Clone BO08888 Report

Search the DGRC for BO08888

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:88
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptHsp22-RA
Protein status:BO08888.pep: validated full length
Sequenced Size:556

Clone Sequence Records

BO08888.3prime Sequence

554 bp (553 high quality bases) assembled on 2006-01-10

> BO08888.3prime
ATGGTCTAGAAAGCTTGCCTGACTGGCGGCTTTGTCATTTGGCTCCTCGG
CGGACTTCTTTGCCGGCTCGCCAGTCTGCTCGATGGTCACCTCACGCTCC
TTGAGTGTCTCCTGCACGCCTGGAGGATTGGGCACACTGATGGTCAGGAC
GCCGTCGCTGCTCAGCGTTGAGGTCACCTTGTCCGCCTCGTATCCTTCCG
GCAGGACGAAGCGGCGGAGGAAGTGCCTGGAGCTATAGCCACCTTGTTCG
GCCTCCTGCTGCTCTGATTTTCCCTCCACCAGGACAACGCTCTCGTCCAG
CACCTTGACCTTTAGCTCGCTGTAGTCCTTGACGTCCAGGGTGAGTTTGT
AGCCATCCTTGTTGACGGTGGCCGGCGGAGCGAACTCCTGCTCCTGCCAG
CGGGCAATCTGCTGCCAGTTCCTCGGTAGCGCCACACTCCAAACGGGCGG
CTCGTGGAAGAAGGCGTGAAAGGGCGAGGAGAGGCGTGGCATCCGTGCCA
TCTCCTCGGCCATGCGCCAAAACATCGGTAAGGAACGCATGTCGACTGAT
AACT

BO08888.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG4460-PA 525 Hsp22-RA 1..522 540..19 2610 100 Minus
CG4460-PB 525 Hsp22-RB 1..522 540..19 2610 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:31:12
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp67Bb-RB 1900 CG4456-RB 1187..1708 540..19 2610 100 Minus
Hsp22-RB 968 CG4460-RB 255..776 540..19 2610 100 Minus
Hsp22-RA 1900 CG4460-RA 1187..1708 540..19 2610 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:31:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9374251..9374772 540..19 2610 100 Minus
Blast to na_te.dros performed on 2015-02-08 14:31:08 has no hits.

BO08888.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:13 Download gff for BO08888.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4460-PB 1..525 18..540 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:27 Download gff for BO08888.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4460-PB 1..525 18..540 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:56:45 Download gff for BO08888.3prime
Subject Subject Range Query Range Percent Splice Strand
Hsp67Bb-RB 1187..1708 19..540 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:37:08 Download gff for BO08888.3prime
Subject Subject Range Query Range Percent Splice Strand
Hsp22-RA 1187..1708 19..540 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:37:08 Download gff for BO08888.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9374251..9374772 19..540 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:56:45 Download gff for BO08888.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9367351..9367872 19..540 100   Minus

BO08888.5prime Sequence

554 bp (553 high quality bases) assembled on 2006-01-09

> BO08888.5prime
GAAGTTATCAGTCGACATGCGTTCCTTACCGATGTTTTGGCGCATGGCCG
AGGAGATGGCACGGATGCCACGCCTCTCCTCGCCCTTTCACGCCTTCTTC
CACGAGCCGCCCGTTTGGAGTGTGGCGCTACCGAGGAACTGGCAGCAGAT
TGCCCGCTGGCAGGAGCAGGAGTTCGCTCCGCCGGCCACCGTCAACAAGG
ATGGCTACAAACTCACCCTGGACGTCAAGGACTACAGCGAGCTAAAGGTC
AAGGTGCTGGACGAGAGCGTTGTCCTGGTGGAGGGAAAATCAGAGCAGCA
GGAGGCCGAACAAGGTGGCTATAGCTCCAGGCACTTCCTCCGCCGCTTCG
TCCTGCCGGAAGGATACGAGGCGGACAAGGTGACCTCAACGCTGAGCAGC
GACGGCGTCCTGACCATCAGTGTGCCCAATCCTCCAGGCGTGCAGGAGAC
ACTCAAGGAGCGTGAGGTGACCATCGAGCAGACTGGCGAGCCGGCAAAGA
AGTCCGCCGAGGAGCCAAATGACAAAGCCGCCAGTCAGGCAAGCTTTCTA
GACC

BO08888.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4460-PA 525 Hsp22-RA 1..522 17..538 2610 100 Plus
CG4460-PB 525 Hsp22-RB 1..522 17..538 2610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:37:22
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp67Bb-RB 1900 CG4456-RB 1187..1708 17..538 2610 100 Plus
Hsp22-RB 968 CG4460-RB 255..776 17..538 2610 100 Plus
Hsp22-RA 1900 CG4460-RA 1187..1708 17..538 2610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:37:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9374251..9374772 17..538 2610 100 Plus
Blast to na_te.dros performed on 2015-02-12 23:37:21 has no hits.

