Clone BO08893 Report

Search the DGRC for BO08893

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:88
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptCG8289-RA
Protein status:BO08893.pep: validated full length
Sequenced Size:1042

Clone Sequence Records

BO08893.3prime Sequence

908 bp (767 high quality bases) assembled on 2006-01-09

> BO08893.3prime
ATGGTCTAGAAAGCTTGCCTCCTCGCCGTAGAAAATGCGGTTTTTGGCGG
AAGAGCGCTTCGAGGAGCGTTCAATACGATTGTGCAGATTTGTCCTGGGA
TAGCATTCATCGACGAGGCGCTCGGTCTTCTTGGGCGATTCGCGCAGCTC
CTTAACGTCCACGTTCTCCTGGGTTGCTTGTTTCCGCATAAACTTTTCGA
TAAGCGCATCGCACGCCAGATTCTTACTCGGCTCCCAGGAATCATCCTTC
GGTCCATACTTCTTCCATCGGATCTTAAACATGTCGCCCTCCTTGGTGGC
AACGTGATCAAGAATTTTTTCGACTTCCCATTGCTTTTCTGGGTCGATTG
AATCGTCGGCTTTCTTGGTGCCGGCGTTCCGTCGACCACGTCCCTTAGCC
TTCTTAGCGTTTGGCGAGGACTTCGATTTAGCTGCAACCTTCTGGGGTTG
AGCTGATTTCTCATCCTCTGTTCCAGCATCGACATCGGATTCCGAATCCT
TTTCAGCAACCTTCTTGCCATTTTTGACGGAAGAAGTCGAAGCCCTGCTC
AGCTTGCGCTTCTTGATCGGACTTGATGCATGTGCAGAGGCTTTGGAGGT
GGAGGGCAGTTCATTGCTATCTTCCGTTTCACCGCGCACGGATCGCCGTG
TCTGGCGTTTGATATTTGGCTTCCTTGGCGAACTGTCGGCACTAGGGTCT
ACATCGGAATGATTAGCATCATCATCCGAATCCTCTATAACGATTTTTTT
GCCATTTTTGCGGGGCGAAGTGGTGGCGTTCCTGGCCTTGCCCACCTTGC
GCTTGTTCCTTGCAGCTGGTACATCCACGTTGGAGGTAGAGGTCTGGCAA
TCGCTGTCTTCGCTGTCAGAGGCCACAGTCAGTTTGGCCTTTCGTTTGTT
CGGCGTCT

BO08893.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG8289-PA 1011 CG8289-RA 119..1008 908..19 4450 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:23:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG8289-RA 1770 CG8289-RA 237..1126 908..19 4450 100 Minus
CG8289-RB 1767 CG8289-RB 237..1123 908..19 4395 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:23:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17635342..17635808 442..908 2335 100 Plus
X 23542271 X 17634574..17634980 38..444 2035 100 Plus
2L 23513712 2L 9788850..9789058 405..195 505 84.8 Minus
2L 23513712 2L 9789791..9789906 442..557 295 83.6 Plus
2L 23513712 2L 9789914..9790013 686..786 275 87.1 Plus
2L 23513712 2L 9789143..9789206 760..697 185 85.9 Minus
Blast to na_te.dros performed on 2015-02-10 23:23:48 has no hits.

BO08893.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:19 Download gff for BO08893.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8289-PA 119..1011 16..908 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:36 Download gff for BO08893.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8289-PA 119..1011 16..908 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:31:31 Download gff for BO08893.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8289-RA 237..1126 19..908 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:42:31 Download gff for BO08893.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8289-RA 237..1126 19..908 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:42:31 Download gff for BO08893.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17634574..17634977 38..441 100 <- Plus
X 17635342..17635808 442..908 100   Plus
X 17634335..17634353 19..37 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:31:31 Download gff for BO08893.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17528368..17528386 19..37 100 <- Plus
arm_X 17528607..17529010 38..441 100 <- Plus
arm_X 17529375..17529841 442..908 100   Plus

