Clone BO08883 Report

Search the DGRC for BO08883

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:88
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptCG11266-RA
Protein status:BO08883.pep: validated full length
Sequenced Size:1816

Clone Sequence Records

BO08883.3prime Sequence

908 bp (843 high quality bases) assembled on 2006-01-10

> BO08883.3prime
ATGGTCTAGAAAGCTTGCATCGTCGGTGTTCTTGCGCGTGGACGTCACCA
GATCGACGGCGTTGATGGAGTCCGGAAACATGGTGTGATAGTTGATCACG
GGCACGTAGGCCGCCGTGATCACTCGACCGGCAAACCAGCGTCCATGCAG
TGCATTCACTGCCAGCACTGCGGTCGTTGTGCTCGGGCACTTGACATACA
CGGTTCCCGTGTGCGAAATGGTGTCCACGTGGATGTGCAGCACCCCGCCG
TGTTTGGCGCACTCCTCCAGCACATCGTCGCGGATCTCAACGTCCCAGGT
AGGATTTGTCTCGGTACGCGGATCAAACATATTGGACAGTATGAAGCACT
GTGTGGCTATCGATGGTGCCACCTCCTGCTGCTGCAACGGCGCCGGTTGA
GGTGCTGTAGCCAGCAGCGCATTGGCAGCCGCCTGGGGCACTGCCAAACC
GGCTCCTTCCGCCAGCTTGAACATCAGCTGCAGACGTCCCGTGGCACCCA
GATCGATGCCCGTGCGATCCATCTCGTCGGTGTCCAGCGAGGTGGTATTC
ATGTCCAGTCGCTCCGTCACATTGCCCACTTTCATGAGCCGACCGGCCAG
TTCAAAGCCGTTCAGCTGTTCCAGAGCCTTTTTGGCATCGTCAGCATTGT
GGTACGTGATAAAGCCGTAGCCCTTGGATCGGCCCGTCTCCGTATCCATG
ATCAGTTGAATGGCATCGATCTTGCCAAAGGGCTCGAATATGCCCCGCAG
CATGTCCTCGGTAATGTTGAAGTGCAGTGATCCCACGTAGAGGCGCATGG
GACCCGTGTGACTCTTCGGTTGGAATGCCGGCGCTGCATTCTGGAGACGA
TTCTTCTCAGCCTGCGTGTGCTGCACCATGATGGGTACACCGAGCAGCCG
CTGGCCAG

BO08883.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG11266-PA 1785 CG11266-RA 893..1782 908..19 4450 100 Minus
CG11266-PB 1785 CG11266-RB 893..1782 908..19 4450 100 Minus
CG11266-PF 864 CG11266-RF 1..861 879..19 4305 100 Minus
CG11266-PG 864 CG11266-RG 1..861 879..19 4305 100 Minus
CG11266-PD 864 CG11266-RD 1..861 879..19 4305 100 Minus
CG11266-PE 864 CG11266-RE 1..861 879..19 4305 100 Minus
CG11266-PC 864 CG11266-RC 1..861 879..19 4305 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
Caper-RL 2484 CG11266-RL 1429..2318 908..19 4450 100 Minus
Caper-RK 3145 CG11266-RK 1825..2714 908..19 4450 100 Minus
Caper-RJ 2453 CG11266-RJ 1398..2287 908..19 4450 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:00:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7036811..7037447 655..19 3185 100 Minus
2L 23513712 2L 7036469..7036722 908..655 1270 100 Minus
Blast to na_te.dros performed on 2015-02-06 11:00:15 has no hits.

BO08883.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:04 Download gff for BO08883.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11266-PB 893..1785 16..908 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:13 Download gff for BO08883.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11266-PB 893..1785 16..908 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:31:58 Download gff for BO08883.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11266-RE 1398..2293 12..908 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:41:42 Download gff for BO08883.3prime
Subject Subject Range Query Range Percent Splice Strand
Caper-RJ 1398..2293 12..908 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:41:42 Download gff for BO08883.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7036469..7036722 655..908 100 -> Minus
2L 7036812..7037453 12..654 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:31:58 Download gff for BO08883.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7036469..7036722 655..908 100 -> Minus
arm_2L 7036812..7037453 12..654 99   Minus