BO08888.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:14 Download gff for BO08888.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4460-PB 1..525 17..539 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:28 Download gff for BO08888.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4460-PB 1..525 17..539 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 16:54:41 Download gff for BO08888.5prime
Subject Subject Range Query Range Percent Splice Strand
Hsp67Bb-RB 1187..1708 17..538 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:13:22 Download gff for BO08888.5prime
Subject Subject Range Query Range Percent Splice Strand
Hsp22-RA 1187..1708 17..538 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:13:22 Download gff for BO08888.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9374251..9374772 17..538 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 16:54:41 Download gff for BO08888.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9367351..9367872 17..538 100   Plus

BO08888.complete Sequence

556 bp (556 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ631305

> BO08888.complete
GAAGTTATCAGTCGACATGCGTTCCTTACCGATGTTTTGGCGCATGGCCG
AGGAGATGGCACGGATGCCACGCCTCTCCTCGCCCTTTCACGCCTTCTTC
CACGAGCCGCCCGTTTGGAGTGTGGCGCTACCGAGGAACTGGCAGCAGAT
TGCCCGCTGGCAGGAGCAGGAGTTCGCTCCGCCGGCCACCGTCAACAAGG
ATGGCTACAAACTCACCCTGGACGTCAAGGACTACAGCGAGCTAAAGGTC
AAGGTGCTGGACGAGAGCGTTGTCCTGGTGGAGGGAAAATCAGAGCAGCA
GGAGGCCGAACAAGGTGGCTATAGCTCCAGGCACTTCCTCCGCCGCTTCG
TCCTGCCGGAAGGATACGAGGCGGACAAGGTGACCTCAACGCTGAGCAGC
GACGGCGTCCTGACCATCAGTGTGCCCAATCCTCCAGGCGTGCAGGAGAC
ACTCAAGGAGCGTGAGGTGACCATCGAGCAGACTGGCGAGCCGGCAAAGA
AGTCCGCCGAGGAGCCAAATGACAAAGCCGCCAGTCAGGCAAGCTTTCTA
GACCAT

BO08888.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp22-RB 525 CG4460-PB 1..522 17..538 2610 100 Plus
Hsp22-RA 525 CG4460-PA 1..522 17..538 2610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp67Bb-RB 1900 CG4456-RB 1187..1708 17..538 2610 100 Plus
Hsp22-RB 968 CG4460-RB 255..776 17..538 2610 100 Plus
Hsp22-RA 1900 CG4460-RA 1187..1708 17..538 2610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:45:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9374251..9374772 17..538 2610 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:45:01 has no hits.

BO08888.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:14:05 Download gff for BO08888.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp22-RB 1..525 17..539 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:32:52 Download gff for BO08888.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp67Bb-RB 1187..1708 17..538 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:29 Download gff for BO08888.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp67Bb-RB 1187..1708 17..540 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:14:05 Download gff for BO08888.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp67Bb-RB 1187..1708 17..538 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:57 Download gff for BO08888.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp22-RA 1187..1708 17..540 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:51:57 Download gff for BO08888.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9374251..9374772 17..540 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:29 Download gff for BO08888.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9367351..9367872 17..540 99   Plus

BO08888.pep Sequence

Translation from 16 to 556

> BO08888.pep
MRSLPMFWRMAEEMARMPRLSSPFHAFFHEPPVWSVALPRNWQQIARWQE
QEFAPPATVNKDGYKLTLDVKDYSELKVKVLDESVVLVEGKSEQQEAEQG
GYSSRHFLRRFVLPEGYEADKVTSTLSSDGVLTISVPNPPGVQETLKERE
VTIEQTGEPAKKSAEEPNDKAASQASFLDH

BO08888.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:17
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp22-PB 174 CG4460-PB 1..174 1..174 906 100 Plus
Hsp22-PA 174 CG4460-PA 1..174 1..174 906 100 Plus
Hsp23-PB 186 CG4463-PB 1..180 1..174 287 39.7 Plus
Hsp23-PA 186 CG4463-PA 1..180 1..174 287 39.7 Plus
Hsp26-PB 208 CG4183-PB 68..182 43..157 251 44.4 Plus