Clone Sequence Records
BO08873.3prime Sequence
920 bp (839 high quality bases) assembled on 2006-01-09
> BO08873.3prime
ATGGTCTAGAAAGCTTGCATTTGTGCTATTGTCCAGGGCTTCGGTCTTGA
TGGGCACCAGCGAGGGCGGTATGTTCAGTGTCTTTCCCGGGCAGGCGGCT
TCGTATTGGTGCTTCAGGCTCTCCATTTCGTAGACGCAGGTGGATAGGGC
GGTGCGAAGCTCGCAGAGCAATACCATATCGGAACGAAGCTCGTTGAAGG
AGGTGCAAATGTCCTCCGTGGGCGGCGGAGCGGGATCAACTTTAAACTCC
TGGATTGCCTGCTCGAGGGCTTTCACTTTGCGCTGGCCGATATTCGCCGG
CAGCTTCATCCTCTGCGAGCGCAGAGAAACCCCGGAACCGCGCAGGTCGG
CGAACTTGATGCCGCTGCTACCGATCTCTATGGCATTAACCACCGAGTCC
ACCCTGGAGGGTCGCGGCTGCTGATGTACCTTCTTTTTGTGCAGCTTCTT
CTCGTACTTTCGCGTACTCGGCGTATTCGATGCGTGCTCATTCTGCTGAT
CCGCTTGCGAAATAAGCTTCTGCAAGTCTTGTGTCTTGCGCTCGCGTTCC
TTTTTGCGCGCCTCGATTTTCTTCATCTCGTTGATAAGCATATTCTCCTC
CTCCACCTGTTGTGTCGTGCGTTTGAACAGCTTCTCCAGCTGCTCCTTGC
GGCGCCGTTCGTGCTCGACGTCATACACAAATACTTTCTTCTCACTCGTC
TGATTCTTGGCCTTGGCGAGCAGAGCGACCACCTCATAGTAGCGTTCTTT
GAGCTCCTCCACAGTTTTGGTTCCATGCTGCTGACGGTTCCAACGATCTG
CCATCACAATGAAGCGAAGATCGAACCTTCTGGCCAGGTCGAATAGGTGA
TCGGTCTGCACCTTGCTCCAGTTGTTGATGTTGTTCCTTAAGTGGGCATT
GTACTCCGTCATCGTGTACG
BO08873.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11132-PA | 1302 | DMAP1-RA | 398..1299 | 920..19 | 4510 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:30:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DMAP1-RA | 1584 | CG11132-RA | 533..1434 | 920..19 | 4510 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:30:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20644777..20645368 | 828..237 | 2960 | 100 | Minus |
2R | 25286936 | 2R | 20645427..20645582 | 237..82 | 780 | 100 | Minus |
2R | 25286936 | 2R | 20644625..20644720 | 920..825 | 480 | 100 | Minus |
2R | 25286936 | 2R | 20645651..20645715 | 83..19 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:30:03 has no hits.
BO08873.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:46 Download gff for
BO08873.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DMAP1-PA | 398..1302 | 15..920 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:53:47 Download gff for
BO08873.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11132-PA | 398..1302 | 15..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:13:11 Download gff for
BO08873.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DMAP1-RA | 533..1439 | 11..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:11:07 Download gff for
BO08873.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DMAP1-RA | 533..1439 | 11..920 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:11:07 Download gff for
BO08873.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20644625..20644718 | 827..920 | 100 | -> | Minus |
2R | 20644779..20645368 | 237..826 | 100 | -> | Minus |
2R | 20645428..20645582 | 82..236 | 100 | -> | Minus |
2R | 20645653..20645720 | 11..81 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:13:11 Download gff for
BO08873.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16532130..16532223 | 827..920 | 100 | -> | Minus |
arm_2R | 16532284..16532873 | 237..826 | 100 | -> | Minus |
arm_2R | 16532933..16533087 | 82..236 | 100 | -> | Minus |
arm_2R | 16533158..16533225 | 11..81 | 94 | | Minus |
BO08873.5prime Sequence
911 bp (761 high quality bases) assembled on 2006-01-09
> BO08873.5prime
GAAGTTATCAGTCGACATGTCGGCCGATGTGCGTGATATTCTGGACATGG
AGCGTGCCAACACGCCCGAGGTGACGCGGGATTCGTTTCTGGCCACCAAG
AAGCGCAACTTTGAGCGGACCAAGACTGCGTCCCGGCGTCCGGAGGGCAT
GCATAGGGAGGTGTTTGCCCTGCTCTACACAGACAAGAAAGATGCTCCGC
CTCTCCTGCCCACGGATACCGCTCTGGGAATCGGAGCGGGATACAAAGAG
ACGAAGGCCCGCCTGGGCATGAAGAAGGTGCGCAAGTGGGAGTGGGCGCC
