Query Range Percent Splice Strand
CG14232-RA 127..1571 16..1461 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:16 Download gff for BO08868.complete
Subject Subject Range Query Range Percent Splice Strand
CG14232-RA 136..1575 17..1458 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:39 Download gff for BO08868.complete
Subject Subject Range Query Range Percent Splice Strand
CG14232-RA 127..1571 16..1461 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:03 Download gff for BO08868.complete
Subject Subject Range Query Range Percent Splice Strand
CG14232-RA 136..1575 17..1458 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:03 Download gff for BO08868.complete
Subject Subject Range Query Range Percent Splice Strand
X 19702255..19702673 1040..1458 99 <- Minus
X 19702733..19703197 575..1039 100 <- Minus
X 19703403..19703830 147..574 100 <- Minus
X 19703889..19704018 17..146 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:16 Download gff for BO08868.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19596288..19596706 1040..1458 99 <- Minus
arm_X 19596766..19597230 575..1039 100 <- Minus
arm_X 19597436..19597863 147..574 100 <- Minus
arm_X 19597922..19598051 17..146 100   Minus

BO08868.pep Sequence

Translation from 16 to 1474

> BO08868.pep
MASGTSGTSSSETAQSTDMAPSSAEKWGFPLIELYRLAFTFYKRNSGKAI
HLSYEDNLKLIAFKQQAALGPFNTSRAPALGVLDVIGRDRQQHWQLLGEI
TREQAMEGFVDLLDTMCSAFRPYIEAVRQDRDETLRKELRLMEEKKEARE
RQENAQQELLEEGYKEELQRRQLQDALNKQTYQQFKLYAEKQFPGNPEQQ
AVLIHQLQREHYHQYMQQLHLQNQNQNQNQNTEDKGHQEAEHVPGNNNNS
STDLPNAMEGLKLGEVETQQHQQLAEQQDGHVEQTLEGVGQEQHGEEEYD
DYVMICPAKIWTRPDIEQFKTEVSAGDGDGVITIGHGDTVTVRVPTNMNG
KCIFWEFATDSYDIGFGIYFEWAKPVTNEVTVHVSDSDEDEDCVDEDYLS
TTEDLESGSLSQERGAVNNPTAAPKAPISIIVPIYRRECYNEVYVGSHSY
PGEGVYLLKFDNSYSIWRNKTLYYRVYYERASFLDH

BO08868.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG14232-PB 480 CG14232-PB 1..480 1..480 2541 100 Plus
CG14232-PA 480 CG14232-PA 1..480 1..480 2541 100 Plus