Clone BO08892 Report

Search the DGRC for BO08892

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:88
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCG17565-RA
Protein status:BO08892.pep: validated full length
Sequenced Size:1291

Clone Sequence Records

BO08892.3prime Sequence

931 bp (852 high quality bases) assembled on 2006-01-09

> BO08892.3prime
ATGGTCTAGAAAGCTTGCACTCTCCTCCTTGCTGGGACTGTCTTTCCCCA
AGAACTCTGTGTCATTGGAATTGCTGAAGTGGCTCCTGGCAGCTGCAACT
GACTTTGGTGGGATGTTGAACAGTGGGTGGGTAGGCAGTAGCTCGTTAAT
GGTGTCGCCCAGGACCTGGGGGCTGCTGGCGCACTCCGAGTGCTGGGCAA
TGGAAACGCCACTAAGAGTATAGCATGTGTGGTAGAGATCCTGCGGTTTT
CCGGGTTTGTCGATAAGCCCGCCGCTCTGCTTTTGGCAGCAGAGCAGGAT
GTACTCCTGCAGGGCCTCCACATCGAAAAGGGTGTGCTCCATTTGCTTAT
CGACGCCGGATAGCGTTGCCTGCGTAATGGGAATGGTGGCTCCCACCCAG
AAGGAGTAGCAGCCATCAACCAGTTTGTTGGTCCTCCCTTGGAAGCCGCC
TTCGTAGGTCATCTGACGGCGCAGTGTCCATTTGAGCAAAGCCTGCCTGT
CGCACTTATCAGCCTCGTTGAGCAGCGCCAGGCCCGCGATTCCGCAGAAG
GTGTAGCCACCATGGGCCTCCAGACCAGGGGCTCCTCCAAATCCTCCCTC
GTATGTCTGACACTGGGCTATCCAGTCGCCAGTGCCGGCAAATAGCTCCT
TGATCACTGGCTCGGGAAGATTTAGCAGCTTTGCGCAGGAGATTGCGCAG
TAGGCGCCACGCACATCCGTCTCACCATCCACGTGGAGCCGGAAGGAGCC
GTCTGAGTCACGTACACTGAACAGGAACTGGACCAAAGTCGGTCGGTCTA
TGGCACGGTACGCCTGCTCGCTTCCGATGATGCACAGACTGTTCACTGCT
GCATAGGTGGGCGCCAGATGGGCATACTGTCCAGGTCCTCCTCCAAACCC
CCAGTCGGCGAACGGCAGTTGCTTAAAAACT

BO08892.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG17565-PA 1260 CG17565-RA 379..1257 897..19 4395 100 Minus
CG17565-PA 1260 CG17565-RA 344..380 931..895 160 97.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG17565-RA 1569 CG17565-RA 429..1342 931..19 4530 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16433557..16434228 918..248 3310 99.9 Minus
3R 32079331 3R 16434285..16434513 247..19 1145 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:45:34 has no hits.

BO08892.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:18 Download gff for BO08892.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17565-PA 344..1260 15..931 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:33 Download gff for BO08892.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17565-PA 344..1260 15..931 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:02:04 Download gff for BO08892.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17565-RA 429..1353 6..931 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:08:04 Download gff for BO08892.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17565-RA 429..1353 6..931 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:08:04 Download gff for BO08892.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16433558..16434228 248..917 99 -> Minus
3R 16434285..16434524 6..247 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:02:04 Download gff for BO08892.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12259280..12259950 248..917 99 -> Minus
arm_3R 12260007..12260246 6..247 97   Minus