CTTTTCGAATCCGGCACGTAACGATTCGGCGGTTTTTCACCACTGGAAAC
GAGTCACCGACAATTCCACCGACTATCCGTTCGCCAAGTTCAACAAGCAA
CTGGAGGTGCCCTCGTACACGATGACGGAGTACAATGCCCACTTAAGGAA
CAACATCAACAACTGGAGCAAGGTGCAGACCGATCACCTATTCGACCTGG
CCAGAAGGTTCGATCTTCGCTTCATTGTGATGGCAGATCGTTGGAACCGT
CAGCAGCATGGAACCAAAACTGTGGAGGAGCTCAAAGAACGCTACTATGA
GGTGGTCGCTCTGCTCGCCAAGGCCAAGAATCAGACGAGTGAGAAGAAAG
TATTTGTGTATGACGTCGAGCACGAACGGCGCCGCAAGGAGCAGCTGGAG
AAGCTGTTCAAACGCACGACACAACAGGTGGAGGAGGAGAATATGCTTAT
CAACGAGATGAAGAAAATCGAGGCGCGCAAAAAGGAACGCGAGCGCAAGA
CACAAGACTTGCAGAAGCTTATTTCGCAAGCGGATCAGCAGAATGAGCAC
GCATCGAATACGCCGAGTACGCGAAAGTACGAGAAGAAGCTGCACAAAAA
GAAGGTACATC
BO08873.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11132-PA | 1302 | DMAP1-RA | 1..895 | 17..911 | 4475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:10:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DMAP1-RA | 1584 | CG11132-RA | 135..1030 | 16..911 | 4480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:10:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20644777..20645182 | 506..911 | 2030 | 100 | Plus |
2R | 25286936 | 2R | 20644328..20644720 | 117..509 | 1965 | 100 | Plus |
2R | 25286936 | 2R | 20644170..20644272 | 16..118 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:10:42 has no hits.
BO08873.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:47 Download gff for
BO08873.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DMAP1-PA | 1..895 | 17..911 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:53:48 Download gff for
BO08873.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11132-PA | 1..895 | 17..911 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:28:27 Download gff for
BO08873.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DMAP1-RA | 135..1030 | 16..911 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:31:52 Download gff for
BO08873.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DMAP1-RA | 135..1030 | 16..911 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:31:52 Download gff for
BO08873.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20644779..20645182 | 508..911 | 100 | | Plus |
2R | 20644170..20644271 | 16..117 | 100 | -> | Plus |
2R | 20644329..20644718 | 118..507 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:28:27 Download gff for
BO08873.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16531675..16531776 | 16..117 | 100 | -> | Plus |
arm_2R | 16531834..16532223 | 118..507 | 100 | -> | Plus |
arm_2R | 16532284..16532687 | 508..911 | 100 | | Plus |
BO08873.complete Sequence
1333 bp (1333 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631298
> BO08873.complete
GAAGTTATCAGTCGACATGTCGGCCGATGTGCGTGATATTCTGGACATGG
AGCGTGCCAACACGCCCGAGGTGACGCGGGATTCGTTTCTGGCCACCAAG
AAGCGCAACTTTGAGCGGACCAAGACTGCGTCCCGGCGTCCGGAGGGCAT
GCATAGGGAGGTGTTTGCCCTGCTCTACACAGACAAGAAAGATGCTCCGC
CTCTCCTGCCCACGGATACCGCTCTGGGAATCGGAGCGGGATACAAAGAG
ACGAAGGCCCGCCTGGGCATGAAGAAGGTGCGCAAGTGGGAGTGGGCGCC
CTTTTCGAATCCGGCACGTAACGATTCGGCGGTTTTTCACCACTGGAAAC
GAGTCACCGACAATTCCACCGACTATCCGTTCGCCAAGTTCAACAAGCAA
CTGGAGGTGCCCTCGTACACGATGACGGAGTACAATGCCCACTTAAGGAA
CAACATCAACAACTGGAGCAAGGTGCAGACCGATCACCTATTCGACCTGG
CCAGAAGGTTCGATCTTCGCTTCATTGTGATGGCAGATCGTTGGAACCGT
CAGCAGCATGGAACCAAAACTGTGGAGGAGCTCAAAGAACGCTACTATGA
GGTGGTCGCTCTGCTCGCCAAGGCCAAGAATCAGACGAGTGAGAAGAAAG
TATTTGTGTATGACGTCGAGCACGAACGGCGCCGCAAGGAGCAGCTGGAG
AAGCTGTTCAAACGCACGACACAACAGGTGGAGGAGGAGAATATGCTTAT
CAACGAGATGAAGAAAATCGAGGCGCGCAAAAAGGAACGCGAGCGCAAGA
CACAAGACTTGCAGAAGCTTATTTCGCAAGCGGATCAGCAGAATGAGCAC