BO08893.5prime Sequence

907 bp (843 high quality bases) assembled on 2006-01-09

> BO08893.5prime
GAAGTTATCAGTCGACATGGCCAAGGCGAGTAAGAAGGTGGCAGAAAGTA
AGCGCAGGAACGGAGTCGCCAACGAGAGCGAAAACGAGGAGATTGACCAG
CAAAAGTCCAATGGGACAGGTCGATCGTCCAGGAAGACGCCGAACAAACG
AAAGGCCAAACTGACTGTGGCCTCTGACAGCGAAGACAGCGATTGCCAGA
CCTCTACCTCCAACGTGGATGTACCAGCTGCAAGGAACAAGCGCAAGGTG
GGCAAGGCCAGGAACGCCACCACTTCGCCCCGCAAAAATGGCAAAAAAAT
CGTTATAGAGGATTCGGATGATGATGCTAATCATTCCGATGTAGACCCTA
GTGCCGACAGTTCGCCAAGGAAGCCAAATATCAAACGCCAGACACGGCGA
TCCGTGCGCGGTGAAACGGAAGATAGCAATGAACTGCCCTCCACCTCCAA
AGCCTCTGCACATGCATCAAGTCCGATCAAGAAGCGCAAGCTGAGCAGGG
CTTCGACTTCTTCCGTCAAAAATGGCAAGAAGGTTGCTGAAAAGGATTCG
GAATCCGATGTCGATGCTGGAACAGAGGATGAGAAATCAGCTCAACCCCA
GAAGGTTGCAGCTAAATCGAAGTCCTCGCCAAACGCTAAGAAGGCTAAGG
GACGTGGTCGACGGAACGCCGGCACCAAGAAAGCCGACGATTCAATCGAC
CCAGAAAAGCAATGGGAAGTCGAAAAAATTCTTGATCACGTTGCCACCAA
GGAGGGCGACATGTTTAAGATCCGATGGAAGAAGTATGGACCGAAGGATG
ATTCCTGGGAGCCGAGTAAGAATCTGGCGTGCGATGCGCTTATCGAAAAG
TTTATGCGGAAACAAGCAACCCAAGAGAACGTGGACGTTAGGGAGCTGCG
CGAATCG

BO08893.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG8289-PA 1011 CG8289-RA 1..891 17..907 4405 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:52:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG8289-RA 1770 CG8289-RA 119..1009 17..907 4425 99.8 Plus
CG8289-RB 1767 CG8289-RB 119..1006 17..907 4370 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:52:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17635342..17635926 601..17 2925 100 Minus
X 23542271 X 17634672..17634980 907..599 1515 99.4 Minus
2L 23513712 2L 9788850..9789058 638..848 505 84.8 Plus
2L 23513712 2L 9789791..9789906 601..486 295 83.6 Minus
2L 23513712 2L 9789914..9790013 357..257 275 87.1 Minus
2L 23513712 2L 9789143..9789206 283..346 185 85.9 Plus
Blast to na_te.dros performed on 2015-02-12 01:52:24 has no hits.

BO08893.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:20 Download gff for BO08893.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8289-PA 1..891 17..907 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:37 Download gff for BO08893.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8289-PA 1..891 17..907 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:52:23 Download gff for BO08893.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8289-RA 111..1009 10..907 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:28 Download gff for BO08893.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8289-RA 111..1009 10..907 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:28 Download gff for BO08893.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17634672..17634977 602..907 99 <- Minus
X 17635342..17635934 10..601 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:52:23 Download gff for BO08893.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17528705..17529010 602..907 99 <- Minus
arm_X 17529375..17529967 10..601 99   Minus

