Clone BO08879 Report

Search the DGRC for BO08879

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:88
Well:79
Vector:pDNR-Dual
Associated Gene/Transcriptaralar1-RA
Protein status:BO08879.pep: validated full length
Sequenced Size:2080

Clone Sequence Records

BO08879.3prime Sequence

941 bp (892 high quality bases) assembled on 2006-01-09

> BO08879.3prime
ATGGTCTAGAAAGCTTGCGGATCCCGTGGCCGTCGAGGGCGAGGCAGCGG
TTACTCCGCGTCCAAATCGCGGCAGATACAACCCGAACTTGGACTCCACT
CCCGCCAGAAGAGGAACTGCCGCCCGGTAGCCACCAATGTGGTCCACGTT
TTCGGTGGTCACCGACGCAGCCGCCTGTTCCAGGGGAGTGGTGATCTTGT
GCGCCTCGGATCCCTTGGGCTGAGTGCCTCCGAAGTCCACGTAGAAGAGG
CGCTGTAGCAGTTCGTAGGTCACCAGGGTCACACCGAACTGTGGTGAGGA
ACGGAACACTCGAGCGGCTGTGCCCTTCCAGAAGGCTCTGGGTCCCTCCT
CGGCCATGATCTTCTTGGTGGCATCCCATACGCCGGTGTAGGTGGTCTGT
CCAGATCGGGCAACCACCTGAAGGCGGGTCTTGATGACGTCGGCGGGCGT
GACAAGGGAGGCGGCCGGAACACCGGCGATGGCACCGGCGGCCAGCAGGG
TGAGTGGATGATTGTAGCCGTCCTTGTCGGCCATCATGGCCTTGGTGTGG
GCGTAGGTCGGGAAGTAGATGGCCGAGAATGGCACATCGCGGAGGAGACA
TGCTCTGGCTCCCTTGTAGAGGCCAAAGAGTCCCAGTTCCCGGACCACCG
ACCACGCGCGGATCTTGCTCCCACTAGCGATTTCTCCCGCCACCTGGAGA
CGGATCTTCACAATCTCCAGGGGATTGGTGAACACCACCTGCGACGCACC
GGCACATCCACCAGCCAGAACTTCCGCCCATGTGGGAATGTTGCCCTTCT
TGTCGGTGAGTTTGTCCCTCACCAAATCATTCACCGTCAGTTTGATGGCT
TTCTCGGGGGGCACGCCCATTAGCTGGGGCAGGAGACCTCTGTAGAGACC
CATGAATCCCTCGTGGCGAACACCTTTTTGAAGCAGTCCCA

BO08879.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG2139-PA 2049 aralar1-RA 1144..2046 921..19 4490 99.8 Minus
CG2139-PD 2049 aralar1-RD 1144..2046 921..19 4490 99.8 Minus
CG2139-PC 2088 aralar1-RC 1183..2085 921..19 4490 99.8 Minus
CG2139-PB 2040 aralar1-RB 1135..2037 921..19 4490 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
aralar1-RE 2845 CG2139-RE 1349..2272 941..19 4580 99.8 Minus
aralar1-RF 2770 CG2139-RF 1274..2197 941..19 4580 99.8 Minus
aralar1-RB 2945 CG2139-RB 1449..2372 941..19 4580 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30446564..30447170 315..921 3020 99.8 Plus
3R 32079331 3R 30446208..30446504 19..315 1485 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:42:04 has no hits.

