Clone Sequence Records
BO08888.3prime Sequence
554 bp (553 high quality bases) assembled on 2006-01-10
> BO08888.3prime
ATGGTCTAGAAAGCTTGCCTGACTGGCGGCTTTGTCATTTGGCTCCTCGG
CGGACTTCTTTGCCGGCTCGCCAGTCTGCTCGATGGTCACCTCACGCTCC
TTGAGTGTCTCCTGCACGCCTGGAGGATTGGGCACACTGATGGTCAGGAC
GCCGTCGCTGCTCAGCGTTGAGGTCACCTTGTCCGCCTCGTATCCTTCCG
GCAGGACGAAGCGGCGGAGGAAGTGCCTGGAGCTATAGCCACCTTGTTCG
GCCTCCTGCTGCTCTGATTTTCCCTCCACCAGGACAACGCTCTCGTCCAG
CACCTTGACCTTTAGCTCGCTGTAGTCCTTGACGTCCAGGGTGAGTTTGT
AGCCATCCTTGTTGACGGTGGCCGGCGGAGCGAACTCCTGCTCCTGCCAG
CGGGCAATCTGCTGCCAGTTCCTCGGTAGCGCCACACTCCAAACGGGCGG
CTCGTGGAAGAAGGCGTGAAAGGGCGAGGAGAGGCGTGGCATCCGTGCCA
TCTCCTCGGCCATGCGCCAAAACATCGGTAAGGAACGCATGTCGACTGAT
AACT
BO08888.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4460-PA | 525 | Hsp22-RA | 1..522 | 540..19 | 2610 | 100 | Minus |
CG4460-PB | 525 | Hsp22-RB | 1..522 | 540..19 | 2610 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:31:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsp67Bb-RB | 1900 | CG4456-RB | 1187..1708 | 540..19 | 2610 | 100 | Minus |
Hsp22-RB | 968 | CG4460-RB | 255..776 | 540..19 | 2610 | 100 | Minus |
Hsp22-RA | 1900 | CG4460-RA | 1187..1708 | 540..19 | 2610 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:31:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9374251..9374772 | 540..19 | 2610 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 14:31:08 has no hits.
BO08888.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:13 Download gff for
BO08888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4460-PB | 1..525 | 18..540 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:27 Download gff for
BO08888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4460-PB | 1..525 | 18..540 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:56:45 Download gff for
BO08888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsp67Bb-RB | 1187..1708 | 19..540 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:37:08 Download gff for
BO08888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsp22-RA | 1187..1708 | 19..540 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:37:08 Download gff for
BO08888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9374251..9374772 | 19..540 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:56:45 Download gff for
BO08888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9367351..9367872 | 19..540 | 100 | | Minus |
BO08888.5prime Sequence
554 bp (553 high quality bases) assembled on 2006-01-09
> BO08888.5prime
GAAGTTATCAGTCGACATGCGTTCCTTACCGATGTTTTGGCGCATGGCCG
AGGAGATGGCACGGATGCCACGCCTCTCCTCGCCCTTTCACGCCTTCTTC
CACGAGCCGCCCGTTTGGAGTGTGGCGCTACCGAGGAACTGGCAGCAGAT
TGCCCGCTGGCAGGAGCAGGAGTTCGCTCCGCCGGCCACCGTCAACAAGG
ATGGCTACAAACTCACCCTGGACGTCAAGGACTACAGCGAGCTAAAGGTC
AAGGTGCTGGACGAGAGCGTTGTCCTGGTGGAGGGAAAATCAGAGCAGCA
GGAGGCCGAACAAGGTGGCTATAGCTCCAGGCACTTCCTCCGCCGCTTCG
TCCTGCCGGAAGGATACGAGGCGGACAAGGTGACCTCAACGCTGAGCAGC
GACGGCGTCCTGACCATCAGTGTGCCCAATCCTCCAGGCGTGCAGGAGAC
ACTCAAGGAGCGTGAGGTGACCATCGAGCAGACTGGCGAGCCGGCAAAGA
AGTCCGCCGAGGAGCCAAATGACAAAGCCGCCAGTCAGGCAAGCTTTCTA
GACC
BO08888.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4460-PA | 525 | Hsp22-RA | 1..522 | 17..538 | 2610 | 100 | Plus |
CG4460-PB | 525 | Hsp22-RB | 1..522 | 17..538 | 2610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:37:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsp67Bb-RB | 1900 | CG4456-RB | 1187..1708 | 17..538 | 2610 | 100 | Plus |
Hsp22-RB | 968 | CG4460-RB | 255..776 | 17..538 | 2610 | 100 | Plus |
Hsp22-RA | 1900 | CG4460-RA | 1187..1708 | 17..538 | 2610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:37:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9374251..9374772 | 17..538 | 2610 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:37:21 has no hits.