BO08883.5prime Sequence

925 bp (845 high quality bases) assembled on 2006-01-09

> BO08883.5prime
GAAGTTATCAGTCGACATGGCCGAGGACTTTGATGTGGAGGCGATGCTCG
AGGCGCCGTACATGAAAAACAATGTCAGTGCGGGCAGCGGTGGAAGTGGT
GGACGCAAGCGCAGCGGCAGCAGTCCAGGCGGCGGCGGTGGACACGATGA
CGACTACGCCGAGAATGGTCCGCGGAACGGCAGCGGCGGCGGAAGCTCAC
ACAAAAAGCAAAGCAAACGATCCCGGAGTAGAAGCGGCTCGCGTGATGGC
AAATCTCGACGAGATCGCGGCAATGAACGCAGCAGTCATCGGGACAAGGA
TAAGGAGCGCGATCGTAACCGCGACGGCGGCGACCGAGATCGACACCGCA
GGGAAGGTGGCGATCGAGATCGGGAGCGGGAACGTGAGCGCGAACGCGAC
AGATCTCGTCGGAGTCGTTCGCGTGATGAGCGCGGTGGAGGTGGTCGCTA
CGGCGATCGTGACAAGGATCGCCGCTCGCGAGATCGACGCGGCGGCAGCA
AGTCGTTGCAAGTGGATCGCTCGCGGGACAAGCGTCGACGCAGTCGTTCC
CGCGATCAGCAGCGCAAACGGCTGAGTCCGATCCGTGAACGCAAGCGCAG
CCATTCCCGCTCGAGGGACAGAAATAGCCGCCGTCGGGGAACCAATTCTC
CGCGACGCCGCTCACCACCGAATGGAGCTGATCGCACCACGCCCACCGAA
CTCAGTCCCGAGGAGCGGGACGCCCGCACCGTTTTCTGCATCCAGTTGTC
GCAGCGAGTGCGAGCCCGTGACCTGGAGGAGTTTTTCTCCAGCGTCGGCA
AGGTGCGCGACGTGCGTCTAATCACATGCAACAAGACGAAACGCTTCAAG
GGCATTGCCTACATTGAGTTCGATGATCCTGAGTCCGTGGCACTGGCCCT
GGGCCTCTCTGGCCAGCGGCTGCTC

BO08883.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG11266-PA 1785 CG11266-RA 1..909 17..925 4545 100 Plus
CG11266-PB 1785 CG11266-RB 1..909 17..925 4545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
Caper-RB 2457 CG11266-RB 245..1153 17..925 4545 100 Plus
Caper-RA 2128 CG11266-RA 181..1089 17..925 4545 100 Plus
Caper-RL 2484 CG11266-RL 591..1445 71..925 4275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7035636..7036035 225..624 2000 100 Plus
2L 23513712 2L 7036185..7036485 625..925 1505 100 Plus
2L 23513712 2L 7035407..7035562 71..226 780 100 Plus
2L 23513712 2L 7032965..7033018 17..70 270 100 Plus
Blast to na_te.dros performed 2015-02-13 07:55:17
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 668..714 120..74 118 72.3 Minus

BO08883.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:05 Download gff for BO08883.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11266-PB 1..909 17..925 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:14 Download gff for BO08883.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11266-PB 1..909 17..925 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:51:28 Download gff for BO08883.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11266-RA 175..1089 12..925 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:02:10 Download gff for BO08883.5prime
Subject Subject Range Query Range Percent Splice Strand
Caper-RA 175..1089 12..925 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:02:10 Download gff for BO08883.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7032959..7033018 12..70 96 -> Plus
2L 7035407..7035561 71..225 100 -> Plus
2L 7035637..7036035 226..624 100 -> Plus
2L 7036185..7036485 625..925 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:51:28 Download gff for BO08883.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7032959..7033018 12..70 96 -> Plus
arm_2L 7035407..7035561 71..225 100 -> Plus
arm_2L 7035637..7036035 226..624 100 -> Plus
arm_2L 7036185..7036485 625..925 100   Plus