BO08879.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:58 Download gff for BO08879.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2139-PC 1163..2088 16..940 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:04 Download gff for BO08879.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2139-PB 1115..2040 16..940 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:42:23 Download gff for BO08879.3prime
Subject Subject Range Query Range Percent Splice Strand
aralar1-RB 1450..2372 19..940 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:17:06 Download gff for BO08879.3prime
Subject Subject Range Query Range Percent Splice Strand
aralar1-RB 1450..2372 19..940 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:17:06 Download gff for BO08879.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30446208..30446503 19..314 100 <- Plus
3R 30446564..30447173 315..923 99 <- Plus
3R 30447230..30447246 924..940 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:42:23 Download gff for BO08879.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26271930..26272225 19..314 100 <- Plus
arm_3R 26272286..26272895 315..923 99 <- Plus
arm_3R 26272952..26272968 924..940 100   Plus

BO08879.5prime Sequence

938 bp (794 high quality bases) assembled on 2006-01-09

> BO08879.5prime
GAAGTTATCAGTCGACATGCCGTTGACCAAGAGTTTGCCAAATTCTCCGT
CGCTTTTGAAGCGCGCCGGCACCGAAAAGTTGCGAGAGGTGTTCCTGAAG
TACGCATCCATCCAGAAGAATGGCGAGCACTATATGACCAGCGAGGACTT
CGTGCGAAAGTTCCTGGGACTCTTTTCCGAATCTGCATTTAATGACGAAT
CGGTGCGCCTGCTGGCCAACATTGCGGACACGAGCAAGGATGGACTCATC
TCCTTCTCGGAGTTCCAGGCGTTCGAGGGTCTGCTCTGCACTCCAGATGC
CCTCTACAGGACCGCTTTCCAGCTGTTCGACCGCAAGGGCAACGGCACTG
TTTCCTATGCTGACTTCGCTGATGTCGTACAAAAAACTGAACTGCACTCA
AAGATACCTTTTAGCTTAGATGGCCCCTTTATCAAGCGCTACTTTGGTGA
TAAGAAGCAACGCCTTATCAACTATGCTGAGTTCACGCAGCTGCTGCACG
ACTTTCACGAGGAGCACGCGATGGAGGCCTTCCGCAGCAAGGATCCAGCT
GGCACTGGGTTCATCTCGCCATTGGACTTCCAGGACATCATAGTTAATGT
TAAGCGGCATTTACTGACCCCCGGCGTCAGGGACAATCTAGTTTCGGTAA
CTGAGGGTCACAAAGTGAGCTTCCCGTATTTCATCGCATTTACCTCGCTG
CTGAACAACATGGAACTGATCAAACAAGTCTACCTGCACGCCACCGAGGG
CAGTCGCACGGATATGATCACCAAGGATCAGATCCTCCTCGCCGCCCAAA
CGATGAGCCAAATCACGCCGCTGGAGATCGACATACTTTTTCACCTGGCG
GGCGCCGTCCATCAAGCAGGCCGCATCGACTATAGTGACCTGAGCAACAT
CGCACCCGAGCATTACACCAAGCATATGACACATCGTC

BO08879.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG2139-PA 2049 aralar1-RA 1..922 17..938 4585 99.8 Plus
CG2139-PD 2049 aralar1-RD 1..922 17..938 4585 99.8 Plus
CG2139-PC 2088 aralar1-RC 67..961 44..938 4450 99.8 Plus
CG2139-PB 2040 aralar1-RB 19..913 44..938 4450 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:26:48
Subject Length Description Subject Range Query Range Score Percent Strand
aralar1-RF 2770 CG2139-RF 152..1073 17..938 4595 99.9 Plus
aralar1-RD 2340 CG2139-RD 152..1073 17..938 4595 99.9 Plus
aralar1-RA 2770 CG2139-RA 152..1073 17..938 4595 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:26:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30448346..30448570 870..646 1110 99.6 Minus
3R 32079331 3R 30448632..30448829 649..452 990 100 Minus
3R 32079331 3R 30449042..30449208 363..197 820 99.4 Minus
3R 32079331 3R 30449806..30449959 197..44 770 100 Minus
3R 32079331 3R 30448896..30448988 451..359 465 100 Minus
3R 32079331 3R 30447511..30447579 938..870 345 100 Minus
Blast to na_te.dros performed on 2015-02-04 01:26:45 has no hits.

