Clone BO08873 Report

Search the DGRC for BO08873

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:88
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptDMAP1-RA
Protein status:BO08873.pep: validated full length
Sequenced Size:1333

Clone Sequence Records

BO08873.3prime Sequence

920 bp (839 high quality bases) assembled on 2006-01-09

> BO08873.3prime
ATGGTCTAGAAAGCTTGCATTTGTGCTATTGTCCAGGGCTTCGGTCTTGA
TGGGCACCAGCGAGGGCGGTATGTTCAGTGTCTTTCCCGGGCAGGCGGCT
TCGTATTGGTGCTTCAGGCTCTCCATTTCGTAGACGCAGGTGGATAGGGC
GGTGCGAAGCTCGCAGAGCAATACCATATCGGAACGAAGCTCGTTGAAGG
AGGTGCAAATGTCCTCCGTGGGCGGCGGAGCGGGATCAACTTTAAACTCC
TGGATTGCCTGCTCGAGGGCTTTCACTTTGCGCTGGCCGATATTCGCCGG
CAGCTTCATCCTCTGCGAGCGCAGAGAAACCCCGGAACCGCGCAGGTCGG
CGAACTTGATGCCGCTGCTACCGATCTCTATGGCATTAACCACCGAGTCC
ACCCTGGAGGGTCGCGGCTGCTGATGTACCTTCTTTTTGTGCAGCTTCTT
CTCGTACTTTCGCGTACTCGGCGTATTCGATGCGTGCTCATTCTGCTGAT
CCGCTTGCGAAATAAGCTTCTGCAAGTCTTGTGTCTTGCGCTCGCGTTCC
TTTTTGCGCGCCTCGATTTTCTTCATCTCGTTGATAAGCATATTCTCCTC
CTCCACCTGTTGTGTCGTGCGTTTGAACAGCTTCTCCAGCTGCTCCTTGC
GGCGCCGTTCGTGCTCGACGTCATACACAAATACTTTCTTCTCACTCGTC
TGATTCTTGGCCTTGGCGAGCAGAGCGACCACCTCATAGTAGCGTTCTTT
GAGCTCCTCCACAGTTTTGGTTCCATGCTGCTGACGGTTCCAACGATCTG
CCATCACAATGAAGCGAAGATCGAACCTTCTGGCCAGGTCGAATAGGTGA
TCGGTCTGCACCTTGCTCCAGTTGTTGATGTTGTTCCTTAAGTGGGCATT
GTACTCCGTCATCGTGTACG

BO08873.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG11132-PA 1302 DMAP1-RA 398..1299 920..19 4510 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:30:05
Subject Length Description Subject Range Query Range Score Percent Strand
DMAP1-RA 1584 CG11132-RA 533..1434 920..19 4510 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:30:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20644777..20645368 828..237 2960 100 Minus
2R 25286936 2R 20645427..20645582 237..82 780 100 Minus
2R 25286936 2R 20644625..20644720 920..825 480 100 Minus
2R 25286936 2R 20645651..20645715 83..19 325 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:30:03 has no hits.

BO08873.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:46 Download gff for BO08873.3prime
Subject Subject Range Query Range Percent Splice Strand
DMAP1-PA 398..1302 15..920 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:53:47 Download gff for BO08873.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11132-PA 398..1302 15..920 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:13:11 Download gff for BO08873.3prime
Subject Subject Range Query Range Percent Splice Strand
DMAP1-RA 533..1439 11..920 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:11:07 Download gff for BO08873.3prime
Subject Subject Range Query Range Percent Splice Strand
DMAP1-RA 533..1439 11..920 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:11:07 Download gff for BO08873.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20644625..20644718 827..920 100 -> Minus
2R 20644779..20645368 237..826 100 -> Minus
2R 20645428..20645582 82..236 100 -> Minus
2R 20645653..20645720 11..81 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:13:11 Download gff for BO08873.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16532130..16532223 827..920 100 -> Minus
arm_2R 16532284..16532873 237..826 100 -> Minus
arm_2R 16532933..16533087 82..236 100 -> Minus
arm_2R 16533158..16533225 11..81 94   Minus

