Clone Sequence Records
BO08884.3prime Sequence
943 bp (824 high quality bases) assembled on 2006-01-10
> BO08884.3prime
ATGGTCTAGAAAGCTTGCGGCTAACAGCACCGTGAGGGAGTCCAGAAAGC
GTGTGAGGTCGCTCTGCCGCAGCTGCACCACCGCTGGCTCGAAAAAGTCC
TGCAATAGAGCGACTCCACTCTTTTGCGCCGCCTGCTCGAAGGCCTTGCC
AAAGAAGTTTCGCGGAGAGTCTTCCCTTACCGGGACAATGCCTACCAGCA
AGCACATGCCCTCCGAAGCGTTCAGGGGACAACTTGCGATCAACGGCAAG
TCCGAAGCCTGCCTGGCTCTACTCGTGGCCACATGTCCGCGCAAAAGAAA
GCGAGCCAACAGTCCAAGGGCATAGGGGTATGAGAAGAACGCGTGTTCCT
CCTGCAGAACGTAGTAGAAAAAGGAGCCCGCTGAATGAACTTGGCGTGCC
TCCAAGCTGCTCTGCACCTGCCGAAAGACAGCAGCATGCAAAAGCTTCGC
CTGGTCGATGCCTGCAGACAGCAGCTGCTTGTGCTGACGACTCAAAGCAT
CCGAGGCCTCCAGAAAGCAATCCTCCGGAGTCTTGTGCTTCTTCACGGAC
TCCATGATGGCGAGCAGGGCATAAACGTAGTCCGCCGCAGCATATCTGCT
GCGGTAGCCGTAGCTCAGCGTAAAGGTGCCGTAAACTATGTCCGCTATGT
CGTACTTCTCCGCCAGGCGCTCCACCATCGAGAAGAACTCCTTGCGCAAC
ACCAAATCCATGGCTCCGTACGTTTGGCGGGCGTGCACCAAGGGAAGTCC
CATCTCGAGCAGCAGCTCGTGTAATCTCTTCTCTCCGCGCAGTGTCCACA
GCTTCAGCTGGCATGAGGAGTAGCGGGAATACCTCATGGATTCCGTGACG
GGCCAGTGGCGGTACAGACCAGATGCAAATCATTCTCGAAGGTTATCTTG
GGAGCACTCATCGTGTTCTGATCATTCGTTTTGTTCGTCAGTC
BO08884.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3658-PA | 1728 | CDC45L-RA | 878..1725 | 866..19 | 4240 | 100 | Minus |
| CG3658-PA | 1728 | CDC45L-RA | 800..877 | 943..866 | 340 | 97.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:18:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CDC45L-RA | 2214 | CG3658-RA | 1029..1954 | 943..19 | 4575 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:18:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1028551..1029366 | 19..834 | 4080 | 100 | Plus |
| X | 23542271 | X | 1029415..1029528 | 831..943 | 490 | 97.4 | Plus |
Blast to na_te.dros performed on 2015-02-01 07:18:31 has no hits.
BO08884.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:06 Download gff for
BO08884.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3658-PA | 800..1728 | 15..943 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:16 Download gff for
BO08884.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3658-PA | 800..1728 | 15..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:13:05 Download gff for
BO08884.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CDC45L-RA | 1054..1982 | 15..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:42:47 Download gff for
BO08884.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CDC45L-RA | 1029..1957 | 15..943 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:42:47 Download gff for
BO08884.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1028548..1029364 | 15..832 | 99 | <- | Plus |
| X | 1029417..1029528 | 833..943 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:13:05 Download gff for
BO08884.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 922581..923397 | 15..832 | 99 | <- | Plus |
| arm_X | 923450..923561 | 833..943 | 97 | | Plus |
BO08884.5prime Sequence
925 bp (820 high quality bases) assembled on 2006-01-09
> BO08884.5prime
GAAGTTATCAGTCGACATGTTTGTCCAGGATCTGCGCAACGACTTTTACC
GCCAGCTGGTTGGCAAGCGCATCTTGATCGTGGTCAACTACGACATCGAT
GCCATCTGCGCCAGTCGCATCCTGCAGGCCTTGTTCAAGTACGATCACAT
GCTGTACACCGTGGTGCCCATAATGGGCGTTACGGGTCTGAAGCGGGCCT
ATGGAGAGCACCAGGGCGACGTTAAGTACGTGGTGTTGGTGAACTGCGGC
GGCTGTGTAGATATTGTGGAGCTCCTGCAGCCGTCGGACGACGTGACCTT
CTTCATATGCGATTCACATCGCCCGTTGGATGTGTGTAACATCTACAGCG
ATCGGCAGGTGTGCATCTTGGGGGATGCCTCCTTGGAGGAGAATATTCCA
