Clone Sequence Records
BO08892.3prime Sequence
931 bp (852 high quality bases) assembled on 2006-01-09
> BO08892.3prime
ATGGTCTAGAAAGCTTGCACTCTCCTCCTTGCTGGGACTGTCTTTCCCCA
AGAACTCTGTGTCATTGGAATTGCTGAAGTGGCTCCTGGCAGCTGCAACT
GACTTTGGTGGGATGTTGAACAGTGGGTGGGTAGGCAGTAGCTCGTTAAT
GGTGTCGCCCAGGACCTGGGGGCTGCTGGCGCACTCCGAGTGCTGGGCAA
TGGAAACGCCACTAAGAGTATAGCATGTGTGGTAGAGATCCTGCGGTTTT
CCGGGTTTGTCGATAAGCCCGCCGCTCTGCTTTTGGCAGCAGAGCAGGAT
GTACTCCTGCAGGGCCTCCACATCGAAAAGGGTGTGCTCCATTTGCTTAT
CGACGCCGGATAGCGTTGCCTGCGTAATGGGAATGGTGGCTCCCACCCAG
AAGGAGTAGCAGCCATCAACCAGTTTGTTGGTCCTCCCTTGGAAGCCGCC
TTCGTAGGTCATCTGACGGCGCAGTGTCCATTTGAGCAAAGCCTGCCTGT
CGCACTTATCAGCCTCGTTGAGCAGCGCCAGGCCCGCGATTCCGCAGAAG
GTGTAGCCACCATGGGCCTCCAGACCAGGGGCTCCTCCAAATCCTCCCTC
GTATGTCTGACACTGGGCTATCCAGTCGCCAGTGCCGGCAAATAGCTCCT
TGATCACTGGCTCGGGAAGATTTAGCAGCTTTGCGCAGGAGATTGCGCAG
TAGGCGCCACGCACATCCGTCTCACCATCCACGTGGAGCCGGAAGGAGCC
GTCTGAGTCACGTACACTGAACAGGAACTGGACCAAAGTCGGTCGGTCTA
TGGCACGGTACGCCTGCTCGCTTCCGATGATGCACAGACTGTTCACTGCT
GCATAGGTGGGCGCCAGATGGGCATACTGTCCAGGTCCTCCTCCAAACCC
CCAGTCGGCGAACGGCAGTTGCTTAAAAACT
BO08892.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17565-PA | 1260 | CG17565-RA | 379..1257 | 897..19 | 4395 | 100 | Minus |
CG17565-PA | 1260 | CG17565-RA | 344..380 | 931..895 | 160 | 97.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17565-RA | 1569 | CG17565-RA | 429..1342 | 931..19 | 4530 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16433557..16434228 | 918..248 | 3310 | 99.9 | Minus |
3R | 32079331 | 3R | 16434285..16434513 | 247..19 | 1145 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:45:34 has no hits.
BO08892.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:18 Download gff for
BO08892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17565-PA | 344..1260 | 15..931 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:33 Download gff for
BO08892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17565-PA | 344..1260 | 15..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:02:04 Download gff for
BO08892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17565-RA | 429..1353 | 6..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:08:04 Download gff for
BO08892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17565-RA | 429..1353 | 6..931 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:08:04 Download gff for
BO08892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16433558..16434228 | 248..917 | 99 | -> | Minus |
3R | 16434285..16434524 | 6..247 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:02:04 Download gff for
BO08892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12259280..12259950 | 248..917 | 99 | -> | Minus |
arm_3R | 12260007..12260246 | 6..247 | 97 | | Minus |
BO08892.5prime Sequence
937 bp (855 high quality bases) assembled on 2006-01-09
> BO08892.5prime
GAAGTTATCAGTCGACATGGGAACCGAGGAGGAGCTGATGTTCCGCAACT
TCCAGCGCCTGAAAAGCTACATCTTCGACGACGAGAAGGTGTCCACCACC
ACATCCCGCGAGCAACAAAAGACGGAGAGTTCGGTGGAGAAATGCTTCGA
CCGCTTCGAGCAGATAATGTTCACCGACCCGCGCCTCACCCAGATCTTCC
GGCTGGAGCACCAGTACTACCTGGACGCGATGCTGAGGCGGCTGCCGTCC
AATTACGAGTGCCTGGACAGCAGTCGCGCGTGGTGCGTTTACTGGATCCT
GCAGGCGGCCCAGCTACTTAGCTTTAACTTCGACGACCAGACATTGAACC
ACGTGGTCCAGTTTCTAAGCAACTGCCGTTCGCCGACTGGGGGTTTTGGA
GGAGGACCTGGACAGTATGCCCATCTGGCGCCCACCTATGCAGCAGTGAA
CAGTCTGTGCATCATCGGAAGCGAGCAGGCGTACCGTGCCATAGACCGAC
CGACTTTGGTCCAGTTCCTGTTCAGTGTACGTGACTCAGACGGCTCCTTC
CGGCTCCACGTGGATGGTGAGACGGATGTGCGTGGCGCCTACTGCGCAAT
