Clone Sequence Records
BO08885.3prime Sequence
827 bp (808 high quality bases) assembled on 2006-01-09
> BO08885.3prime
ATGGTCTAGAAAGCTTGCGTAGTTGTAGGGTCCGTACTGCGAGCCATGAT
AGTAAGGTCCTGGGTAGATCTGCGGCTGGGCGTAGTTGGCATAAGGGGGA
TAGGGTGGCTGCTTCTGCGAGTAAACTGGCATCAGGTACTGCAGGTTCAG
CTGCTCCTCCTTCTCCCGCTCGTTGCGCAGGCAAACGGCCGCGCCGGAGA
GCAGAATGGACGCCAGGAGACAGGTTCCGATTCCTGCCCAGGCCACGATG
TACGACCAGTCGTAGGCGATCTTCGTGTTGTCGCGCAGGACCGTGTTCCA
CTGCTGGAAGTAATCCTCGCCCACGACCTTCTCCTTCTCAAAGAACTCGA
CGGTGTGCCAGAGTCCCATGGCGCCGGCGGCCAGGAGACAGGTGACTAGC
AGCAGTATCGAGGTGGCTGTGATGGCGCCCGACGACCGCTTCCAGCAGCC
GGATAATCCGGTCCAGAACGCACAGAAGATGGTCACAAAGCTGATGATGA
ACAGAGCGATGCAGGAGCGGGCCAAATGGAGACGCGATGTGGCGTCCTCG
TTGGCGATCTTCTCGTCCTCCGCCTGCGGGAAGTAGTCGATGTTCGAGCA
GTGTGTCTCGATCGGTGACAAATAGGTGGGCACCGCTGAAACTGGCGGCC
GCTCCTTGGGATAGCAGATCCGGAACAAGCCTCGTGTCCTCGTGTAGTAA
TAGTACTTCACGTTCATGTTGTGCAACAACGACTCCGCATCCGAGTGCTT
GGCGGCAAAGGACTGTATCTGGTTGCGCCAGACATCGTAGTGCAGCCAAT
TATCCGTGGAGAAGGCGATCGCCAGCA
BO08885.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6398-PA | 873 | CG6398-RA | 62..870 | 827..19 | 4045 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:36:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6398-RB | 1972 | CG6398-RB | 555..1363 | 827..19 | 4045 | 100 | Minus |
CG6398-RA | 1860 | CG6398-RA | 555..1363 | 827..19 | 4045 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:36:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17840354..17840697 | 633..290 | 1720 | 100 | Minus |
X | 23542271 | X | 17840761..17840927 | 292..126 | 835 | 100 | Minus |
X | 23542271 | X | 17840157..17840289 | 765..633 | 665 | 100 | Minus |
X | 23542271 | X | 17840986..17841096 | 129..19 | 555 | 100 | Minus |
X | 23542271 | X | 17831382..17831446 | 827..763 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 14:36:29 has no hits.
BO08885.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:07 Download gff for
BO08885.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6398-PA | 63..873 | 18..826 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:19 Download gff for
BO08885.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6398-PA | 63..873 | 18..826 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:57:37 Download gff for
BO08885.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6398-RA | 556..1363 | 19..826 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:37:52 Download gff for
BO08885.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6398-RA | 556..1363 | 19..826 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:37:52 Download gff for
BO08885.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17831383..17831446 | 763..826 | 100 | -> | Minus |
X | 17840160..17840289 | 633..762 | 100 | -> | Minus |
X | 17840355..17840695 | 292..632 | 100 | -> | Minus |
X | 17840762..17840927 | 126..291 | 100 | -> | Minus |
X | 17840990..17841096 | 19..125 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:57:37 Download gff for
BO08885.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17725416..17725479 | 763..826 | 100 | -> | Minus |
arm_X | 17734193..17734322 | 633..762 | 100 | -> | Minus |
arm_X | 17734388..17734728 | 292..632 | 100 | -> | Minus |
arm_X | 17734795..17734960 | 126..291 | 100 | -> | Minus |
arm_X | 17735023..17735129 | 19..125 | 100 | | Minus |
BO08885.5prime Sequence
902 bp (841 high quality bases) assembled on 2006-01-09
> BO08885.5prime
GAAGTTATCAGTCGACATGCCCTGCTCGGCCGTAACCCTATCTATAGCGA
CGATCTGCGCGATCATCGCCACCGCCCTGCTGGCGATCGCCTTCTCCACG
GATAATTGGCTGCACTACGATGTCTGGCGCAACCAGATACAGTCCTTTGC
