Clone Sequence Records
BO08883.3prime Sequence
908 bp (843 high quality bases) assembled on 2006-01-10
> BO08883.3prime
ATGGTCTAGAAAGCTTGCATCGTCGGTGTTCTTGCGCGTGGACGTCACCA
GATCGACGGCGTTGATGGAGTCCGGAAACATGGTGTGATAGTTGATCACG
GGCACGTAGGCCGCCGTGATCACTCGACCGGCAAACCAGCGTCCATGCAG
TGCATTCACTGCCAGCACTGCGGTCGTTGTGCTCGGGCACTTGACATACA
CGGTTCCCGTGTGCGAAATGGTGTCCACGTGGATGTGCAGCACCCCGCCG
TGTTTGGCGCACTCCTCCAGCACATCGTCGCGGATCTCAACGTCCCAGGT
AGGATTTGTCTCGGTACGCGGATCAAACATATTGGACAGTATGAAGCACT
GTGTGGCTATCGATGGTGCCACCTCCTGCTGCTGCAACGGCGCCGGTTGA
GGTGCTGTAGCCAGCAGCGCATTGGCAGCCGCCTGGGGCACTGCCAAACC
GGCTCCTTCCGCCAGCTTGAACATCAGCTGCAGACGTCCCGTGGCACCCA
GATCGATGCCCGTGCGATCCATCTCGTCGGTGTCCAGCGAGGTGGTATTC
ATGTCCAGTCGCTCCGTCACATTGCCCACTTTCATGAGCCGACCGGCCAG
TTCAAAGCCGTTCAGCTGTTCCAGAGCCTTTTTGGCATCGTCAGCATTGT
GGTACGTGATAAAGCCGTAGCCCTTGGATCGGCCCGTCTCCGTATCCATG
ATCAGTTGAATGGCATCGATCTTGCCAAAGGGCTCGAATATGCCCCGCAG
CATGTCCTCGGTAATGTTGAAGTGCAGTGATCCCACGTAGAGGCGCATGG
GACCCGTGTGACTCTTCGGTTGGAATGCCGGCGCTGCATTCTGGAGACGA
TTCTTCTCAGCCTGCGTGTGCTGCACCATGATGGGTACACCGAGCAGCCG
CTGGCCAG
BO08883.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11266-PA | 1785 | CG11266-RA | 893..1782 | 908..19 | 4450 | 100 | Minus |
CG11266-PB | 1785 | CG11266-RB | 893..1782 | 908..19 | 4450 | 100 | Minus |
CG11266-PF | 864 | CG11266-RF | 1..861 | 879..19 | 4305 | 100 | Minus |
CG11266-PG | 864 | CG11266-RG | 1..861 | 879..19 | 4305 | 100 | Minus |
CG11266-PD | 864 | CG11266-RD | 1..861 | 879..19 | 4305 | 100 | Minus |
CG11266-PE | 864 | CG11266-RE | 1..861 | 879..19 | 4305 | 100 | Minus |
CG11266-PC | 864 | CG11266-RC | 1..861 | 879..19 | 4305 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:00:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Caper-RL | 2484 | CG11266-RL | 1429..2318 | 908..19 | 4450 | 100 | Minus |
Caper-RK | 3145 | CG11266-RK | 1825..2714 | 908..19 | 4450 | 100 | Minus |
Caper-RJ | 2453 | CG11266-RJ | 1398..2287 | 908..19 | 4450 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:00:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7036811..7037447 | 655..19 | 3185 | 100 | Minus |
2L | 23513712 | 2L | 7036469..7036722 | 908..655 | 1270 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 11:00:15 has no hits.