CTCCTGCGCAAAGCTGCTAAATCTTCCCGAGCCAGTGATCAAGGAGCTAT
TTGCCGGCACTGGCGACTGGATAGCCCAGTGTCAGACATACGAGGGAGGA
TTTGGAGGAGCCCCTGGTCTGGAGGCCCATGGTGGCTACACCTTCTGCGG
AATCGCGGGCCTGGCGCTGCTCAACGAGGCTGATAAGTGCGACAGGCAGG
CTTTGCTCAAATGGACACTGCGCCGTCAGATGACCTACGAAGGCGGCTTC
CAGGGAGGACAACAAACTGGTTGATGGCTGCTACTCCTTCTGGGTGGGAG
CCACCATTCCCATTACGCAGGCAACGCTATCCGGCGT
BO08892.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17565-PA | 1260 | CG17565-RA | 1..836 | 17..852 | 4180 | 100 | Plus |
CG17565-PA | 1260 | CG17565-RA | 846..923 | 860..937 | 390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:08:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17565-RA | 1569 | CG17565-RA | 79..1008 | 10..937 | 4570 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:08:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16433557..16434123 | 373..937 | 2735 | 99.6 | Plus |
3R | 32079331 | 3R | 16433234..16433498 | 112..376 | 1295 | 99.2 | Plus |
3R | 32079331 | 3R | 16433076..16433181 | 10..115 | 500 | 98.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 03:08:38 has no hits.
BO08892.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:19 Download gff for
BO08892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17565-PA | 1..923 | 17..937 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:34 Download gff for
BO08892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17565-PA | 1..923 | 17..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:42:14 Download gff for
BO08892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17565-RA | 79..1008 | 10..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:13:44 Download gff for
BO08892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17565-RA | 79..1008 | 10..937 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:13:44 Download gff for
BO08892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16433076..16433181 | 10..115 | 98 | -> | Plus |
3R | 16433238..16433494 | 116..372 | 100 | -> | Plus |
3R | 16433557..16434123 | 373..937 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:42:14 Download gff for
BO08892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12258798..12258903 | 10..115 | 98 | -> | Plus |
arm_3R | 12258960..12259216 | 116..372 | 100 | -> | Plus |
arm_3R | 12259279..12259845 | 373..937 | 99 | | Plus |
BO08892.complete Sequence
1291 bp (1291 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631306
> BO08892.complete
GAAGTTATCAGTCGACATGGGAACCGAGGAGGAGCTGATGTTCCGCAACT
TCCAGCGCCTGAAAAGCTACATCTTCGACGACGAGAAGGTGTCCACCACC
ACATCCCGCGAGCAACAAAAGACGGAGAGTTCGGTGGAGAAATGCTTCGA
CCGCTTCGAGCAGATAATGTTCACCGACCCGCGCCTCACCCAGATCTTCC
GGCTGGAGCACCAGTACTACCTGGACGCGATGCTGAGGCGGCTGCCGTCC
AATTACGAGTGCCTGGACAGCAGTCGCGCGTGGTGCGTTTACTGGATCCT
GCAGGCGGCCCAGCTACTTAGCTTTAACTTCGACGACCAGACATTGAACC
ACGTGGTCCAGTTTCTAAGCAACTGCCGTTCGCCGACTGGGGGTTTTGGA
GGAGGACCTGGACAGTATGCCCATCTGGCGCCCACCTATGCAGCAGTGAA
CAGTCTGTGCATCATCGGAAGCGAGCAGGCGTACCGTGCCATAGACCGAC
CGACTTTGGTCCAGTTCCTGTTCAGTGTACGTGACTCAGACGGCTCCTTC
CGGCTCCACGTGGATGGTGAGACGGATGTGCGTGGCGCCTACTGCGCAAT
CTCCTGCGCAAAGCTGCTAAATCTTCCCGAGCCAGTGATCAAGGAGCTAT
TTGCCGGCACTGGCGACTGGATAGCCCAGTGTCAGACATACGAGGGAGGA
TTTGGAGGAGCCCCTGGTCTGGAGGCCCATGGTGGCTACACCTTCTGCGG
AATCGCGGGCCTGGCGCTGCTCAACGAGGCTGATAAGTGCGACAGGCAGG
CTTTGCTCAAATGGACACTGCGCCGTCAGATGACCTACGAAGGCGGCTTC
CAAGGGAGGACCAACAAACTGGTTGATGGCTGCTACTCCTTCTGGGTGGG
AGCCACCATTCCCATTACGCAGGCAACGCTATCCGGCGTCGATAAGCAAA
TGGAGCACACCCTTTTCGATGTGGAGGCCCTGCAGGAGTACATCCTGCTC
TGCTGCCAAAAGCAGAGCGGCGGGCTTATCGACAAACCCGGAAAACCGCA
