Clone BO08885 Report

Search the DGRC for BO08885

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:88
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptCG6398-RA
Protein status:BO08885.pep: validated full length
Sequenced Size:904

Clone Sequence Records

BO08885.3prime Sequence

827 bp (808 high quality bases) assembled on 2006-01-09

> BO08885.3prime
ATGGTCTAGAAAGCTTGCGTAGTTGTAGGGTCCGTACTGCGAGCCATGAT
AGTAAGGTCCTGGGTAGATCTGCGGCTGGGCGTAGTTGGCATAAGGGGGA
TAGGGTGGCTGCTTCTGCGAGTAAACTGGCATCAGGTACTGCAGGTTCAG
CTGCTCCTCCTTCTCCCGCTCGTTGCGCAGGCAAACGGCCGCGCCGGAGA
GCAGAATGGACGCCAGGAGACAGGTTCCGATTCCTGCCCAGGCCACGATG
TACGACCAGTCGTAGGCGATCTTCGTGTTGTCGCGCAGGACCGTGTTCCA
CTGCTGGAAGTAATCCTCGCCCACGACCTTCTCCTTCTCAAAGAACTCGA
CGGTGTGCCAGAGTCCCATGGCGCCGGCGGCCAGGAGACAGGTGACTAGC
AGCAGTATCGAGGTGGCTGTGATGGCGCCCGACGACCGCTTCCAGCAGCC
GGATAATCCGGTCCAGAACGCACAGAAGATGGTCACAAAGCTGATGATGA
ACAGAGCGATGCAGGAGCGGGCCAAATGGAGACGCGATGTGGCGTCCTCG
TTGGCGATCTTCTCGTCCTCCGCCTGCGGGAAGTAGTCGATGTTCGAGCA
GTGTGTCTCGATCGGTGACAAATAGGTGGGCACCGCTGAAACTGGCGGCC
GCTCCTTGGGATAGCAGATCCGGAACAAGCCTCGTGTCCTCGTGTAGTAA
TAGTACTTCACGTTCATGTTGTGCAACAACGACTCCGCATCCGAGTGCTT
GGCGGCAAAGGACTGTATCTGGTTGCGCCAGACATCGTAGTGCAGCCAAT
TATCCGTGGAGAAGGCGATCGCCAGCA

BO08885.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG6398-PA 873 CG6398-RA 62..870 827..19 4045 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6398-RB 1972 CG6398-RB 555..1363 827..19 4045 100 Minus
CG6398-RA 1860 CG6398-RA 555..1363 827..19 4045 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:36:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17840354..17840697 633..290 1720 100 Minus
X 23542271 X 17840761..17840927 292..126 835 100 Minus
X 23542271 X 17840157..17840289 765..633 665 100 Minus
X 23542271 X 17840986..17841096 129..19 555 100 Minus
X 23542271 X 17831382..17831446 827..763 325 100 Minus
Blast to na_te.dros performed on 2015-02-08 14:36:29 has no hits.

BO08885.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:07 Download gff for BO08885.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6398-PA 63..873 18..826 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:19 Download gff for BO08885.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6398-PA 63..873 18..826 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:57:37 Download gff for BO08885.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6398-RA 556..1363 19..826 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:37:52 Download gff for BO08885.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6398-RA 556..1363 19..826 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:37:52 Download gff for BO08885.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17831383..17831446 763..826 100 -> Minus
X 17840160..17840289 633..762 100 -> Minus
X 17840355..17840695 292..632 100 -> Minus
X 17840762..17840927 126..291 100 -> Minus
X 17840990..17841096 19..125 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:57:37 Download gff for BO08885.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17725416..17725479 763..826 100 -> Minus
arm_X 17734193..17734322 633..762 100 -> Minus
arm_X 17734388..17734728 292..632 100 -> Minus
arm_X 17734795..17734960 126..291 100 -> Minus
arm_X 17735023..17735129 19..125 100   Minus