BO08883.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:04 Download gff for
BO08883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11266-PB | 893..1785 | 16..908 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:13 Download gff for
BO08883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11266-PB | 893..1785 | 16..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:31:58 Download gff for
BO08883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11266-RE | 1398..2293 | 12..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:41:42 Download gff for
BO08883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Caper-RJ | 1398..2293 | 12..908 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:41:42 Download gff for
BO08883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7036469..7036722 | 655..908 | 100 | -> | Minus |
2L | 7036812..7037453 | 12..654 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:31:58 Download gff for
BO08883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7036469..7036722 | 655..908 | 100 | -> | Minus |
arm_2L | 7036812..7037453 | 12..654 | 99 | | Minus |
BO08883.5prime Sequence
925 bp (845 high quality bases) assembled on 2006-01-09
> BO08883.5prime
GAAGTTATCAGTCGACATGGCCGAGGACTTTGATGTGGAGGCGATGCTCG
AGGCGCCGTACATGAAAAACAATGTCAGTGCGGGCAGCGGTGGAAGTGGT
GGACGCAAGCGCAGCGGCAGCAGTCCAGGCGGCGGCGGTGGACACGATGA
CGACTACGCCGAGAATGGTCCGCGGAACGGCAGCGGCGGCGGAAGCTCAC
ACAAAAAGCAAAGCAAACGATCCCGGAGTAGAAGCGGCTCGCGTGATGGC
AAATCTCGACGAGATCGCGGCAATGAACGCAGCAGTCATCGGGACAAGGA
TAAGGAGCGCGATCGTAACCGCGACGGCGGCGACCGAGATCGACACCGCA
GGGAAGGTGGCGATCGAGATCGGGAGCGGGAACGTGAGCGCGAACGCGAC
AGATCTCGTCGGAGTCGTTCGCGTGATGAGCGCGGTGGAGGTGGTCGCTA
CGGCGATCGTGACAAGGATCGCCGCTCGCGAGATCGACGCGGCGGCAGCA
AGTCGTTGCAAGTGGATCGCTCGCGGGACAAGCGTCGACGCAGTCGTTCC
CGCGATCAGCAGCGCAAACGGCTGAGTCCGATCCGTGAACGCAAGCGCAG
CCATTCCCGCTCGAGGGACAGAAATAGCCGCCGTCGGGGAACCAATTCTC
CGCGACGCCGCTCACCACCGAATGGAGCTGATCGCACCACGCCCACCGAA
CTCAGTCCCGAGGAGCGGGACGCCCGCACCGTTTTCTGCATCCAGTTGTC
GCAGCGAGTGCGAGCCCGTGACCTGGAGGAGTTTTTCTCCAGCGTCGGCA
AGGTGCGCGACGTGCGTCTAATCACATGCAACAAGACGAAACGCTTCAAG
GGCATTGCCTACATTGAGTTCGATGATCCTGAGTCCGTGGCACTGGCCCT
GGGCCTCTCTGGCCAGCGGCTGCTC
BO08883.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11266-PA | 1785 | CG11266-RA | 1..909 | 17..925 | 4545 | 100 | Plus |
CG11266-PB | 1785 | CG11266-RB | 1..909 | 17..925 | 4545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:55:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Caper-RB | 2457 | CG11266-RB | 245..1153 | 17..925 | 4545 | 100 | Plus |
Caper-RA | 2128 | CG11266-RA | 181..1089 | 17..925 | 4545 | 100 | Plus |
Caper-RL | 2484 | CG11266-RL | 591..1445 | 71..925 | 4275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:55:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7035636..7036035 | 225..624 | 2000 | 100 | Plus |
2L | 23513712 | 2L | 7036185..7036485 | 625..925 | 1505 | 100 | Plus |
2L | 23513712 | 2L | 7035407..7035562 | 71..226 | 780 | 100 | Plus |
2L | 23513712 | 2L | 7032965..7033018 | 17..70 | 270 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 07:55:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 668..714 | 120..74 | 118 | 72.3 | Minus |
BO08883.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:05 Download gff for
BO08883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11266-PB | 1..909 | 17..925 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:14 Download gff for
BO08883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11266-PB | 1..909 | 17..925 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:51:28 Download gff for