BO08879.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:55:59 Download gff for BO08879.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2139-PD 1..922 17..938 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:05 Download gff for BO08879.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2139-PD 1..922 17..938 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:41:03 Download gff for BO08879.5prime
Subject Subject Range Query Range Percent Splice Strand
aralar1-RA 147..1073 9..938 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:29:32 Download gff for BO08879.5prime
Subject Subject Range Query Range Percent Splice Strand
aralar1-RA 147..1073 9..938 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:29:32 Download gff for BO08879.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30447511..30447578 871..938 100 <- Minus
3R 30448346..30448569 647..870 99 <- Minus
3R 30448635..30448829 452..646 100 <- Minus
3R 30448896..30448987 360..451 100 <- Minus
3R 30449046..30449208 197..359 100 <- Minus
3R 30449807..30449959 44..196 100 <- Minus
3R 30450229..30450260 9..43 91   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:41:03 Download gff for BO08879.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26273233..26273300 871..938 100 <- Minus
arm_3R 26274068..26274291 647..870 99 <- Minus
arm_3R 26274357..26274551 452..646 100 <- Minus
arm_3R 26274618..26274709 360..451 100 <- Minus
arm_3R 26274768..26274930 197..359 100 <- Minus
arm_3R 26275529..26275681 44..196 100 <- Minus
arm_3R 26275951..26275982 9..43 91   Minus

BO08879.complete Sequence

2080 bp (2080 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631299

> BO08879.complete
GAAGTTATCAGTCGACATGCCGTTGACCAAGAGTTTGCCAAATTCTCCGT
CGCTTTTGAAGCGCGCCGGCACCGAAAAGTTGCGAGAGGTGTTCCTGAAG
TACGCATCCATCCAGAAGAATGGCGAGCACTATATGACCAGCGAGGACTT
CGTGCGAAAGTTCCTGGGACTCTTTTCCGAATCTGCATTTAATGACGAAT
CGGTGCGCCTGCTGGCCAACATTGCGGACACGAGCAAGGATGGACTCATC
TCCTTCTCGGAGTTCCAGGCGTTCGAGGGTCTGCTCTGCACTCCAGATGC
CCTCTACAGGACCGCTTTCCAGCTGTTCGACCGCAAGGGCAACGGCACTG
TTTCCTATGCTGACTTCGCTGATGTCGTACAAAAAACTGAACTGCACTCA
AAGATACCTTTTAGCTTAGATGGCCCCTTTATCAAGCGCTACTTTGGTGA
TAAGAAGCAACGCCTTATCAACTATGCTGAGTTCACGCAGCTGCTGCACG
ACTTTCACGAGGAGCACGCGATGGAGGCCTTCCGCAGCAAGGATCCAGCT
GGCACTGGGTTCATCTCGCCATTGGACTTCCAGGACATCATAGTTAATGT
TAAGCGGCATTTACTGACCCCCGGCGTCAGGGACAATCTAGTTTCGGTAA
CTGAGGGTCACAAAGTGAGCTTCCCGTATTTCATCGCATTTACCTCGCTG
CTGAACAACATGGAACTGATCAAACAAGTCTACCTGCACGCCACCGAGGG
CAGTCGCACGGATATGATCACCAAGGATCAGATCCTCCTCGCCGCCCAAA
CGATGAGCCAAATCACGCCGCTGGAGATCGACATACTTTTCCACCTGGCG
GGCGCCGTCCATCAAGCAGGCCGCATCGACTATAGTGACCTGAGCAACAT
CGCACCCGAGCATTACACCAAGCATATGACACATCGTCTGGCGGAGATCA
AGGCGGTGGAGAGTCCTGCGGACCGATCTGCCTTTATTCAGGTCCTGGAG
AGCTCTTACCGTTTCACTCTCGGTTCCTTTGCCGGCGCTGTGGGCGCCAC
TGTGGTCTACCCCATCGATCTAGTCAAGACTCGAATGCAGAACCAGCGAG
CGGGTTCCTATATTGGTGAAGTTGCCTATCGAAACTCATGGGACTGCTTC
AAAAAGGTGGTTCGCCACGAGGGATTCATGGGTCTCTACAGAGGTCTCCT
GCCCCAGCTAATGGGCGTGGCCCCCGAGAAAGCCATCAAACTGACGGTGA
ATGATTTGGTGAGGGACAAACTCACCGACAAGAAGGGCAACATTCCCACA
TGGGCGGAAGTTCTGGCTGGTGGATGTGCCGGTGCGTCGCAGGTGGTGTT
CACCAATCCCCTGGAGATTGTGAAGATCCGTCTCCAGGTGGCGGGAGAAA
TCGCTAGTGGGAGCAAGATCCGCGCGTGGTCGGTGGTCCGGGAACTGGGA
CTCTTTGGCCTCTACAAGGGAGCCAGAGCATGTCTCCTCCGCGATGTGCC
ATTCTCGGCCATCTACTTCCCGACCTACGCCCACACCAAGGCCATGATGG
CCGACAAGGACGGCTACAATCATCCACTCACCCTGCTGGCCGCCGGTGCC
ATCGCCGGTGTTCCGGCCGCCTCCCTTGTCACGCCCGCCGACGTCATCAA
GACCCGCCTTCAGGTGGTTGCCCGATCTGGACAGACCACCTACACCGGCG
TATGGGATGCCACCAAGAAGATCATGGCCGAGGAGGGACCCAGAGCCTTC
TGGAAGGGCACAGCCGCTCGAGTGTTCCGTTCCTCACCACAGTTCGGTGT
GACCCTGGTGACCTACGAACTGCTACAGCGCCTCTTCTACGTGGACTTCG
GAGGCACTCAGCCCAAGGGATCCGAGGCGCACAAGATCACCACTCCCCTG
GAACAGGCGGCTGCGTCGGTGACCACCGAAAACGTGGACCACATTGGTGG
CTACCGGGCGGCAGTTCCTCTTCTGGCGGGAGTGGAGTCCAAGTTCGGGT
TGTATCTGCCGCGATTTGGACGCGGAGTAACCGCTGCCTCGCCCTCGACG
GCCACGGGATCCGCAAGCTTTCTAGACCAT