BO08888.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:14 Download gff for
BO08888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4460-PB | 1..525 | 17..539 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:28 Download gff for
BO08888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4460-PB | 1..525 | 17..539 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 16:54:41 Download gff for
BO08888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsp67Bb-RB | 1187..1708 | 17..538 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:13:22 Download gff for
BO08888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsp22-RA | 1187..1708 | 17..538 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:13:22 Download gff for
BO08888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9374251..9374772 | 17..538 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 16:54:41 Download gff for
BO08888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9367351..9367872 | 17..538 | 100 | | Plus |
BO08888.complete Sequence
556 bp (556 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631305
> BO08888.complete
GAAGTTATCAGTCGACATGCGTTCCTTACCGATGTTTTGGCGCATGGCCG
AGGAGATGGCACGGATGCCACGCCTCTCCTCGCCCTTTCACGCCTTCTTC
CACGAGCCGCCCGTTTGGAGTGTGGCGCTACCGAGGAACTGGCAGCAGAT
TGCCCGCTGGCAGGAGCAGGAGTTCGCTCCGCCGGCCACCGTCAACAAGG
ATGGCTACAAACTCACCCTGGACGTCAAGGACTACAGCGAGCTAAAGGTC
AAGGTGCTGGACGAGAGCGTTGTCCTGGTGGAGGGAAAATCAGAGCAGCA
GGAGGCCGAACAAGGTGGCTATAGCTCCAGGCACTTCCTCCGCCGCTTCG
TCCTGCCGGAAGGATACGAGGCGGACAAGGTGACCTCAACGCTGAGCAGC
GACGGCGTCCTGACCATCAGTGTGCCCAATCCTCCAGGCGTGCAGGAGAC
ACTCAAGGAGCGTGAGGTGACCATCGAGCAGACTGGCGAGCCGGCAAAGA
AGTCCGCCGAGGAGCCAAATGACAAAGCCGCCAGTCAGGCAAGCTTTCTA
GACCAT
BO08888.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:45:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsp22-RB | 525 | CG4460-PB | 1..522 | 17..538 | 2610 | 100 | Plus |
Hsp22-RA | 525 | CG4460-PA | 1..522 | 17..538 | 2610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:45:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsp67Bb-RB | 1900 | CG4456-RB | 1187..1708 | 17..538 | 2610 | 100 | Plus |
Hsp22-RB | 968 | CG4460-RB | 255..776 | 17..538 | 2610 | 100 | Plus |
Hsp22-RA | 1900 | CG4460-RA | 1187..1708 | 17..538 | 2610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:45:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9374251..9374772 | 17..538 | 2610 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:45:01 has no hits.
BO08888.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:14:05 Download gff for
BO08888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsp22-RB | 1..525 | 17..539 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:32:52 Download gff for
BO08888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsp67Bb-RB | 1187..1708 | 17..538 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:29 Download gff for
BO08888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsp67Bb-RB | 1187..1708 | 17..540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:14:05 Download gff for
BO08888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsp67Bb-RB | 1187..1708 | 17..538 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:57 Download gff for
BO08888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsp22-RA | 1187..1708 | 17..540 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:51:57 Download gff for
BO08888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9374251..9374772 | 17..540 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:29 Download gff for
BO08888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9367351..9367872 | 17..540 | 99 | | Plus |
BO08888.pep Sequence
Translation from 16 to 556
> BO08888.pep
MRSLPMFWRMAEEMARMPRLSSPFHAFFHEPPVWSVALPRNWQQIARWQE
QEFAPPATVNKDGYKLTLDVKDYSELKVKVLDESVVLVEGKSEQQEAEQG
GYSSRHFLRRFVLPEGYEADKVTSTLSSDGVLTISVPNPPGVQETLKERE
VTIEQTGEPAKKSAEEPNDKAASQASFLDH
BO08888.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsp22-PB | 174 | CG4460-PB | 1..174 | 1..174 | 906 | 100 | Plus |
Hsp22-PA | 174 | CG4460-PA | 1..174 | 1..174 | 906 | 100 | Plus |
Hsp23-PB | 186 | CG4463-PB | 1..180 | 1..174 | 287 | 39.7 | Plus |
Hsp23-PA | 186 | CG4463-PA | 1..180 | 1..174 | 287 | 39.7 | Plus |
Hsp26-PB | 208 | CG4183-PB | 68..182 | 43..157 | 251 | 44.4 | Plus |