BO08883.complete Sequence

1816 bp (1816 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631301

> BO08883.complete
GAAGTTATCAGTCGACATGGCCGAGGACTTTGATGTGGAGGCGATGCTCG
AGGCGCCGTACATGAAAAACAATGTCAGTGCGGGCAGCGGTGGAAGTGGT
GGACGCAAGCGCAGCGGCAGCAGTCCAGGCGGCGGCGGTGGACACGATGA
CGACTACGCCGAGAATGGTCCGCGGAACGGCAGCGGCGGCGGAAGCTCAC
ACAAAAAGCAAAGCAAACGATCCCGGAGTAGAAGCGGCTCGCGTGATGGC
AAATCTCGACGAGATCGCGGCAATGAACGCAGCAGTCATCGGGACAAGGA
TAAGGAGCGCGATCGTAACCGCGACGGCGGCGACCGAGATCGACACCGCA
GGGAAGGTGGCGATCGAGATCGGGAGCGGGAACGTGAGCGCGAACGCGAC
AGATCTCGTCGGAGTCGTTCGCGTGATGAGCGCGGTGGAGGTGGTCGCTA
CGGCGATCGTGACAAGGATCGCCGCTCGCGAGATCGACGCGGCGGCAGCA
AGTCGTTGCAAGTGGATCGCTCGCGGGACAAGCGTCGACGCAGTCGTTCC
CGCGATCAGCAGCGCAAACGGCTGAGTCCGATCCGTGAACGCAAGCGCAG
CCATTCCCGCTCGAGGGACAGAAATAGCCGCCGTCGGGGAACCAATTCTC
CGCGACGCCGCTCACCACCGAATGGAGCTGATCGCACCACGCCCACCGAA
CTCAGTCCCGAGGAGCGGGACGCCCGCACCGTTTTCTGCATCCAGTTGTC
GCAGCGAGTGCGAGCCCGTGACCTGGAGGAGTTTTTCTCCAGCGTCGGCA
AGGTGCGCGACGTGCGTCTAATCACATGCAACAAGACGAAACGCTTCAAG
GGCATTGCCTACATTGAGTTCGATGATCCTGAGTCCGTGGCACTGGCCCT
GGGCCTCTCTGGCCAGCGGCTGCTCGGTGTACCCATCATGGTGCAGCACA
CGCAGGCTGAGAAGAATCGTCTCCAGAATGCAGCGCCGGCATTCCAACCG
AAGAGTCACACGGGTCCCATGCGCCTCTACGTGGGATCACTGCACTTCAA
CATTACCGAGGACATGCTGCGGGGCATATTCGAGCCCTTTGGCAAGATCG
ATGCCATTCAACTGATCATGGATACGGAGACGGGCCGATCCAAGGGCTAC
GGCTTTATCACGTACCACAATGCTGACGATGCCAAAAAGGCTCTGGAACA
GCTGAACGGCTTTGAACTGGCCGGTCGGCTCATGAAAGTGGGCAATGTGA
CGGAGCGACTGGACATGAATACCACCTCGCTGGACACCGACGAGATGGAT
CGCACGGGCATCGATCTGGGTGCCACGGGACGTCTGCAGCTGATGTTCAA
GCTGGCGGAAGGAGCCGGTTTGGCAGTGCCCCAGGCGGCTGCCAATGCGC
TGCTGGCTACAGCACCTCAACCGGCGCCGTTGCAGCAGCAGGAGGTGGCA
CCATCGATAGCCACACAGTGCTTCATACTGTCCAATATGTTTGATCCGCG
TACCGAGACAAATCCTACCTGGGACGTTGAGATCCGCGACGATGTGCTGG
AGGAGTGCGCCAAACACGGCGGGGTGCTGCACATCCACGTGGACACCATT
TCGCACACGGGAACCGTGTATGTCAAGTGCCCGAGCACAACGACCGCAGT
GCTGGCAGTGAATGCACTGCATGGACGCTGGTTTGCCGGTCGAGTGATCA
CGGCGGCCTACGTGCCCGTGATCAACTATCACACCATGTTTCCGGACTCC
ATCAACGCCGTCGATCTGGTGACGTCCACGCGCAAGAACACCGACGATGC
AAGCTTTCTAGACCAT

