Clone Sequence Records
BO08882.3prime Sequence
926 bp (804 high quality bases) assembled on 2006-01-10
> BO08882.3prime
ATGGTCTAGAAAGCTTGCTGTCATGGTGCCAAAGACGGGATTGTGACGGC
AAATGCTGGGGCCATACTCCTCGTAGGCAGCCTTCGTGTGACACACCTGA
TAGAACTCGGGCGTTGAAGCCAACATGCTGCCTCCAAACCACACGGCGTA
CCTCTGCATGTGGTGCGTAATCACCTGAACATCAATGGGTTTTGGCTTAA
TGCGTCCCTCGGACAAATTCTCGCTGATCCGGAGACGTGTGTCCACCGAT
CGCTTGATATCTCGCTGCAACCTCCTGCCGAAGTCCTTGAACATCGTTGA
TCCACCGCTCAGAACAATGTTATTGTATAGAGGACGCCGCACATCGATTG
GGCAGTTTTGGATGACATTATCCACTATTTCCGACAGTGGAATGGTAAAG
TCGGGGTTTGAGAACTCGGGATGGAAGAAGATCTCGGGTCCCAGGAATCG
CTCGTAGCCCACGTCCACATTGAACGGCGCCTTGGTTACCGTGTTAACGC
CGCTAAAGTTGCGTATCCACTTGCCCGGCTCCGTGTCGTACTTGGCAAAT
TCTTTGGCGATATCGGGACAGATGTAGCAGTGCTTCTCCTTGATCGCTTT
AGCAGTCTCGAGGCTCTGTTCCGGCGGAATGCCCACCTCCCGTTCGCGTA
GCAGGCTCTGGATGAACGAGGTGATATTGCGGCCCGCGATGGGAATGTGC
TTGATGCAGGAGCCGATCACATAGCCCTCGGCCACGGGTATGACGTGCGT
CACTCCATCGCCGCTGTCCACCACGATGCCTGTAAGGGTACGCTCCTCTG
CGGACCGGGAGGCCCAACTGGCGGCTAGGGCAAGCACCGCCTGGACGGCG
ATATACAGACCAGGAACGTTGAACGTCTCAAACATTATCTCCGCGGTGTA
CTCCCGATTTTCGGGCGTATTTAGCG
BO08882.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7558-PA | 1257 | Arp66B-RA | 347..1254 | 926..19 | 4540 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:18:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp3-RB | 1585 | CG7558-RB | 524..1431 | 926..19 | 4540 | 100 | Minus |
| Arp3-RA | 1983 | CG7558-RA | 524..1431 | 926..19 | 4540 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:18:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8114257..8114794 | 196..733 | 2690 | 100 | Plus |
| 3L | 28110227 | 3L | 8115029..8115223 | 732..926 | 975 | 100 | Plus |
| 3L | 28110227 | 3L | 8113959..8114052 | 19..112 | 470 | 100 | Plus |
| 3L | 28110227 | 3L | 8114113..8114198 | 112..197 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:18:37 has no hits.
BO08882.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:02 Download gff for
BO08882.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7558-PA | 347..1257 | 15..926 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:10 Download gff for
BO08882.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7558-PA | 347..1257 | 15..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:12:14 Download gff for
BO08882.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp3-RA | 524..1436 | 11..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:24:46 Download gff for
BO08882.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp3-RA | 524..1436 | 11..926 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:24:46 Download gff for
BO08882.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8113954..8114051 | 11..111 | 96 | <- | Plus |
| 3L | 8114113..8114196 | 112..195 | 100 | <- | Plus |
| 3L | 8114257..8114793 | 196..732 | 100 | <- | Plus |
| 3L | 8115030..8115223 | 733..926 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:12:14 Download gff for
BO08882.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8107213..8107296 | 112..195 | 100 | <- | Plus |
| arm_3L | 8107054..8107151 | 11..111 | 96 | <- | Plus |
| arm_3L | 8107357..8107893 | 196..732 | 100 | <- | Plus |
| arm_3L | 8108130..8108323 | 733..926 | 100 | | Plus |
BO08882.5prime Sequence
847 bp (815 high quality bases) assembled on 2006-01-09
> BO08882.5prime
GAAGTTATCAGTCGACATGGCAGGCAGGCTACCGGCATGCGTAATCGATG
TGGGCACCGGCTACTCCAAACTGGGATTTGCCGGGAATAAAGAGCCGCAG
TTCATTATTCCCTCGGCGATTGCCATCAAGGAGTCGGCACGAGTGGGAGA
CACCAACACACGGCGCATCACAAAGGGCATCGAGGACCTGGACTTCTTCA
TCGGCGATGAGGCCTTCGATGCCACCGGCTACTCCATCAAGTATCCGGTG
CGTCATGGTCTGGTGGAGGACTGGGACTTGATGGAGCGCTTTCTGGAGCA
GTGCGTCTTTAAGTATCTGCGCGCCGAGCCTGAGGATCACTACTTCCTGC
TGACTGAGCCGCCGCTAAATACGCCCGAAAATCGGGAGTACACCGCGGAG
ATAATGTTTGAGACGTTCAACGTTCCTGGTCTGTATATCGCCGTCCAGGC
GGTGCTTGCCCTAGCCGCCAGTTGGGCCTCCCGGTCCGCAGAGGAGCGTA