BO08883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11266-RA | 175..1089 | 12..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:02:10 Download gff for
BO08883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Caper-RA | 175..1089 | 12..925 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:02:10 Download gff for
BO08883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7032959..7033018 | 12..70 | 96 | -> | Plus |
2L | 7035407..7035561 | 71..225 | 100 | -> | Plus |
2L | 7035637..7036035 | 226..624 | 100 | -> | Plus |
2L | 7036185..7036485 | 625..925 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:51:28 Download gff for
BO08883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7032959..7033018 | 12..70 | 96 | -> | Plus |
arm_2L | 7035407..7035561 | 71..225 | 100 | -> | Plus |
arm_2L | 7035637..7036035 | 226..624 | 100 | -> | Plus |
arm_2L | 7036185..7036485 | 625..925 | 100 | | Plus |
BO08883.complete Sequence
1816 bp (1816 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631301
> BO08883.complete
GAAGTTATCAGTCGACATGGCCGAGGACTTTGATGTGGAGGCGATGCTCG
AGGCGCCGTACATGAAAAACAATGTCAGTGCGGGCAGCGGTGGAAGTGGT
GGACGCAAGCGCAGCGGCAGCAGTCCAGGCGGCGGCGGTGGACACGATGA
CGACTACGCCGAGAATGGTCCGCGGAACGGCAGCGGCGGCGGAAGCTCAC
ACAAAAAGCAAAGCAAACGATCCCGGAGTAGAAGCGGCTCGCGTGATGGC
AAATCTCGACGAGATCGCGGCAATGAACGCAGCAGTCATCGGGACAAGGA
TAAGGAGCGCGATCGTAACCGCGACGGCGGCGACCGAGATCGACACCGCA
GGGAAGGTGGCGATCGAGATCGGGAGCGGGAACGTGAGCGCGAACGCGAC
AGATCTCGTCGGAGTCGTTCGCGTGATGAGCGCGGTGGAGGTGGTCGCTA
CGGCGATCGTGACAAGGATCGCCGCTCGCGAGATCGACGCGGCGGCAGCA
AGTCGTTGCAAGTGGATCGCTCGCGGGACAAGCGTCGACGCAGTCGTTCC
CGCGATCAGCAGCGCAAACGGCTGAGTCCGATCCGTGAACGCAAGCGCAG
CCATTCCCGCTCGAGGGACAGAAATAGCCGCCGTCGGGGAACCAATTCTC
CGCGACGCCGCTCACCACCGAATGGAGCTGATCGCACCACGCCCACCGAA
CTCAGTCCCGAGGAGCGGGACGCCCGCACCGTTTTCTGCATCCAGTTGTC
GCAGCGAGTGCGAGCCCGTGACCTGGAGGAGTTTTTCTCCAGCGTCGGCA
AGGTGCGCGACGTGCGTCTAATCACATGCAACAAGACGAAACGCTTCAAG
GGCATTGCCTACATTGAGTTCGATGATCCTGAGTCCGTGGCACTGGCCCT
GGGCCTCTCTGGCCAGCGGCTGCTCGGTGTACCCATCATGGTGCAGCACA
CGCAGGCTGAGAAGAATCGTCTCCAGAATGCAGCGCCGGCATTCCAACCG
AAGAGTCACACGGGTCCCATGCGCCTCTACGTGGGATCACTGCACTTCAA
CATTACCGAGGACATGCTGCGGGGCATATTCGAGCCCTTTGGCAAGATCG
ATGCCATTCAACTGATCATGGATACGGAGACGGGCCGATCCAAGGGCTAC
GGCTTTATCACGTACCACAATGCTGACGATGCCAAAAAGGCTCTGGAACA
GCTGAACGGCTTTGAACTGGCCGGTCGGCTCATGAAAGTGGGCAATGTGA
CGGAGCGACTGGACATGAATACCACCTCGCTGGACACCGACGAGATGGAT
CGCACGGGCATCGATCTGGGTGCCACGGGACGTCTGCAGCTGATGTTCAA
GCTGGCGGAAGGAGCCGGTTTGGCAGTGCCCCAGGCGGCTGCCAATGCGC
TGCTGGCTACAGCACCTCAACCGGCGCCGTTGCAGCAGCAGGAGGTGGCA
CCATCGATAGCCACACAGTGCTTCATACTGTCCAATATGTTTGATCCGCG
TACCGAGACAAATCCTACCTGGGACGTTGAGATCCGCGACGATGTGCTGG
AGGAGTGCGCCAAACACGGCGGGGTGCTGCACATCCACGTGGACACCATT
TCGCACACGGGAACCGTGTATGTCAAGTGCCCGAGCACAACGACCGCAGT
GCTGGCAGTGAATGCACTGCATGGACGCTGGTTTGCCGGTCGAGTGATCA
CGGCGGCCTACGTGCCCGTGATCAACTATCACACCATGTTTCCGGACTCC
ATCAACGCCGTCGATCTGGTGACGTCCACGCGCAAGAACACCGACGATGC
AAGCTTTCTAGACCAT
BO08883.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:08:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Caper-RB | 1785 | CG11266-PB | 1..1782 | 17..1798 | 8910 | 100 | Plus |
Caper-RA | 1785 | CG11266-PA | 1..1782 | 17..1798 | 8910 | 100 | Plus |
Caper-RL | 69 | CG11266-PL | 1..55 | 17..71 | 275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:08:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Caper-RB | 2457 | CG11266-RB | 245..2026 | 17..1798 | 8910 | 100 | Plus |
Caper-RA | 2128 | CG11266-RA | 181..1962 | 17..1798 | 8910 | 100 | Plus |