BO08883.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
Caper-RB 1785 CG11266-PB 1..1782 17..1798 8910 100 Plus
Caper-RA 1785 CG11266-PA 1..1782 17..1798 8910 100 Plus
Caper-RL 69 CG11266-PL 1..55 17..71 275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
Caper-RB 2457 CG11266-RB 245..2026 17..1798 8910 100 Plus
Caper-RA 2128 CG11266-RA 181..1962 17..1798 8910 100 Plus
Caper-RL 2484 CG11266-RL 591..2318 71..1798 8640 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:08:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7036811..7037447 1162..1798 3185 100 Plus
2L 23513712 2L 7036185..7036722 625..1162 2690 100 Plus
2L 23513712 2L 7035636..7036035 225..624 2000 100 Plus
2L 23513712 2L 7035407..7035562 71..226 780 100 Plus
2L 23513712 2L 7032965..7033018 17..70 270 100 Plus
Blast to na_te.dros performed 2014-11-27 07:08:24
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 668..714 120..74 118 72.3 Minus

BO08883.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:02 Download gff for BO08883.complete
Subject Subject Range Query Range Percent Splice Strand
CG11266-RB 1..1785 17..1801 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:18:13 Download gff for BO08883.complete
Subject Subject Range Query Range Percent Splice Strand
CG11266-RD 183..241 12..69 96 <- Plus
CG11266-RD 669..2407 70..1805 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:33 Download gff for BO08883.complete
Subject Subject Range Query Range Percent Splice Strand
CG11266-RA 181..1962 17..1800 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:02 Download gff for BO08883.complete
Subject Subject Range Query Range Percent Splice Strand
CG11266-RD 183..241 12..69 96 <- Plus
CG11266-RD 669..2407 70..1805 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:02 Download gff for BO08883.complete
Subject Subject Range Query Range Percent Splice Strand
Caper-RA 181..1962 17..1800 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:02 Download gff for BO08883.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7032965..7033018 17..70 100 -> Plus
2L 7035407..7035561 71..225 100 -> Plus
2L 7035637..7036035 226..624 100 -> Plus
2L 7036185..7036722 625..1162 100 -> Plus
2L 7036812..7037447 1163..1800 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:33 Download gff for BO08883.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7032965..7033018 17..70 100 -> Plus
arm_2L 7035407..7035561 71..225 100 -> Plus
arm_2L 7035637..7036035 226..624 100 -> Plus
arm_2L 7036185..7036722 625..1162 100 -> Plus
arm_2L 7036812..7037447 1163..1800 99   Plus

BO08883.pep Sequence

Translation from 16 to 1816

> BO08883.pep
MAEDFDVEAMLEAPYMKNNVSAGSGGSGGRKRSGSSPGGGGGHDDDYAEN
GPRNGSGGGSSHKKQSKRSRSRSGSRDGKSRRDRGNERSSHRDKDKERDR
NRDGGDRDRHRREGGDRDRERERERERDRSRRSRSRDERGGGGRYGDRDK
DRRSRDRRGGSKSLQVDRSRDKRRRSRSRDQQRKRLSPIRERKRSHSRSR
DRNSRRRGTNSPRRRSPPNGADRTTPTELSPEERDARTVFCIQLSQRVRA
RDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVALALGLSGQ
RLLGVPIMVQHTQAEKNRLQNAAPAFQPKSHTGPMRLYVGSLHFNITEDM
LRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFE
LAGRLMKVGNVTERLDMNTTSLDTDEMDRTGIDLGATGRLQLMFKLAEGA
GLAVPQAAANALLATAPQPAPLQQQEVAPSIATQCFILSNMFDPRTETNP
TWDVEIRDDVLEECAKHGGVLHIHVDTISHTGTVYVKCPSTTTAVLAVNA
LHGRWFAGRVITAAYVPVINYHTMFPDSINAVDLVTSTRKNTDDASFLDH

BO08883.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
Caper-PB 594 CG11266-PB 1..594 1..594 3088 100 Plus
Caper-PA 594 CG11266-PA 1..594 1..594 3088 100 Plus
RnpS1-PA 374 CG16788-PA 23..302 30..318 265 30 Plus
SF1-PC 323 CG5836-PC 27..197 56..235 244 37.5 Plus
SF1-PB 347 CG5836-PB 27..197 56..235 244 37.5 Plus
SF1-PC 323 CG5836-PC 25..217 35..233 225 33.7 Plus