BO08892.5prime Sequence

937 bp (855 high quality bases) assembled on 2006-01-09

> BO08892.5prime
GAAGTTATCAGTCGACATGGGAACCGAGGAGGAGCTGATGTTCCGCAACT
TCCAGCGCCTGAAAAGCTACATCTTCGACGACGAGAAGGTGTCCACCACC
ACATCCCGCGAGCAACAAAAGACGGAGAGTTCGGTGGAGAAATGCTTCGA
CCGCTTCGAGCAGATAATGTTCACCGACCCGCGCCTCACCCAGATCTTCC
GGCTGGAGCACCAGTACTACCTGGACGCGATGCTGAGGCGGCTGCCGTCC
AATTACGAGTGCCTGGACAGCAGTCGCGCGTGGTGCGTTTACTGGATCCT
GCAGGCGGCCCAGCTACTTAGCTTTAACTTCGACGACCAGACATTGAACC
ACGTGGTCCAGTTTCTAAGCAACTGCCGTTCGCCGACTGGGGGTTTTGGA
GGAGGACCTGGACAGTATGCCCATCTGGCGCCCACCTATGCAGCAGTGAA
CAGTCTGTGCATCATCGGAAGCGAGCAGGCGTACCGTGCCATAGACCGAC
CGACTTTGGTCCAGTTCCTGTTCAGTGTACGTGACTCAGACGGCTCCTTC
CGGCTCCACGTGGATGGTGAGACGGATGTGCGTGGCGCCTACTGCGCAAT
CTCCTGCGCAAAGCTGCTAAATCTTCCCGAGCCAGTGATCAAGGAGCTAT
TTGCCGGCACTGGCGACTGGATAGCCCAGTGTCAGACATACGAGGGAGGA
TTTGGAGGAGCCCCTGGTCTGGAGGCCCATGGTGGCTACACCTTCTGCGG
AATCGCGGGCCTGGCGCTGCTCAACGAGGCTGATAAGTGCGACAGGCAGG
CTTTGCTCAAATGGACACTGCGCCGTCAGATGACCTACGAAGGCGGCTTC
CAGGGAGGACAACAAACTGGTTGATGGCTGCTACTCCTTCTGGGTGGGAG
CCACCATTCCCATTACGCAGGCAACGCTATCCGGCGT

BO08892.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG17565-PA 1260 CG17565-RA 1..836 17..852 4180 100 Plus
CG17565-PA 1260 CG17565-RA 846..923 860..937 390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:08:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG17565-RA 1569 CG17565-RA 79..1008 10..937 4570 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:08:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16433557..16434123 373..937 2735 99.6 Plus
3R 32079331 3R 16433234..16433498 112..376 1295 99.2 Plus
3R 32079331 3R 16433076..16433181 10..115 500 98.1 Plus
Blast to na_te.dros performed on 2015-02-10 03:08:38 has no hits.

BO08892.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:19 Download gff for BO08892.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17565-PA 1..923 17..937 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:34 Download gff for BO08892.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17565-PA 1..923 17..937 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:42:14 Download gff for BO08892.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17565-RA 79..1008 10..937 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:13:44 Download gff for BO08892.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17565-RA 79..1008 10..937 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:13:44 Download gff for BO08892.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16433076..16433181 10..115 98 -> Plus
3R 16433238..16433494 116..372 100 -> Plus
3R 16433557..16434123 373..937 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:42:14 Download gff for BO08892.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12258798..12258903 10..115 98 -> Plus
arm_3R 12258960..12259216 116..372 100 -> Plus
arm_3R 12259279..12259845 373..937 99   Plus

BO08892.complete Sequence

1291 bp (1291 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ631306

> BO08892.complete
GAAGTTATCAGTCGACATGGGAACCGAGGAGGAGCTGATGTTCCGCAACT
TCCAGCGCCTGAAAAGCTACATCTTCGACGACGAGAAGGTGTCCACCACC
ACATCCCGCGAGCAACAAAAGACGGAGAGTTCGGTGGAGAAATGCTTCGA
CCGCTTCGAGCAGATAATGTTCACCGACCCGCGCCTCACCCAGATCTTCC
GGCTGGAGCACCAGTACTACCTGGACGCGATGCTGAGGCGGCTGCCGTCC
AATTACGAGTGCCTGGACAGCAGTCGCGCGTGGTGCGTTTACTGGATCCT
GCAGGCGGCCCAGCTACTTAGCTTTAACTTCGACGACCAGACATTGAACC
ACGTGGTCCAGTTTCTAAGCAACTGCCGTTCGCCGACTGGGGGTTTTGGA
GGAGGACCTGGACAGTATGCCCATCTGGCGCCCACCTATGCAGCAGTGAA
CAGTCTGTGCATCATCGGAAGCGAGCAGGCGTACCGTGCCATAGACCGAC
CGACTTTGGTCCAGTTCCTGTTCAGTGTACGTGACTCAGACGGCTCCTTC
CGGCTCCACGTGGATGGTGAGACGGATGTGCGTGGCGCCTACTGCGCAAT
CTCCTGCGCAAAGCTGCTAAATCTTCCCGAGCCAGTGATCAAGGAGCTAT
TTGCCGGCACTGGCGACTGGATAGCCCAGTGTCAGACATACGAGGGAGGA
TTTGGAGGAGCCCCTGGTCTGGAGGCCCATGGTGGCTACACCTTCTGCGG
AATCGCGGGCCTGGCGCTGCTCAACGAGGCTGATAAGTGCGACAGGCAGG
CTTTGCTCAAATGGACACTGCGCCGTCAGATGACCTACGAAGGCGGCTTC
CAAGGGAGGACCAACAAACTGGTTGATGGCTGCTACTCCTTCTGGGTGGG
AGCCACCATTCCCATTACGCAGGCAACGCTATCCGGCGTCGATAAGCAAA
TGGAGCACACCCTTTTCGATGTGGAGGCCCTGCAGGAGTACATCCTGCTC
TGCTGCCAAAAGCAGAGCGGCGGGCTTATCGACAAACCCGGAAAACCGCA
GGATCTCTACCACACATGCTATACTCTTAGTGGCGTTTCCATTGCCCAGC
ACTCGGAGTGCGCCAGCAGCCCCCAGGTCCTGGGCGACACCATTAACGAG
CTACTGCCTACCCACCCACTGTTCAACATCCCACCAAAGTCAGTTGCAGC
TGCCAGGAGCCACTTCAGCAATTCCAATGACACAGAGTTCTTGGGGAAAG
ACAGTCCCAGCAAGGAGGAGAGTGCAAGCTTTCTAGACCAT