BO08885.5prime Sequence

902 bp (841 high quality bases) assembled on 2006-01-09

> BO08885.5prime
GAAGTTATCAGTCGACATGCCCTGCTCGGCCGTAACCCTATCTATAGCGA
CGATCTGCGCGATCATCGCCACCGCCCTGCTGGCGATCGCCTTCTCCACG
GATAATTGGCTGCACTACGATGTCTGGCGCAACCAGATACAGTCCTTTGC
CGCCAAGCACTCGGATGCGGAGTCGTTGTTGCACAACATGAACGTGAAGT
ACTATTACTACACGAGGACACGAGGCTTGTTCCGGATCTGCTATCCCAAG
GAGCGGCCGCCAGTTTCAGCGGTGCCCACCTATTTGTCACCGATCGAGAC
ACACTGCTCGAACATCGACTACTTCCCGCAGGCGGAGGACGAGAAGATCG
CCAACGAGGACGCCACATCGCGTCTCCATTTGGCCCGCTCCTGCATCGCT
CTGTTCATCATCAGCTTTGTGACCATCTTCTGTGCGTTCTGGACCGGATT
ATCCGGCTGCTGGAAGCGGTCGTCGGGCGCCATCACAGCCACCTCGATAC
TGCTGCTAGTCACCTGTCTCCTGGCCGCCGGCGCCATGGGACTCTGGCAC
ACCGTCGAGTTCTTTGAGAAGGAGAAGGTCGTGGGCGAGGATTACTTCCA
GCAGTGGAACACGGTCCTGCGCGACAACACGAAGATCGCCTACGACTGGT
CGTACATCGTGGCCTGGGCAGGAATCGGAACCTGTCTCCTGGCGTCCATT
CTGCTCTCCGGCGCGGCCGTTTGCCTGCGCAACGAGCGGGAGAAGGAGGA
GCAGCTGAACCTGCAGTACCTGATGCCAGTTTACTCGCAGAAGCAGCCAC
CCTATCCCCCTTATGCCAACTACGCCCAGCCGCAGATCTACCCAGGACCT
TACTATCATGGCTCGCAGTACGGACCCCTACACTACGCAAGCTTTCTAGA
CC

BO08885.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG6398-PA 873 CG6398-RA 1..861 17..877 4305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:05:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG6398-RB 1972 CG6398-RB 493..1354 16..877 4310 100 Plus
CG6398-RA 1860 CG6398-RA 493..1354 16..877 4310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17840354..17840697 272..615 1720 100 Plus
X 23542271 X 17840761..17840927 613..779 835 100 Plus
X 23542271 X 17840157..17840289 140..272 665 100 Plus
X 23542271 X 17831320..17831446 16..142 635 100 Plus
X 23542271 X 17840986..17841087 776..877 510 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:05:58 has no hits.

BO08885.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:08 Download gff for BO08885.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6398-PA 1..873 17..887 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:20 Download gff for BO08885.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6398-PA 1..873 17..887 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:28:19 Download gff for BO08885.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6398-RA 487..1363 9..886 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:41:59 Download gff for BO08885.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6398-RA 487..1363 9..886 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:41:59 Download gff for BO08885.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17840990..17841096 780..886 98   Plus
X 17840762..17840927 614..779 100 -> Plus
X 17831314..17831446 9..142 97 -> Plus
X 17840160..17840289 143..272 100 -> Plus
X 17840355..17840695 273..613 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:28:19 Download gff for BO08885.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17725347..17725479 9..142 97 -> Plus
arm_X 17734193..17734322 143..272 100 -> Plus
arm_X 17734388..17734728 273..613 100 -> Plus
arm_X 17734795..17734960 614..779 100 -> Plus
arm_X 17735023..17735129 780..886 98   Plus