CCCTTACAGGCATCGTGGTGGACAGCGGCGATGGAGTGACGCACGTCATA
CCCGTGGCCGAGGGCTATGTGATCGGCTCCTGCATCAAGCACATTCCCAT
CGCGGGCCGCAATATCACCTCGTTCATCCAGAGCCTGCTACGCGAACGGG
AGGTGGGCATTCCGCCGGAACAGAGCCTCGAGACTGCTAAAGCGATCAAG
GAGAAGCACTGCTACATCTGTCCCGATATCGCCAAAGAATTTGCCAAGTA
CGACACGGAGCCGGGCAAGTGGATACGCAACTTTAGCGGCGTTAACACGG
TAACCAAGGCGCCGTTCAATGTGGACGTGGGCTACGAGCGATTCCTG
BO08882.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7558-PA | 1257 | Arp66B-RA | 1..831 | 17..847 | 4155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:10:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp3-RB | 1585 | CG7558-RB | 177..1008 | 16..847 | 4160 | 100 | Plus |
| Arp3-RA | 1983 | CG7558-RA | 177..1008 | 16..847 | 4160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:10:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8115029..8115346 | 557..240 | 1590 | 100 | Minus |
| 3L | 28110227 | 3L | 8114503..8114794 | 847..556 | 1460 | 100 | Minus |
| 3L | 28110227 | 3L | 8115408..8115589 | 241..60 | 910 | 100 | Minus |
| 3L | 28110227 | 3L | 8115682..8115726 | 60..16 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:10:32 has no hits.
BO08882.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:03 Download gff for
BO08882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7558-PA | 1..831 | 17..847 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:12 Download gff for
BO08882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7558-PA | 1..831 | 17..847 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:53:02 Download gff for
BO08882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp3-RA | 170..1008 | 9..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:48:50 Download gff for
BO08882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp3-RA | 170..1008 | 9..847 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:48:50 Download gff for
BO08882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8114503..8114793 | 557..847 | 100 | <- | Minus |
| 3L | 8115030..8115344 | 242..556 | 100 | <- | Minus |
| 3L | 8115408..8115588 | 61..241 | 100 | <- | Minus |
| 3L | 8115682..8115733 | 9..60 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:53:02 Download gff for
BO08882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8107603..8107893 | 557..847 | 100 | <- | Minus |
| arm_3L | 8108130..8108444 | 242..556 | 100 | <- | Minus |
| arm_3L | 8108508..8108688 | 61..241 | 100 | <- | Minus |
| arm_3L | 8108782..8108833 | 9..60 | 96 | | Minus |
BO08882.complete Sequence
1288 bp (1288 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631300
> BO08882.complete
GAAGTTATCAGTCGACATGGCAGGCAGGCTACCGGCATGCGTAATCGATG
TGGGCACCGGCTACTCCAAACTGGGATTTGCCGGGAATAAAGAGCCGCAG
TTCATTATTCCCTCGGCGATTGCCATCAAGGAGTCGGCACGAGTGGGAGA
CACCAACACACGGCGCATCACAAAGGGCATCGAGGACCTGGACTTCTTCA
TCGGCGATGAGGCCTTCGATGCCACCGGCTACTCCATCAAGTATCCGGTG
CGTCATGGTCTGGTGGAGGACTGGGACTTGATGGAGCGCTTTCTGGAGCA
GTGCGTCTTTAAGTATCTGCGCGCCGAGCCTGAGGATCACTACTTCCTGC
TGACTGAGCCGCCGCTAAATACGCCCGAAAATCGGGAGTACACCGCGGAG
ATAATGTTTGAGACGTTCAACGTTCCTGGTCTGTATATCGCCGTCCAGGC
GGTGCTTGCCCTAGCCGCCAGTTGGGCCTCCCGGTCCGCAGAGGAGCGTA
CCCTTACAGGCATCGTGGTGGACAGCGGCGATGGAGTGACGCACGTCATA
CCCGTGGCCGAGGGCTATGTGATCGGCTCCTGCATCAAGCACATTCCCAT
CGCGGGCCGCAATATCACCTCGTTCATCCAGAGCCTGCTACGCGAACGGG
AGGTGGGCATTCCGCCGGAACAGAGCCTCGAGACTGCTAAAGCGATCAAG
GAGAAGCACTGCTACATCTGTCCCGATATCGCCAAAGAATTTGCCAAGTA
CGACACGGAGCCGGGCAAGTGGATACGCAACTTTAGCGGCGTTAACACGG
TAACCAAGGCGCCGTTCAATGTGGACGTGGGCTACGAGCGATTCCTGGGA
CCCGAGATCTTCTTCCATCCCGAGTTCTCAAACCCCGACTTTACCATTCC
ACTGTCGGAAATAGTGGATAATGTCATCCAAAACTGCCCAATCGATGTGC
GGCGTCCTCTATACAATAACATTGTTCTGAGCGGTGGATCAACGATGTTC
AAGGACTTCGGCAGGAGGTTGCAGCGAGATATCAAGCGATCGGTGGACAC
ACGTCTCCGGATCAGCGAGAATTTGTCCGAGGGACGCATTAAGCCAAAAC
CCATTGATGTTCAGGTGATTACGCACCACATGCAGAGGTACGCCGTGTGG
TTTGGAGGCAGCATGTTGGCTTCAACGCCCGAGTTCTATCAGGTGTGTCA