BO08873.5prime Sequence

911 bp (761 high quality bases) assembled on 2006-01-09

> BO08873.5prime
GAAGTTATCAGTCGACATGTCGGCCGATGTGCGTGATATTCTGGACATGG
AGCGTGCCAACACGCCCGAGGTGACGCGGGATTCGTTTCTGGCCACCAAG
AAGCGCAACTTTGAGCGGACCAAGACTGCGTCCCGGCGTCCGGAGGGCAT
GCATAGGGAGGTGTTTGCCCTGCTCTACACAGACAAGAAAGATGCTCCGC
CTCTCCTGCCCACGGATACCGCTCTGGGAATCGGAGCGGGATACAAAGAG
ACGAAGGCCCGCCTGGGCATGAAGAAGGTGCGCAAGTGGGAGTGGGCGCC
CTTTTCGAATCCGGCACGTAACGATTCGGCGGTTTTTCACCACTGGAAAC
GAGTCACCGACAATTCCACCGACTATCCGTTCGCCAAGTTCAACAAGCAA
CTGGAGGTGCCCTCGTACACGATGACGGAGTACAATGCCCACTTAAGGAA
CAACATCAACAACTGGAGCAAGGTGCAGACCGATCACCTATTCGACCTGG
CCAGAAGGTTCGATCTTCGCTTCATTGTGATGGCAGATCGTTGGAACCGT
CAGCAGCATGGAACCAAAACTGTGGAGGAGCTCAAAGAACGCTACTATGA
GGTGGTCGCTCTGCTCGCCAAGGCCAAGAATCAGACGAGTGAGAAGAAAG
TATTTGTGTATGACGTCGAGCACGAACGGCGCCGCAAGGAGCAGCTGGAG
AAGCTGTTCAAACGCACGACACAACAGGTGGAGGAGGAGAATATGCTTAT
CAACGAGATGAAGAAAATCGAGGCGCGCAAAAAGGAACGCGAGCGCAAGA
CACAAGACTTGCAGAAGCTTATTTCGCAAGCGGATCAGCAGAATGAGCAC
GCATCGAATACGCCGAGTACGCGAAAGTACGAGAAGAAGCTGCACAAAAA
GAAGGTACATC

BO08873.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:30:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG11132-PA 1302 DMAP1-RA 1..895 17..911 4475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:10:44
Subject Length Description Subject Range Query Range Score Percent Strand
DMAP1-RA 1584 CG11132-RA 135..1030 16..911 4480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:10:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20644777..20645182 506..911 2030 100 Plus
2R 25286936 2R 20644328..20644720 117..509 1965 100 Plus
2R 25286936 2R 20644170..20644272 16..118 515 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:10:42 has no hits.

BO08873.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:47 Download gff for BO08873.5prime
Subject Subject Range Query Range Percent Splice Strand
DMAP1-PA 1..895 17..911 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:53:48 Download gff for BO08873.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11132-PA 1..895 17..911 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:28:27 Download gff for BO08873.5prime
Subject Subject Range Query Range Percent Splice Strand
DMAP1-RA 135..1030 16..911 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:31:52 Download gff for BO08873.5prime
Subject Subject Range Query Range Percent Splice Strand
DMAP1-RA 135..1030 16..911 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:31:52 Download gff for BO08873.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20644779..20645182 508..911 100   Plus
2R 20644170..20644271 16..117 100 -> Plus
2R 20644329..20644718 118..507 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:28:27 Download gff for BO08873.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16531675..16531776 16..117 100 -> Plus
arm_2R 16531834..16532223 118..507 100 -> Plus
arm_2R 16532284..16532687 508..911 100   Plus

BO08873.complete Sequence

1333 bp (1333 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ631298

> BO08873.complete
GAAGTTATCAGTCGACATGTCGGCCGATGTGCGTGATATTCTGGACATGG
AGCGTGCCAACACGCCCGAGGTGACGCGGGATTCGTTTCTGGCCACCAAG
AAGCGCAACTTTGAGCGGACCAAGACTGCGTCCCGGCGTCCGGAGGGCAT
GCATAGGGAGGTGTTTGCCCTGCTCTACACAGACAAGAAAGATGCTCCGC
CTCTCCTGCCCACGGATACCGCTCTGGGAATCGGAGCGGGATACAAAGAG
ACGAAGGCCCGCCTGGGCATGAAGAAGGTGCGCAAGTGGGAGTGGGCGCC
CTTTTCGAATCCGGCACGTAACGATTCGGCGGTTTTTCACCACTGGAAAC
GAGTCACCGACAATTCCACCGACTATCCGTTCGCCAAGTTCAACAAGCAA
CTGGAGGTGCCCTCGTACACGATGACGGAGTACAATGCCCACTTAAGGAA
CAACATCAACAACTGGAGCAAGGTGCAGACCGATCACCTATTCGACCTGG
CCAGAAGGTTCGATCTTCGCTTCATTGTGATGGCAGATCGTTGGAACCGT
CAGCAGCATGGAACCAAAACTGTGGAGGAGCTCAAAGAACGCTACTATGA
GGTGGTCGCTCTGCTCGCCAAGGCCAAGAATCAGACGAGTGAGAAGAAAG
TATTTGTGTATGACGTCGAGCACGAACGGCGCCGCAAGGAGCAGCTGGAG
AAGCTGTTCAAACGCACGACACAACAGGTGGAGGAGGAGAATATGCTTAT
CAACGAGATGAAGAAAATCGAGGCGCGCAAAAAGGAACGCGAGCGCAAGA
CACAAGACTTGCAGAAGCTTATTTCGCAAGCGGATCAGCAGAATGAGCAC
GCATCGAATACGCCGAGTACGCGAAAGTACGAGAAGAAGCTGCACAAAAA
GAAGGTACATCAGCAGCCGCGACCCTCCAGGGTGGACTCGGTGGTTAATG
CCATAGAGATCGGTAGCAGCGGCATCAAGTTCGCCGACCTGCGCGGTTCC
GGGGTTTCTCTGCGCTCGCAGAGGATGAAGCTGCCGGCGAATATCGGCCA
GCGCAAAGTGAAAGCCCTCGAGCAGGCAATCCAGGAGTTTAAAGTTGATC
CCGCTCCGCCGCCCACGGAGGACATTTGCACCTCCTTCAACGAGCTTCGT
TCCGATATGGTATTGCTCTGCGAGCTTCGCACCGCCCTATCCACCTGCGT
CTACGAAATGGAGAGCCTGAAGCACCAATACGAAGCCGCCTGCCCGGGAA
AGACACTGAACATACCGCCCTCGCTGGTGCCCATCAAGACCGAAGCCCTG
GACAATAGCACAAATGCAAGCTTTCTAGACCAT