GCGTTCGAGACAATTTTCTATGACTCTGAAGGTGAAGACGAGGATGAGGA
CGAGTCCTCTGACACGGAACAGCAGCACGACGACAGTGGTGCCGGGGAAT
CGGACCAGGAGGATCAGGCGCCAAGGAGCCGTAAGCTCAGTCGCCTGGAG
CGGCACGAGCAACGCATCCTGAAGCAGCGAGCCCGCCGACAGTGGGAGTC
TGAGCGCGACAGGATTATGTTCGAGTACACGCAGTTCAGCTACTACGGCA
GGTCCGCCGCTTTGATGGTTTTTGAGTTGGCCTGGAAGCTCTCAAAAGAC
AACATGGACCTGCTCTGGTGGGCCATTGTGGGCATCACGGAGCAGCTGCT
GCTGGGCAAGATCGAGAGTGGAGCGTATACTTTGGAGCTGGAGCAAATCC
AGTCGCATGTGTCCCGACTGACGACCAAAACGAATGATCAGAACACGATG
AGTGCCTCCAAGATAACCCTTCGAGAAATGATTGCATCTGGTCTTGTACC
GCCACTGGCCCGTCACGGAATCCAT
BO08884.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3658-PA | 1728 | CDC45L-RA | 1..852 | 17..868 | 4235 | 99.8 | Plus |
| CG3658-PA | 1728 | CDC45L-RA | 865..908 | 882..925 | 220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 10:08:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CDC45L-RA | 2214 | CG3658-RA | 229..1137 | 16..925 | 4465 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 10:08:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1029420..1030328 | 925..16 | 4425 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-09 10:08:18 has no hits.
BO08884.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:06 Download gff for
BO08884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3658-PA | 1..908 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:18 Download gff for
BO08884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3658-PA | 1..908 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:27:11 Download gff for
BO08884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CDC45L-RA | 250..1162 | 8..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:56:01 Download gff for
BO08884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CDC45L-RA | 225..1137 | 8..925 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:56:01 Download gff for
BO08884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1029420..1030332 | 8..925 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:27:11 Download gff for
BO08884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 923453..924365 | 8..925 | 99 | | Minus |
BO08884.complete Sequence
1759 bp (1759 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631302
> BO08884.complete
GAAGTTATCAGTCGACATGTTTGTCCAGGATCTGCGCAACGACTTTTACC
GCCAGCTGGTTGGCAAGCGCATCTTGATCGTGGTCAACTACGACATCGAT
GCCATCTGCGCCAGTCGCATCCTGCAGGCCTTGTTCAAGTACGATCACAT
GCTGTACACCGTGGTGCCCATAATGGGCGTTACGGGTCTGAAGCGGGCCT
ATGGAGAGCACCAGGGCGACGTTAAGTACGTGGTGTTGGTGAACTGCGGC
GGCTGTGTAGATATTGTGGAGCTCCTGCAGCCGTCGGACGACGTGACCTT
CTTCATATGCGATTCACATCGCCCGTTGGATGTGTGTAACATCTACAGCG
ATCGGCAGGTGTGCATCTTGGGGGATGCCTCCTTGGAGGAGAATATTCCA
GCGTTCGAGACAATTTTCTATGACTCTGAAGGTGAAGACGAGGATGAGGA
CGAGTCCTCTGACACGGAACAGCAGCACGACGACAGTGGTGCCGGGGAAT
CGGACCAGGAGGATCAGGCGCCAAGGAGCCGTAAGCTCAGTCGCCTGGAG
CGGCACGAGCAACGCATCCTGAAGCAGCGAGCCCGCCGACAGTGGGAGTC
TGAGCGCGACAGGATTATGTTCGAGTACACGCAGTTCAGCTACTACGGCA
GGTCCGCCGCTTTGATGGTTTTTGAGTTGGCCTGGAAGCTCTCAAAAGAC
AACATGGACCTGCTCTGGTGGGCCATTGTGGGCATCACGGAGCAGCTGCT
GCTGGGCAAGATCGAGAGTGGAGCGTATACTTTGGAGCTGGAGCAAATCC
AGTCGCATGTGTCCCGACTGACGAACAAAACGAATGATCAGAACACGATG
AGTGCCTCCAAGATAACCTTCGAGAATGATTTGCATCTGGTCTTGTACCG
CCACTGGCCCGTCACGGAATCCATGAGGTATTCCCGCTACTCCTCATGCC
AGCTGAAGCTGTGGACACTGCGCGGAGAGAAGAGATTACACGAGCTGCTG
CTCGAGATGGGACTTCCCTTGGTGCACGCCCGCCAAACGTACGGAGCCAT
GGATTTGGTGTTGCGCAAGGAGTTCTTCTCGATGGTGGAGCGCCTGGCGG
AGAAGTACGACATAGCGGACATAGTTTACGGCACCTTTACGCTGAGCTAC