CACGAAGGCTGCCTACGAGGAGTATGGCCCCAGCATTTGCCGTCACAATC
CCGTCTTTGGCACCATGACAGCAAGCTTTCTAGACCAT
BO08882.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:25:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp3-RB | 1257 | CG7558-PB | 1..1254 | 17..1270 | 6270 | 100 | Plus |
| Arp3-RA | 1257 | CG7558-PA | 1..1254 | 17..1270 | 6270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:25:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp3-RB | 1585 | CG7558-RB | 177..1431 | 16..1270 | 6275 | 100 | Plus |
| Arp3-RA | 1983 | CG7558-RA | 177..1431 | 16..1270 | 6275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:25:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8114257..8114794 | 1093..556 | 2690 | 100 | Minus |
| 3L | 28110227 | 3L | 8115029..8115346 | 557..240 | 1590 | 100 | Minus |
| 3L | 28110227 | 3L | 8115408..8115589 | 241..60 | 910 | 100 | Minus |
| 3L | 28110227 | 3L | 8113959..8114052 | 1270..1177 | 470 | 100 | Minus |
| 3L | 28110227 | 3L | 8114113..8114198 | 1177..1092 | 430 | 100 | Minus |
| 3L | 28110227 | 3L | 8115682..8115726 | 60..16 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:25:31 has no hits.
BO08882.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:41 Download gff for
BO08882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp66B-RA | 1..1257 | 17..1274 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:53 Download gff for
BO08882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp66B-RA | 168..1434 | 9..1278 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:20 Download gff for
BO08882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp3-RA | 178..1431 | 17..1272 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:41 Download gff for
BO08882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp66B-RA | 168..1434 | 9..1278 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:38 Download gff for
BO08882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp3-RA | 178..1431 | 17..1272 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:38 Download gff for
BO08882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8113957..8114051 | 1178..1272 | 97 | <- | Minus |
| 3L | 8114113..8114196 | 1094..1177 | 100 | <- | Minus |
| 3L | 8114257..8114793 | 557..1093 | 100 | <- | Minus |
| 3L | 8115030..8115344 | 242..556 | 100 | <- | Minus |
| 3L | 8115408..8115588 | 61..241 | 100 | <- | Minus |
| 3L | 8115682..8115725 | 17..60 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:20 Download gff for
BO08882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8107057..8107151 | 1178..1272 | 97 | <- | Minus |
| arm_3L | 8107213..8107296 | 1094..1177 | 100 | <- | Minus |
| arm_3L | 8107357..8107893 | 557..1093 | 100 | <- | Minus |
| arm_3L | 8108130..8108444 | 242..556 | 100 | <- | Minus |
| arm_3L | 8108508..8108688 | 61..241 | 100 | <- | Minus |
| arm_3L | 8108782..8108825 | 17..60 | 100 | | Minus |
BO08882.pep Sequence
Translation from 16 to 1288
> BO08882.pep
MAGRLPACVIDVGTGYSKLGFAGNKEPQFIIPSAIAIKESARVGDTNTRR
ITKGIEDLDFFIGDEAFDATGYSIKYPVRHGLVEDWDLMERFLEQCVFKY
LRAEPEDHYFLLTEPPLNTPENREYTAEIMFETFNVPGLYIAVQAVLALA
ASWASRSAEERTLTGIVVDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRNI
TSFIQSLLREREVGIPPEQSLETAKAIKEKHCYICPDIAKEFAKYDTEPG
KWIRNFSGVNTVTKAPFNVDVGYERFLGPEIFFHPEFSNPDFTIPLSEIV
DNVIQNCPIDVRRPLYNNIVLSGGSTMFKDFGRRLQRDIKRSVDTRLRIS
ENLSEGRIKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKAAY
EEYGPSICRHNPVFGTMTASFLDH
BO08882.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp3-PB | 418 | CG7558-PB | 1..418 | 1..418 | 2211 | 100 | Plus |
| Arp3-PA | 418 | CG7558-PA | 1..418 | 1..418 | 2211 | 100 | Plus |
| Act87E-PC | 376 | CG18290-PC | 8..370 | 7..407 | 648 | 35.8 | Plus |
| Act87E-PB | 376 | CG18290-PB | 8..370 | 7..407 | 648 | 35.8 | Plus |
| Act87E-PA | 376 | CG18290-PA | 8..370 | 7..407 | 648 | 35.8 | Plus |