CGCCAAGCACTCGGATGCGGAGTCGTTGTTGCACAACATGAACGTGAAGT
ACTATTACTACACGAGGACACGAGGCTTGTTCCGGATCTGCTATCCCAAG
GAGCGGCCGCCAGTTTCAGCGGTGCCCACCTATTTGTCACCGATCGAGAC
ACACTGCTCGAACATCGACTACTTCCCGCAGGCGGAGGACGAGAAGATCG
CCAACGAGGACGCCACATCGCGTCTCCATTTGGCCCGCTCCTGCATCGCT
CTGTTCATCATCAGCTTTGTGACCATCTTCTGTGCGTTCTGGACCGGATT
ATCCGGCTGCTGGAAGCGGTCGTCGGGCGCCATCACAGCCACCTCGATAC
TGCTGCTAGTCACCTGTCTCCTGGCCGCCGGCGCCATGGGACTCTGGCAC
ACCGTCGAGTTCTTTGAGAAGGAGAAGGTCGTGGGCGAGGATTACTTCCA
GCAGTGGAACACGGTCCTGCGCGACAACACGAAGATCGCCTACGACTGGT
CGTACATCGTGGCCTGGGCAGGAATCGGAACCTGTCTCCTGGCGTCCATT
CTGCTCTCCGGCGCGGCCGTTTGCCTGCGCAACGAGCGGGAGAAGGAGGA
GCAGCTGAACCTGCAGTACCTGATGCCAGTTTACTCGCAGAAGCAGCCAC
CCTATCCCCCTTATGCCAACTACGCCCAGCCGCAGATCTACCCAGGACCT
TACTATCATGGCTCGCAGTACGGACCCCTACACTACGCAAGCTTTCTAGA
CC
BO08885.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6398-PA | 873 | CG6398-RA | 1..861 | 17..877 | 4305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:05:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6398-RB | 1972 | CG6398-RB | 493..1354 | 16..877 | 4310 | 100 | Plus |
CG6398-RA | 1860 | CG6398-RA | 493..1354 | 16..877 | 4310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:05:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17840354..17840697 | 272..615 | 1720 | 100 | Plus |
X | 23542271 | X | 17840761..17840927 | 613..779 | 835 | 100 | Plus |
X | 23542271 | X | 17840157..17840289 | 140..272 | 665 | 100 | Plus |
X | 23542271 | X | 17831320..17831446 | 16..142 | 635 | 100 | Plus |
X | 23542271 | X | 17840986..17841087 | 776..877 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:05:58 has no hits.
BO08885.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:08 Download gff for
BO08885.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6398-PA | 1..873 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:20 Download gff for
BO08885.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6398-PA | 1..873 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:28:19 Download gff for
BO08885.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6398-RA | 487..1363 | 9..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:41:59 Download gff for
BO08885.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6398-RA | 487..1363 | 9..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:41:59 Download gff for
BO08885.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17840990..17841096 | 780..886 | 98 | | Plus |
X | 17840762..17840927 | 614..779 | 100 | -> | Plus |
X | 17831314..17831446 | 9..142 | 97 | -> | Plus |
X | 17840160..17840289 | 143..272 | 100 | -> | Plus |
X | 17840355..17840695 | 273..613 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:28:19 Download gff for
BO08885.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17725347..17725479 | 9..142 | 97 | -> | Plus |
arm_X | 17734193..17734322 | 143..272 | 100 | -> | Plus |
arm_X | 17734388..17734728 | 273..613 | 100 | -> | Plus |
arm_X | 17734795..17734960 | 614..779 | 100 | -> | Plus |
arm_X | 17735023..17735129 | 780..886 | 98 | | Plus |
BO08885.complete Sequence
904 bp (904 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631303
> BO08885.complete
GAAGTTATCAGTCGACATGCCCTGCTCGGCCGTAACCCTATCTATAGCGA
CGATCTGCGCGATCATCGCCACCGCCCTGCTGGCGATCGCCTTCTCCACG
GATAATTGGCTGCACTACGATGTCTGGCGCAACCAGATACAGTCCTTTGC
CGCCAAGCACTCGGATGCGGAGTCGTTGTTGCACAACATGAACGTGAAGT
ACTATTACTACACGAGGACACGAGGCTTGTTCCGGATCTGCTATCCCAAG
GAGCGGCCGCCAGTTTCAGCGGTGCCCACCTATTTGTCACCGATCGAGAC
ACACTGCTCGAACATCGACTACTTCCCGCAGGCGGAGGACGAGAAGATCG
