Clone Sequence Records
BO08886.3prime Sequence
931 bp (779 high quality bases) assembled on 2006-01-09
> BO08886.3prime
ATGGTCTAGAAAGCTTGCGGAATCTGCTGTTGTCTTGTTTTTGAGCTGAC
GGTATAGCTGAACCATTTTGCTGCGCTCGGTTTCAAGCATTGACCTCGTA
GCCAAGGGCAGATCTTTCCGCTTGCCCTTCATCTGGGCCTTGGTGGGTGC
TTTGAAGGCGCTCTTAGATTGGGCAGCCAGCTTTAGTCGACTGCTGTCGT
CGTCCTCCGGCCCACGATTTGACTGACCCTGGTCGGGATTCAGCATGGAC
TTTAGAAGGAGATTGGCTTTGCGTCCTGGACGCGGCACGGTTTCACTTTT
TTCCGCTTTGCGCGGCAGGATTTTGAGGGAAGGTGGGGCATGGACGATCT
CACCAAATGCCACAGCATCCTGTTTGAATTCTGTTGGCCCGGCATTCTGC
TTCTCCTCGGTATCAACCTCTTGCTGGGCCTCCTTGTAGGCCCTCTTCAC
CAATTCGCGACTGGTCTTCGCATCCATGGGCTTGTGTACGACTTGAACCT
TTTTGCGACCCCTTTTGCCCGCCAGCCGTTGCTCCTTTTGCTTCTGCTTG
AGCAGCTCGTCGATCTCGTTTTTCGGCCTCTTTTGGACAGTAATCTCCCC
GGTTTTGGGGTTTCTGATCACGTTCACACCATACTTGGCCTCGTAGTGGG
CTTCCCGTACGGATGCATTGGTCATGCGATTCACTCGGCGCAGATAATCC
TCGTCCGTTTCGTTGGCGAACTGCTTGATGTTACGCGTTTCCTTTGAGGA
GGAACTACTGCCAGGCTTGGATCCTGGAGAGGATTTGGGCTTATCCTCCC
GTCCAATTTCGCCCAATCTTAGCTTCTTGCCCGATTTGGTGGCGTTGGCA
AGCTGCTGAAACTGACGGAACTTAAAGGACACCTGCTGCTCATCCTTTTT
CACAGGCGGATTGTTTCGTACTTTGGAAAGT
BO08886.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8326-PA | 999 | CG8326-RA | 100..996 | 915..19 | 4485 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8326-RA | 1260 | CG8326-RA | 153..1065 | 931..19 | 4520 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17628359..17629271 | 19..931 | 4520 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:45:38 has no hits.
BO08886.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:09 Download gff for
BO08886.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8326-PA | 84..999 | 15..931 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:21 Download gff for
BO08886.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8326-PA | 84..999 | 15..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:02:07 Download gff for
BO08886.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8326-RA | 153..1068 | 15..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:08:14 Download gff for
BO08886.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8326-RA | 153..1068 | 15..931 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:08:14 Download gff for
BO08886.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17628356..17629271 | 15..931 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:02:07 Download gff for
BO08886.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17522389..17523304 | 15..931 | 99 | | Plus |
BO08886.5prime Sequence
886 bp (798 high quality bases) assembled on 2006-01-09
> BO08886.5prime
GAAGTTATCAGTCGACATGGCTCGGAAACGAAAGATTCCCGTGCGCAAGC
ACCACGGCGTCCGTGATCCCCTCAAGCAGCTGGAACAGAAGGAGAAGAAA
CTTTCCAAAGTAACGAACAATCCGCCTGTGAAAAAGGATGAGCAGCAGGT
GTCCTTTAAGTTCCGTCAGTTTCAGCAGCTTGCCAACGCCACCAAATCGG
GCAAGAAGCTAAGATTGGGCGAAATTGGACGGGAGGATAAGCCCAAATCC
TCTCCAGGATCCAAGCCTGGCAGTAGTTCCTCCTCAAAGGAAACGCGTAA
CATCAAGCAGTTCGCCAACGAAACGGACGAGGATTATCTGCGCCGAGTGA
ATCGCATGACCAATGCATCCGTACGGGAAGCCCACTACGAGGCCAAGTAT
GGTGTGAACGTGATCAGAAACCCCAAAACCGGGGAGATTACTGTCCAAAA
GAGGCCGAAAAACGAGATCGACGAGCTGCTCAAGCAGAAGCAAAAGGAGC
AACGGCTGGCGGGCAAAAGGGGTCGCAAAAAGGTTCAAGTCGTACACAAG
CCCATGGATGCGAAGACCAGTCGCGAATTGGTGAAGAGGGCCTACAAGGA
GGCCCAGCAAGAGGTTGATACCGAGGAGAAGCAGAATGCCGGGCCAACAG
AATTCAAACAGGATGCTGTGGCATTTGGTGAGATCGTCCATGCCCCACCT
TCCCTCAAAATCCTGCCGCGCAAAGCGGAAAANAGTGAAACCGTGCCGCG
TCCAGGACGCAAAGCCAATCTCCTTCTAAAGTCCATGCTGAATCCCGACC
AGGGTCAGTCAAATCGTGGGCCGGAGGACGACGACAGCAGTCGACTAAAG
CTGGCTGCCCAATCTAAGAGCGCCTTTCAAGCACCC
BO08886.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8326-PA | 999 | CG8326-RA | 1..860 | 17..876 | 4281 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:26:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8326-RA | 1260 | CG8326-RA | 70..939 | 17..886 | 4309 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:26:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17628485..17629271 | 886..100 | 3894 | 99.6 | Minus |
| X | 23542271 | X | 17629341..17629423 | 99..17 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 01:26:33 has no hits.