BO08892.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:01:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG17565-RA 1260 CG17565-PA 1..1257 17..1273 6285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG17565-RA 1569 CG17565-RA 79..1342 10..1273 6290 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16433557..16434228 373..1044 3360 100 Plus
3R 32079331 3R 16433234..16433498 112..376 1295 99.2 Plus
3R 32079331 3R 16434285..16434513 1045..1273 1145 100 Plus
3R 32079331 3R 16433076..16433181 10..115 500 98.1 Plus
Blast to na_te.dros performed on 2014-11-27 17:01:40 has no hits.

BO08892.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:31 Download gff for BO08892.complete
Subject Subject Range Query Range Percent Splice Strand
CG17565-RA 1..1260 17..1277 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:41 Download gff for BO08892.complete
Subject Subject Range Query Range Percent Splice Strand
CG17565-RA 96..1370 10..1286 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:20 Download gff for BO08892.complete
Subject Subject Range Query Range Percent Splice Strand
CG17565-RA 86..1342 17..1275 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:31 Download gff for BO08892.complete
Subject Subject Range Query Range Percent Splice Strand
CG17565-RA 96..1370 10..1286 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:42 Download gff for BO08892.complete
Subject Subject Range Query Range Percent Splice Strand
CG17565-RA 86..1342 17..1275 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:42 Download gff for BO08892.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16433083..16433181 17..115 100 -> Plus
3R 16433238..16433494 116..372 100 -> Plus
3R 16433557..16434228 373..1044 100 -> Plus
3R 16434285..16434513 1045..1275 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:20 Download gff for BO08892.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12258805..12258903 17..115 100 -> Plus
arm_3R 12258960..12259216 116..372 100 -> Plus
arm_3R 12259279..12259950 373..1044 100 -> Plus
arm_3R 12260007..12260235 1045..1275 99   Plus

BO08892.pep Sequence

Translation from 16 to 1291

> BO08892.pep
MGTEEELMFRNFQRLKSYIFDDEKVSTTTSREQQKTESSVEKCFDRFEQI
MFTDPRLTQIFRLEHQYYLDAMLRRLPSNYECLDSSRAWCVYWILQAAQL
LSFNFDDQTLNHVVQFLSNCRSPTGGFGGGPGQYAHLAPTYAAVNSLCII
GSEQAYRAIDRPTLVQFLFSVRDSDGSFRLHVDGETDVRGAYCAISCAKL
LNLPEPVIKELFAGTGDWIAQCQTYEGGFGGAPGLEAHGGYTFCGIAGLA
LLNEADKCDRQALLKWTLRRQMTYEGGFQGRTNKLVDGCYSFWVGATIPI
TQATLSGVDKQMEHTLFDVEALQEYILLCCQKQSGGLIDKPGKPQDLYHT
CYTLSGVSIAQHSECASSPQVLGDTINELLPTHPLFNIPPKSVAAARSHF
SNSNDTEFLGKDSPSKEESASFLDH

BO08892.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG17565-PA 419 CG17565-PA 1..419 1..419 2237 100 Plus
betaggt-II-PA 347 CG18627-PA 61..318 91..363 345 31.4 Plus
betaggt-I-PB 376 CG3469-PB 109..320 133..358 279 34.8 Plus
betaggt-I-PA 395 CG3469-PA 109..320 133..358 279 34.8 Plus