BO08879.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:47:43
Subject Length Description Subject Range Query Range Score Percent Strand
aralar1-RF 2085 CG2139-PF 1..2046 17..2062 10230 100 Plus
aralar1-RD 2049 CG2139-PD 1..2046 17..2062 10230 100 Plus
aralar1-RA 2049 CG2139-PA 1..2046 17..2062 10230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:47:45
Subject Length Description Subject Range Query Range Score Percent Strand
aralar1-RF 2770 CG2139-RF 152..2197 17..2062 10230 100 Plus
aralar1-RD 2340 CG2139-RD 152..2197 17..2062 10230 100 Plus
aralar1-RA 2770 CG2139-RA 152..2197 17..2062 10230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:47:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30446564..30447175 1766..1155 3060 100 Minus
3R 32079331 3R 30446208..30446504 2062..1766 1485 100 Minus
3R 32079331 3R 30448346..30448570 870..646 1125 100 Minus
3R 32079331 3R 30448632..30448829 649..452 990 100 Minus
3R 32079331 3R 30447412..30447579 1037..870 840 100 Minus
3R 32079331 3R 30449042..30449208 363..197 820 99.4 Minus
3R 32079331 3R 30449806..30449959 197..44 770 100 Minus
3R 32079331 3R 30447228..30447349 1158..1037 610 100 Minus
3R 32079331 3R 30448896..30448988 451..359 465 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:47:42 has no hits.