BO08886.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:10 Download gff for
BO08886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8326-PA | 1..870 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:23 Download gff for
BO08886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8326-PA | 1..870 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:41:00 Download gff for
BO08886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8326-RA | 70..939 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:29:30 Download gff for
BO08886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8326-RA | 70..939 | 17..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:29:30 Download gff for
BO08886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17628485..17629271 | 100..886 | 99 | <- | Minus |
| X | 17629341..17629423 | 17..99 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:41:00 Download gff for
BO08886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17522518..17523304 | 100..886 | 99 | <- | Minus |
| arm_X | 17523374..17523456 | 17..99 | 100 | | Minus |
BO08886.complete Sequence
1030 bp (1030 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631304
> BO08886.complete
GAAGTTATCAGTCGACATGGCTCGGAAACGAAAGATTCCCGTGCGCAAGC
ACCACGGCGTCCGTGATCCCCTCAAGCAGCTGGAACAGAAGGAGAAGAAA
CTTTCCAAAGTAACGAACAATCCGCCTGTGAAAAAGGATGAGCAGCAGGT
GTCCTTTAAGTTCCGTCAGTTTCAGCAGCTTGCCAACGCCACCAAATCGG
GCAAGAAGCTAAGATTGGGCGAAATTGGACGGGAGGATAAGCCCAAATCC
TCTCCAGGATCCAAGCCTGGCAGTAGTTCCTCCTCAAAGGAAACGCGTAA
CATCAAGCAGTTCGCCAACGAAACGGACGAGGATTATCTGCGCCGAGTGA
ATCGCATGACCAATGCATCCGTACGGGAAGCCCACTACGAGGCCAAGTAT
GGTGTGAACGTGATCAGAAACCCCAAAACCGGGGAGATTACTGTCCAAAA
GAGGCCGAAAAACGAGATCGACGAGCTGCTCAAGCAGAAGCAAAAGGAGC
AACGGCTGGCGGGCAAAAGGGGTCGCAAAAAGGTTCAAGTCGTACACAAG
CCCATGGATGCGAAGACCAGTCGCGAATTGGTGAAGAGGGCCTACAAGGA
GGCCCAGCAAGAGGTTGATACCGAGGAGAAGCAGAATGCCGGGCCAACAG
AATTCAAACAGGATGCTGTGGCATTTGGTGAGATCGTCCATGCCCCACCT
TCCCTCAAAATCCTGCCGCGCAAAGCGGAAAAAAGTGAAACCGTGCCGCG
TCCAGGACGCAAAGCCAATCTCCTTCTAAAGTCCATGCTGAATCCCGACC
AGGGTCAGTCAAATCGTGGGCCGGAGGACGACGACAGCAGTCGACTAAAG
CTGGCTGCCCAATCTAAGAGCGCCTTCAAAGCACCCACCAAGGCCCAGAT
GAAGGGCAAGCGGAAAGATCTGCCCTTGGCTACGAGGTCAATGCTTGAAA
CCGAGCGCAGCAAAATGGTTCAGCTATACCGTCAGCTCAAAAACAAGACA
ACAGCAGATTCCGCAAGCTTTCTAGACCAT
BO08886.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:01:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8326-RA | 999 | CG8326-PA | 1..996 | 17..1012 | 4980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:01:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8326-RA | 1260 | CG8326-RA | 70..1065 | 17..1012 | 4980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:01:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17628359..17629271 | 1012..100 | 4565 | 100 | Minus |
| X | 23542271 | X | 17629341..17629423 | 99..17 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:01:02 has no hits.
BO08886.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:44 Download gff for
BO08886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8326-RA | 1..999 | 17..1016 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:56 Download gff for
BO08886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8326-RA | 54..1052 | 17..1016 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:43:57 Download gff for
BO08886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8326-RA | 70..1065 | 17..1014 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:44 Download gff for
BO08886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8326-RA | 54..1052 | 17..1016 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:48:40 Download gff for
BO08886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8326-RA | 70..1065 | 17..1014 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:48:40 Download gff for
BO08886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17628357..17629271 | 100..1014 | 99 | <- | Minus |
| X | 17629341..17629423 | 17..99 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:43:57 Download gff for
BO08886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17522390..17523304 | 100..1014 | 99 | <- | Minus |
| arm_X | 17523374..17523456 | 17..99 | 100 | | Minus |
BO08886.pep Sequence
Translation from 16 to 1030
> BO08886.pep
MARKRKIPVRKHHGVRDPLKQLEQKEKKLSKVTNNPPVKKDEQQVSFKFR
QFQQLANATKSGKKLRLGEIGREDKPKSSPGSKPGSSSSSKETRNIKQFA
NETDEDYLRRVNRMTNASVREAHYEAKYGVNVIRNPKTGEITVQKRPKNE
IDELLKQKQKEQRLAGKRGRKKVQVVHKPMDAKTSRELVKRAYKEAQQEV
DTEEKQNAGPTEFKQDAVAFGEIVHAPPSLKILPRKAEKSETVPRPGRKA
NLLLKSMLNPDQGQSNRGPEDDDSSRLKLAAQSKSAFKAPTKAQMKGKRK
DLPLATRSMLETERSKMVQLYRQLKNKTTADSASFLDH
BO08886.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8326-PA | 332 | CG8326-PA | 1..332 | 1..332 | 1679 | 100 | Plus |