Caper-RL | 2484 | CG11266-RL | 591..2318 | 71..1798 | 8640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:08:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7036811..7037447 | 1162..1798 | 3185 | 100 | Plus |
2L | 23513712 | 2L | 7036185..7036722 | 625..1162 | 2690 | 100 | Plus |
2L | 23513712 | 2L | 7035636..7036035 | 225..624 | 2000 | 100 | Plus |
2L | 23513712 | 2L | 7035407..7035562 | 71..226 | 780 | 100 | Plus |
2L | 23513712 | 2L | 7032965..7033018 | 17..70 | 270 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 07:08:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 668..714 | 120..74 | 118 | 72.3 | Minus |
BO08883.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:02 Download gff for
BO08883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11266-RB | 1..1785 | 17..1801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:18:13 Download gff for
BO08883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11266-RD | 183..241 | 12..69 | 96 | <- | Plus |
CG11266-RD | 669..2407 | 70..1805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:33 Download gff for
BO08883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11266-RA | 181..1962 | 17..1800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:02 Download gff for
BO08883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11266-RD | 183..241 | 12..69 | 96 | <- | Plus |
CG11266-RD | 669..2407 | 70..1805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:02 Download gff for
BO08883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Caper-RA | 181..1962 | 17..1800 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:02 Download gff for
BO08883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7032965..7033018 | 17..70 | 100 | -> | Plus |
2L | 7035407..7035561 | 71..225 | 100 | -> | Plus |
2L | 7035637..7036035 | 226..624 | 100 | -> | Plus |
2L | 7036185..7036722 | 625..1162 | 100 | -> | Plus |
2L | 7036812..7037447 | 1163..1800 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:33 Download gff for
BO08883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7032965..7033018 | 17..70 | 100 | -> | Plus |
arm_2L | 7035407..7035561 | 71..225 | 100 | -> | Plus |
arm_2L | 7035637..7036035 | 226..624 | 100 | -> | Plus |
arm_2L | 7036185..7036722 | 625..1162 | 100 | -> | Plus |
arm_2L | 7036812..7037447 | 1163..1800 | 99 | | Plus |
BO08883.pep Sequence
Translation from 16 to 1816
> BO08883.pep
MAEDFDVEAMLEAPYMKNNVSAGSGGSGGRKRSGSSPGGGGGHDDDYAEN
GPRNGSGGGSSHKKQSKRSRSRSGSRDGKSRRDRGNERSSHRDKDKERDR
NRDGGDRDRHRREGGDRDRERERERERDRSRRSRSRDERGGGGRYGDRDK
DRRSRDRRGGSKSLQVDRSRDKRRRSRSRDQQRKRLSPIRERKRSHSRSR
DRNSRRRGTNSPRRRSPPNGADRTTPTELSPEERDARTVFCIQLSQRVRA
RDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVALALGLSGQ
RLLGVPIMVQHTQAEKNRLQNAAPAFQPKSHTGPMRLYVGSLHFNITEDM
LRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFE
LAGRLMKVGNVTERLDMNTTSLDTDEMDRTGIDLGATGRLQLMFKLAEGA
GLAVPQAAANALLATAPQPAPLQQQEVAPSIATQCFILSNMFDPRTETNP
TWDVEIRDDVLEECAKHGGVLHIHVDTISHTGTVYVKCPSTTTAVLAVNA
LHGRWFAGRVITAAYVPVINYHTMFPDSINAVDLVTSTRKNTDDASFLDH
BO08883.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:59:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Caper-PB | 594 | CG11266-PB | 1..594 | 1..594 | 3088 | 100 | Plus |
Caper-PA | 594 | CG11266-PA | 1..594 | 1..594 | 3088 | 100 | Plus |
RnpS1-PA | 374 | CG16788-PA | 23..302 | 30..318 | 265 | 30 | Plus |
SF1-PC | 323 | CG5836-PC | 27..197 | 56..235 | 244 | 37.5 | Plus |
SF1-PB | 347 | CG5836-PB | 27..197 | 56..235 | 244 | 37.5 | Plus |
SF1-PC | 323 | CG5836-PC | 25..217 | 35..233 | 225 | 33.7 | Plus |