BO08879.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:47 Download gff for BO08879.complete
Subject Subject Range Query Range Percent Splice Strand
aralar1-RD 1..2049 17..2065 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:17:54 Download gff for BO08879.complete
Subject Subject Range Query Range Percent Splice Strand
aralar1-RD 147..2197 9..2062 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:04:39 Download gff for BO08879.complete
Subject Subject Range Query Range Percent Splice Strand
aralar1-RA 152..2197 17..2064 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:47 Download gff for BO08879.complete
Subject Subject Range Query Range Percent Splice Strand
aralar1-RD 147..2197 9..2062 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:49:15 Download gff for BO08879.complete
Subject Subject Range Query Range Percent Splice Strand
aralar1-RA 152..2197 17..2064 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:49:15 Download gff for BO08879.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30448346..30448569 647..870 100 <- Minus
3R 30448635..30448829 452..646 100 <- Minus
3R 30448896..30448987 360..451 100 <- Minus
3R 30449046..30449208 197..359 100 <- Minus
3R 30449807..30449959 44..196 100 <- Minus
3R 30450229..30450255 17..43 100   Minus
3R 30446205..30446503 1767..2064 99 <- Minus
3R 30446564..30447173 1157..1766 100 <- Minus
3R 30447230..30447348 1038..1156 100 <- Minus
3R 30447412..30447578 871..1037 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:04:39 Download gff for BO08879.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26275529..26275681 44..196 100 <- Minus
arm_3R 26275951..26275977 17..43 100   Minus
arm_3R 26274068..26274291 647..870 100 <- Minus
arm_3R 26274357..26274551 452..646 100 <- Minus
arm_3R 26274618..26274709 360..451 100 <- Minus
arm_3R 26271927..26272225 1767..2064 99 <- Minus
arm_3R 26272286..26272895 1157..1766 100 <- Minus
arm_3R 26272952..26273070 1038..1156 100 <- Minus
arm_3R 26273134..26273300 871..1037 100 <- Minus
arm_3R 26274768..26274930 197..359 100 <- Minus

BO08879.pep Sequence

Translation from 16 to 2080

> BO08879.pep
MPLTKSLPNSPSLLKRAGTEKLREVFLKYASIQKNGEHYMTSEDFVRKFL
GLFSESAFNDESVRLLANIADTSKDGLISFSEFQAFEGLLCTPDALYRTA
FQLFDRKGNGTVSYADFADVVQKTELHSKIPFSLDGPFIKRYFGDKKQRL
INYAEFTQLLHDFHEEHAMEAFRSKDPAGTGFISPLDFQDIIVNVKRHLL
TPGVRDNLVSVTEGHKVSFPYFIAFTSLLNNMELIKQVYLHATEGSRTDM
ITKDQILLAAQTMSQITPLEIDILFHLAGAVHQAGRIDYSDLSNIAPEHY
TKHMTHRLAEIKAVESPADRSAFIQVLESSYRFTLGSFAGAVGATVVYPI
DLVKTRMQNQRAGSYIGEVAYRNSWDCFKKVVRHEGFMGLYRGLLPQLMG
VAPEKAIKLTVNDLVRDKLTDKKGNIPTWAEVLAGGCAGASQVVFTNPLE
IVKIRLQVAGEIASGSKIRAWSVVRELGLFGLYKGARACLLRDVPFSAIY
FPTYAHTKAMMADKDGYNHPLTLLAAGAIAGVPAASLVTPADVIKTRLQV
VARSGQTTYTGVWDATKKIMAEEGPRAFWKGTAARVFRSSPQFGVTLVTY
ELLQRLFYVDFGGTQPKGSEAHKITTPLEQAAASVTTENVDHIGGYRAAV
PLLAGVESKFGLYLPRFGRGVTAASPSTATGSASFLDH

BO08879.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:59:43
Subject Length Description Subject Range Query Range Score Percent Strand
aralar1-PF 694 CG2139-PF 1..688 1..688 3500 99.3 Plus
aralar1-PD 682 CG2139-PD 1..682 1..682 3496 100 Plus
aralar1-PA 682 CG2139-PA 1..682 1..682 3496 100 Plus
aralar1-PB 679 CG2139-PB 7..679 10..682 3449 100 Plus
aralar1-PC 695 CG2139-PC 23..695 10..682 3449 100 Plus