GCATCGAATACGCCGAGTACGCGAAAGTACGAGAAGAAGCTGCACAAAAA
GAAGGTACATCAGCAGCCGCGACCCTCCAGGGTGGACTCGGTGGTTAATG
CCATAGAGATCGGTAGCAGCGGCATCAAGTTCGCCGACCTGCGCGGTTCC
GGGGTTTCTCTGCGCTCGCAGAGGATGAAGCTGCCGGCGAATATCGGCCA
GCGCAAAGTGAAAGCCCTCGAGCAGGCAATCCAGGAGTTTAAAGTTGATC
CCGCTCCGCCGCCCACGGAGGACATTTGCACCTCCTTCAACGAGCTTCGT
TCCGATATGGTATTGCTCTGCGAGCTTCGCACCGCCCTATCCACCTGCGT
CTACGAAATGGAGAGCCTGAAGCACCAATACGAAGCCGCCTGCCCGGGAA
AGACACTGAACATACCGCCCTCGCTGGTGCCCATCAAGACCGAAGCCCTG
GACAATAGCACAAATGCAAGCTTTCTAGACCAT
BO08873.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:07:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DMAP1-RA | 1302 | CG11132-PA | 1..1299 | 17..1315 | 6495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DMAP1-RA | 1584 | CG11132-RA | 135..1434 | 16..1315 | 6500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20644777..20645368 | 506..1097 | 2960 | 100 | Plus |
2R | 25286936 | 2R | 20644328..20644720 | 117..509 | 1965 | 100 | Plus |
2R | 25286936 | 2R | 20645427..20645582 | 1097..1252 | 780 | 100 | Plus |
2R | 25286936 | 2R | 20644170..20644272 | 16..118 | 515 | 100 | Plus |
2R | 25286936 | 2R | 20645651..20645715 | 1251..1315 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:07:35 has no hits.
BO08873.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:40 Download gff for
BO08873.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DMAP1-RA | 1..1302 | 17..1319 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:51 Download gff for
BO08873.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DMAP1-RA | 133..1437 | 16..1323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:25 Download gff for
BO08873.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DMAP1-RA | 136..1434 | 17..1317 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:40 Download gff for
BO08873.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DMAP1-RA | 133..1437 | 16..1323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:29 Download gff for
BO08873.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DMAP1-RA | 136..1434 | 17..1317 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:29 Download gff for
BO08873.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20644171..20644271 | 17..117 | 100 | -> | Plus |
2R | 20644329..20644718 | 118..507 | 100 | -> | Plus |
2R | 20644779..20645368 | 508..1097 | 100 | -> | Plus |
2R | 20645428..20645582 | 1098..1252 | 100 | -> | Plus |
2R | 20645653..20645715 | 1253..1317 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:25 Download gff for
BO08873.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16531676..16531776 | 17..117 | 100 | -> | Plus |
arm_2R | 16531834..16532223 | 118..507 | 100 | -> | Plus |
arm_2R | 16532284..16532873 | 508..1097 | 100 | -> | Plus |
arm_2R | 16532933..16533087 | 1098..1252 | 100 | -> | Plus |
arm_2R | 16533158..16533220 | 1253..1317 | 96 | | Plus |
BO08873.pep Sequence
Translation from 16 to 1333
> BO08873.pep
MSADVRDILDMERANTPEVTRDSFLATKKRNFERTKTASRRPEGMHREVF
ALLYTDKKDAPPLLPTDTALGIGAGYKETKARLGMKKVRKWEWAPFSNPA
RNDSAVFHHWKRVTDNSTDYPFAKFNKQLEVPSYTMTEYNAHLRNNINNW
SKVQTDHLFDLARRFDLRFIVMADRWNRQQHGTKTVEELKERYYEVVALL
AKAKNQTSEKKVFVYDVEHERRRKEQLEKLFKRTTQQVEEENMLINEMKK
IEARKKERERKTQDLQKLISQADQQNEHASNTPSTRKYEKKLHKKKVHQQ
PRPSRVDSVVNAIEIGSSGIKFADLRGSGVSLRSQRMKLPANIGQRKVKA
LEQAIQEFKVDPAPPPTEDICTSFNELRSDMVLLCELRTALSTCVYEMES
LKHQYEAACPGKTLNIPPSLVPIKTEALDNSTNASFLDH
BO08873.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DMAP1-PA | 433 | CG11132-PA | 1..433 | 1..433 | 2248 | 100 | Plus |