GGCTACCGCAGCAGATATGCTGCGGCGGACTACGTTTATGCCCTGCTCGC
CATCATGGAGTCCGTGAAGAAGCACAAGACTCCGGAGGATTGCTTTCTGG
AGGCCTCGGATGCTTTGAGTCGTCAGCACAAGCAGCTGCTGTCTGCAGGC
ATCGACCAGGCGAAGCTTTTGCATGCTGCTGTCTTTCGGCAGGTGCAGAG
CAGCTTGGAGGCACGCCAAGTTCATTCAGCGGGCTCCTTTTTCTACTACG
TTCTGCAGGAGGAACACGCGTTCTTCTCATACCCCTATGCCCTTGGACTG
TTGGCTCGCTTTCTTTTGCGCGGACATGTGGCCACGAGTAGAGCCAGGCA
GGCTTCGGACTTGCCGTTGATCGCAAGTTGTCCCCTGAACGCTTCGGAGG
GCATGTGCTTGCTGGTAGGCATTGTCCCGGTAAGGGAAGACTCTCCGCGA
AACTTCTTTGGCAAGGCCTTCGAGCAGGCGGCGCAAAAGAGTGGAGTCGC
TCTATTGCAGGACTTTTTCGAGCCAGCGGTGGTGCAGCTGCGGCAGAGCG
ACCTCACACGCTTTCTGGACTCCCTCACGGTGCTGTTAGCCGCAAGCTTT
CTAGACCAT
BO08884.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:08:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CDC45L-RA | 1728 | CG3658-PA | 1..1725 | 17..1741 | 8625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:08:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CDC45L-RA | 2214 | CG3658-RA | 229..1954 | 16..1741 | 8630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:08:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1029415..1030328 | 929..16 | 4570 | 100 | Minus |
| X | 23542271 | X | 1028551..1029366 | 1741..926 | 4080 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:08:39 has no hits.
BO08884.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:03 Download gff for
BO08884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CDC45L-RA | 1..1728 | 17..1745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:18:14 Download gff for
BO08884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CDC45L-RA | 242..1974 | 8..1745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:14 Download gff for
BO08884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CDC45L-RA | 261..1979 | 23..1743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:04 Download gff for
BO08884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CDC45L-RA | 242..1974 | 8..1745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:44 Download gff for
BO08884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CDC45L-RA | 236..1954 | 23..1743 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:44 Download gff for
BO08884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1028549..1029364 | 928..1743 | 99 | <- | Minus |
| X | 1029417..1030321 | 23..927 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:14 Download gff for
BO08884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 922582..923397 | 928..1743 | 99 | <- | Minus |
| arm_X | 923450..924354 | 23..927 | 100 | | Minus |
BO08884.pep Sequence
Translation from 16 to 1759
> BO08884.pep
MFVQDLRNDFYRQLVGKRILIVVNYDIDAICASRILQALFKYDHMLYTVV
PIMGVTGLKRAYGEHQGDVKYVVLVNCGGCVDIVELLQPSDDVTFFICDS
HRPLDVCNIYSDRQVCILGDASLEENIPAFETIFYDSEGEDEDEDESSDT
EQQHDDSGAGESDQEDQAPRSRKLSRLERHEQRILKQRARRQWESERDRI
MFEYTQFSYYGRSAALMVFELAWKLSKDNMDLLWWAIVGITEQLLLGKIE
SGAYTLELEQIQSHVSRLTNKTNDQNTMSASKITFENDLHLVLYRHWPVT
ESMRYSRYSSCQLKLWTLRGEKRLHELLLEMGLPLVHARQTYGAMDLVLR
KEFFSMVERLAEKYDIADIVYGTFTLSYGYRSRYAAADYVYALLAIMESV
KKHKTPEDCFLEASDALSRQHKQLLSAGIDQAKLLHAAVFRQVQSSLEAR
QVHSAGSFFYYVLQEEHAFFSYPYALGLLARFLLRGHVATSRARQASDLP
LIASCPLNASEGMCLLVGIVPVREDSPRNFFGKAFEQAAQKSGVALLQDF
FEPAVVQLRQSDLTRFLDSLTVLLAASFLDH
BO08884.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:59:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CDC45L-PA | 575 | CG3658-PA | 1..575 | 1..575 | 2961 | 100 | Plus |