CCAACGAGGACGCCACATCGCGTCTCCATTTGGCCCGCTCCTGCATCGCT
CTGTTCATCATCAGCTTTGTGACCATCTTCTGTGCGTTCTGGACCGGATT
ATCCGGCTGCTGGAAGCGGTCGTCGGGCGCCATCACAGCCACCTCGATAC
TGCTGCTAGTCACCTGTCTCCTGGCCGCCGGCGCCATGGGACTCTGGCAC
ACCGTCGAGTTCTTTGAGAAGGAGAAGGTCGTGGGCGAGGATTACTTCCA
GCAGTGGAACACGGTCCTGCGCGACAACACGAAGATCGCCTACGACTGGT
CGTACATCGTGGCCTGGGCAGGAATCGGAACCTGTCTCCTGGCGTCCATT
CTGCTCTCCGGCGCGGCCGTTTGCCTGCGCAACGAGCGGGAGAAGGAGGA
GCAGCTGAACCTGCAGTACCTGATGCCAGTTTACTCGCAGAAGCAGCCAC
CCTATCCCCCTTATGCCAACTACGCCCAGCCGCAGATCTACCCAGGACCT
TACTATCATGGCTCGCAGTACGGACCCTACAACTACGCAAGCTTTCTAGA
CCAT
BO08885.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:01:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6398-RB | 873 | CG6398-PB | 1..870 | 17..886 | 4350 | 100 | Plus |
CG6398-RA | 873 | CG6398-PA | 1..870 | 17..886 | 4350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6398-RB | 1972 | CG6398-RB | 493..1363 | 16..886 | 4355 | 100 | Plus |
CG6398-RA | 1860 | CG6398-RA | 493..1363 | 16..886 | 4355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17840354..17840697 | 272..615 | 1720 | 100 | Plus |
X | 23542271 | X | 17840761..17840927 | 613..779 | 835 | 100 | Plus |
X | 23542271 | X | 17840157..17840289 | 140..272 | 665 | 100 | Plus |
X | 23542271 | X | 17831320..17831446 | 16..142 | 635 | 100 | Plus |
X | 23542271 | X | 17840986..17841096 | 776..886 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:01:57 has no hits.
BO08885.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:42 Download gff for
BO08885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6398-RA | 1..873 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:54 Download gff for
BO08885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6398-RA | 475..1351 | 9..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:57 Download gff for
BO08885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6398-RA | 494..1363 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:43 Download gff for
BO08885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6398-RA | 475..1351 | 9..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:47 Download gff for
BO08885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6398-RA | 494..1363 | 17..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:08:47 Download gff for
BO08885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17831321..17831446 | 17..142 | 100 | -> | Plus |
X | 17840160..17840289 | 143..272 | 100 | -> | Plus |
X | 17840355..17840695 | 273..613 | 100 | -> | Plus |
X | 17840762..17840927 | 614..779 | 100 | -> | Plus |
X | 17840990..17841096 | 780..888 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:57 Download gff for
BO08885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17725354..17725479 | 17..142 | 100 | -> | Plus |
arm_X | 17734193..17734322 | 143..272 | 100 | -> | Plus |
arm_X | 17734388..17734728 | 273..613 | 100 | -> | Plus |
arm_X | 17734795..17734960 | 614..779 | 100 | -> | Plus |
arm_X | 17735023..17735129 | 780..888 | 98 | | Plus |
BO08885.pep Sequence
Translation from 16 to 904
> BO08885.pep
MPCSAVTLSIATICAIIATALLAIAFSTDNWLHYDVWRNQIQSFAAKHSD
AESLLHNMNVKYYYYTRTRGLFRICYPKERPPVSAVPTYLSPIETHCSNI
DYFPQAEDEKIANEDATSRLHLARSCIALFIISFVTIFCAFWTGLSGCWK
RSSGAITATSILLLVTCLLAAGAMGLWHTVEFFEKEKVVGEDYFQQWNTV
LRDNTKIAYDWSYIVAWAGIGTCLLASILLSGAAVCLRNEREKEEQLNLQ
YLMPVYSQKQPPYPPYANYAQPQIYPGPYYHGSQYGPYNYASFLDH
BO08885.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6398-PB | 290 | CG6398-PB | 1..290 | 1..290 | 1567 | 100 | Plus |
CG6398-PA | 290 | CG6398-PA | 1..290 | 1..290 | 1567 | 100 | Plus |