BO08885.complete Sequence

904 bp (904 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ631303

> BO08885.complete
GAAGTTATCAGTCGACATGCCCTGCTCGGCCGTAACCCTATCTATAGCGA
CGATCTGCGCGATCATCGCCACCGCCCTGCTGGCGATCGCCTTCTCCACG
GATAATTGGCTGCACTACGATGTCTGGCGCAACCAGATACAGTCCTTTGC
CGCCAAGCACTCGGATGCGGAGTCGTTGTTGCACAACATGAACGTGAAGT
ACTATTACTACACGAGGACACGAGGCTTGTTCCGGATCTGCTATCCCAAG
GAGCGGCCGCCAGTTTCAGCGGTGCCCACCTATTTGTCACCGATCGAGAC
ACACTGCTCGAACATCGACTACTTCCCGCAGGCGGAGGACGAGAAGATCG
CCAACGAGGACGCCACATCGCGTCTCCATTTGGCCCGCTCCTGCATCGCT
CTGTTCATCATCAGCTTTGTGACCATCTTCTGTGCGTTCTGGACCGGATT
ATCCGGCTGCTGGAAGCGGTCGTCGGGCGCCATCACAGCCACCTCGATAC
TGCTGCTAGTCACCTGTCTCCTGGCCGCCGGCGCCATGGGACTCTGGCAC
ACCGTCGAGTTCTTTGAGAAGGAGAAGGTCGTGGGCGAGGATTACTTCCA
GCAGTGGAACACGGTCCTGCGCGACAACACGAAGATCGCCTACGACTGGT
CGTACATCGTGGCCTGGGCAGGAATCGGAACCTGTCTCCTGGCGTCCATT
CTGCTCTCCGGCGCGGCCGTTTGCCTGCGCAACGAGCGGGAGAAGGAGGA
GCAGCTGAACCTGCAGTACCTGATGCCAGTTTACTCGCAGAAGCAGCCAC
CCTATCCCCCTTATGCCAACTACGCCCAGCCGCAGATCTACCCAGGACCT
TACTATCATGGCTCGCAGTACGGACCCTACAACTACGCAAGCTTTCTAGA
CCAT

BO08885.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:01:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG6398-RB 873 CG6398-PB 1..870 17..886 4350 100 Plus
CG6398-RA 873 CG6398-PA 1..870 17..886 4350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG6398-RB 1972 CG6398-RB 493..1363 16..886 4355 100 Plus
CG6398-RA 1860 CG6398-RA 493..1363 16..886 4355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17840354..17840697 272..615 1720 100 Plus
X 23542271 X 17840761..17840927 613..779 835 100 Plus
X 23542271 X 17840157..17840289 140..272 665 100 Plus
X 23542271 X 17831320..17831446 16..142 635 100 Plus
X 23542271 X 17840986..17841096 776..886 555 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:01:57 has no hits.

BO08885.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:42 Download gff for BO08885.complete
Subject Subject Range Query Range Percent Splice Strand
CG6398-RA 1..873 17..887 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:54 Download gff for BO08885.complete
Subject Subject Range Query Range Percent Splice Strand
CG6398-RA 475..1351 9..886 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:57 Download gff for BO08885.complete
Subject Subject Range Query Range Percent Splice Strand
CG6398-RA 494..1363 17..888 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:43 Download gff for BO08885.complete
Subject Subject Range Query Range Percent Splice Strand
CG6398-RA 475..1351 9..886 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:47 Download gff for BO08885.complete
Subject Subject Range Query Range Percent Splice Strand
CG6398-RA 494..1363 17..888 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:08:47 Download gff for BO08885.complete
Subject Subject Range Query Range Percent Splice Strand
X 17831321..17831446 17..142 100 -> Plus
X 17840160..17840289 143..272 100 -> Plus
X 17840355..17840695 273..613 100 -> Plus
X 17840762..17840927 614..779 100 -> Plus
X 17840990..17841096 780..888 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:57 Download gff for BO08885.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17725354..17725479 17..142 100 -> Plus
arm_X 17734193..17734322 143..272 100 -> Plus
arm_X 17734388..17734728 273..613 100 -> Plus
arm_X 17734795..17734960 614..779 100 -> Plus
arm_X 17735023..17735129 780..888 98   Plus

BO08885.pep Sequence

Translation from 16 to 904

> BO08885.pep
MPCSAVTLSIATICAIIATALLAIAFSTDNWLHYDVWRNQIQSFAAKHSD
AESLLHNMNVKYYYYTRTRGLFRICYPKERPPVSAVPTYLSPIETHCSNI
DYFPQAEDEKIANEDATSRLHLARSCIALFIISFVTIFCAFWTGLSGCWK
RSSGAITATSILLLVTCLLAAGAMGLWHTVEFFEKEKVVGEDYFQQWNTV
LRDNTKIAYDWSYIVAWAGIGTCLLASILLSGAAVCLRNEREKEEQLNLQ
YLMPVYSQKQPPYPPYANYAQPQIYPGPYYHGSQYGPYNYASFLDH

BO08885.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6398-PB 290 CG6398-PB 1..290 1..290 1567 100 Plus
CG6398-PA 290 CG6398-PA 1..290 1..290 1567 100 Plus