BO08873.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
DMAP1-RA 1302 CG11132-PA 1..1299 17..1315 6495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:37
Subject Length Description Subject Range Query Range Score Percent Strand
DMAP1-RA 1584 CG11132-RA 135..1434 16..1315 6500 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20644777..20645368 506..1097 2960 100 Plus
2R 25286936 2R 20644328..20644720 117..509 1965 100 Plus
2R 25286936 2R 20645427..20645582 1097..1252 780 100 Plus
2R 25286936 2R 20644170..20644272 16..118 515 100 Plus
2R 25286936 2R 20645651..20645715 1251..1315 325 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:07:35 has no hits.

BO08873.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:40 Download gff for BO08873.complete
Subject Subject Range Query Range Percent Splice Strand
DMAP1-RA 1..1302 17..1319 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:51 Download gff for BO08873.complete
Subject Subject Range Query Range Percent Splice Strand
DMAP1-RA 133..1437 16..1323 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:25 Download gff for BO08873.complete
Subject Subject Range Query Range Percent Splice Strand
DMAP1-RA 136..1434 17..1317 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:40 Download gff for BO08873.complete
Subject Subject Range Query Range Percent Splice Strand
DMAP1-RA 133..1437 16..1323 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:29 Download gff for BO08873.complete
Subject Subject Range Query Range Percent Splice Strand
DMAP1-RA 136..1434 17..1317 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:29 Download gff for BO08873.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20644171..20644271 17..117 100 -> Plus
2R 20644329..20644718 118..507 100 -> Plus
2R 20644779..20645368 508..1097 100 -> Plus
2R 20645428..20645582 1098..1252 100 -> Plus
2R 20645653..20645715 1253..1317 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:25 Download gff for BO08873.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16531676..16531776 17..117 100 -> Plus
arm_2R 16531834..16532223 118..507 100 -> Plus
arm_2R 16532284..16532873 508..1097 100 -> Plus
arm_2R 16532933..16533087 1098..1252 100 -> Plus
arm_2R 16533158..16533220 1253..1317 96   Plus

BO08873.pep Sequence

Translation from 16 to 1333

> BO08873.pep
MSADVRDILDMERANTPEVTRDSFLATKKRNFERTKTASRRPEGMHREVF
ALLYTDKKDAPPLLPTDTALGIGAGYKETKARLGMKKVRKWEWAPFSNPA
RNDSAVFHHWKRVTDNSTDYPFAKFNKQLEVPSYTMTEYNAHLRNNINNW
SKVQTDHLFDLARRFDLRFIVMADRWNRQQHGTKTVEELKERYYEVVALL
AKAKNQTSEKKVFVYDVEHERRRKEQLEKLFKRTTQQVEEENMLINEMKK
IEARKKERERKTQDLQKLISQADQQNEHASNTPSTRKYEKKLHKKKVHQQ
PRPSRVDSVVNAIEIGSSGIKFADLRGSGVSLRSQRMKLPANIGQRKVKA
LEQAIQEFKVDPAPPPTEDICTSFNELRSDMVLLCELRTALSTCVYEMES
LKHQYEAACPGKTLNIPPSLVPIKTEALDNSTNASFLDH

BO08873.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:52
Subject Length Description Subject Range Query Range Score Percent Strand
DMAP1-PA 433 CG11132-PA 1..433 1..433 2248 100 Plus