GGATCTCTACCACACATGCTATACTCTTAGTGGCGTTTCCATTGCCCAGC
ACTCGGAGTGCGCCAGCAGCCCCCAGGTCCTGGGCGACACCATTAACGAG
CTACTGCCTACCCACCCACTGTTCAACATCCCACCAAAGTCAGTTGCAGC
TGCCAGGAGCCACTTCAGCAATTCCAATGACACAGAGTTCTTGGGGAAAG
ACAGTCCCAGCAAGGAGGAGAGTGCAAGCTTTCTAGACCAT
BO08892.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:01:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17565-RA | 1260 | CG17565-PA | 1..1257 | 17..1273 | 6285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:01:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17565-RA | 1569 | CG17565-RA | 79..1342 | 10..1273 | 6290 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:01:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16433557..16434228 | 373..1044 | 3360 | 100 | Plus |
3R | 32079331 | 3R | 16433234..16433498 | 112..376 | 1295 | 99.2 | Plus |
3R | 32079331 | 3R | 16434285..16434513 | 1045..1273 | 1145 | 100 | Plus |
3R | 32079331 | 3R | 16433076..16433181 | 10..115 | 500 | 98.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 17:01:40 has no hits.
BO08892.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:31 Download gff for
BO08892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17565-RA | 1..1260 | 17..1277 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:41 Download gff for
BO08892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17565-RA | 96..1370 | 10..1286 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:20 Download gff for
BO08892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17565-RA | 86..1342 | 17..1275 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:31 Download gff for
BO08892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17565-RA | 96..1370 | 10..1286 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:42 Download gff for
BO08892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17565-RA | 86..1342 | 17..1275 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:42 Download gff for
BO08892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16433083..16433181 | 17..115 | 100 | -> | Plus |
3R | 16433238..16433494 | 116..372 | 100 | -> | Plus |
3R | 16433557..16434228 | 373..1044 | 100 | -> | Plus |
3R | 16434285..16434513 | 1045..1275 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:20 Download gff for
BO08892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12258805..12258903 | 17..115 | 100 | -> | Plus |
arm_3R | 12258960..12259216 | 116..372 | 100 | -> | Plus |
arm_3R | 12259279..12259950 | 373..1044 | 100 | -> | Plus |
arm_3R | 12260007..12260235 | 1045..1275 | 99 | | Plus |
BO08892.pep Sequence
Translation from 16 to 1291
> BO08892.pep
MGTEEELMFRNFQRLKSYIFDDEKVSTTTSREQQKTESSVEKCFDRFEQI
MFTDPRLTQIFRLEHQYYLDAMLRRLPSNYECLDSSRAWCVYWILQAAQL
LSFNFDDQTLNHVVQFLSNCRSPTGGFGGGPGQYAHLAPTYAAVNSLCII
GSEQAYRAIDRPTLVQFLFSVRDSDGSFRLHVDGETDVRGAYCAISCAKL
LNLPEPVIKELFAGTGDWIAQCQTYEGGFGGAPGLEAHGGYTFCGIAGLA
LLNEADKCDRQALLKWTLRRQMTYEGGFQGRTNKLVDGCYSFWVGATIPI
TQATLSGVDKQMEHTLFDVEALQEYILLCCQKQSGGLIDKPGKPQDLYHT
CYTLSGVSIAQHSECASSPQVLGDTINELLPTHPLFNIPPKSVAAARSHF
SNSNDTEFLGKDSPSKEESASFLDH
BO08892.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:43:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17565-PA | 419 | CG17565-PA | 1..419 | 1..419 | 2237 | 100 | Plus |
betaggt-II-PA | 347 | CG18627-PA | 61..318 | 91..363 | 345 | 31.4 | Plus |
betaggt-I-PB | 376 | CG3469-PB | 109..320 | 133..358 | 279 | 34.8 | Plus |
betaggt-I-PA | 395 | CG3469-PA | 109..320 | 133..358 | 279 | 34.8 | Plus |