BO08893.complete Sequence

1042 bp (1042 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ631307

> BO08893.complete
GAAGTTATCAGTCGACATGGCCAAGGCGAGTAAGAAGGTGGCAGAAAGTA
AGCGCAGGAACGGAGTCGCCAACGAGAGCGAAAACGAGGAGATTGACCAG
CAAAAGTCCAATGGGACAGGTCGATCGTCCAGGAAGACGCCGAACAAACG
AAAGGCCAAACTGACTGTGGCCTCTGACAGCGAAGACAGCGATTGCCAGA
CCTCTACCTCCAACGTGGATGTACCAGCTGCAAGGAACAAGCGCAAGGTG
GGCAAGGCCAGGAACGCCACCACTTCGCCCCGCAAAAATGGCAAAAAAAT
CGTTATAGAGGATTCGGATGATGATGCTAATCATTCCGATGTAGACCCTA
GTGCCGACAGTTCGCCAAGGAAGCCAAATATCAAACGCCAGACACGGCGA
TCCGTGCGCGGTGAAACGGAAGATAGCAATGAACTGCCCTCCACCTCCAA
AGCCTCTGCACATGCATCAAGTCCGATCAAGAAGCGCAAGCTGAGCAGGG
CTTCGACTTCTTCCGTCAAAAATGGCAAGAAGGTTGCTGAAAAGGATTCG
GAATCCGATGTCGATGCTGGAACAGAGGATGAGAAATCAGCTCAACCCCA
GAAGGTTGCAGCTAAATCGAAGTCCTCGCCAAACGCTAAGAAGGCTAAGG
GACGTGGTCGACGGAACGCCGGCACCAAGAAAGCCGACGATTCAATCGAC
CCAGAAAAGCAATGGGAAGTCGAAAAAATTCTTGATCACGTTGCCACCAA
GGAGGGCGACATGTTTAAGATCCGATGGAAGAAGTATGGACCGAAGGATG
ATTCCTGGGAGCCGAGTAAGAATCTGGCGTGCGATGCGCTTATCGAAAAG
TTTATGCGGAAACAAGCAACCCAGGAGAACGTGGACGTTAAGGAGCTGCG
CGAATCGCCCAAGAAGACCGAGCGCCTCGTCGATGAATGCTATCCCAGGA
CAAATCTGCACAATCGTATTGAACGCTCCTCGAAGCGCTCTTCCGCCAAA
AACCGCATTTTCTACGGCGAGGAGGCAAGCTTTCTAGACCAT

BO08893.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG8289-RA 1011 CG8289-PA 1..1008 17..1024 5040 100 Plus
CG8289-RB 1008 CG8289-PB 1..1005 17..1024 4960 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG8289-RA 1770 CG8289-RA 119..1126 17..1024 5040 100 Plus
CG8289-RB 1767 CG8289-RB 119..1123 17..1024 4960 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:22:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17635342..17635926 601..17 2925 100 Minus
X 23542271 X 17634574..17634980 1005..599 2035 100 Minus
2L 23513712 2L 9788850..9789058 638..848 505 84.8 Plus
2L 23513712 2L 9789791..9789906 601..486 295 83.6 Minus
2L 23513712 2L 9789914..9790013 357..257 275 87.1 Minus
2L 23513712 2L 9789143..9789206 283..346 185 85.9 Plus
Blast to na_te.dros performed on 2014-11-26 22:22:05 has no hits.

BO08893.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:32 Download gff for BO08893.complete
Subject Subject Range Query Range Percent Splice Strand
CG8289-RA 1..1011 17..1027 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:43 Download gff for BO08893.complete
Subject Subject Range Query Range Percent Splice Strand
CG8289-RA 109..1124 10..1024 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:55:40 Download gff for BO08893.complete
Subject Subject Range Query Range Percent Splice Strand
CG8289-RA 119..1126 17..1026 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:33 Download gff for BO08893.complete
Subject Subject Range Query Range Percent Splice Strand
CG8289-RA 109..1124 10..1024 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:58:53 Download gff for BO08893.complete
Subject Subject Range Query Range Percent Splice Strand
CG8289-RA 119..1126 17..1026 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:58:53 Download gff for BO08893.complete
Subject Subject Range Query Range Percent Splice Strand
X 17634574..17634977 602..1005 100 <- Minus
X 17635342..17635926 17..601 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:55:40 Download gff for BO08893.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17528607..17529010 602..1005 100 <- Minus
arm_X 17529375..17529959 17..601 100   Minus

BO08893.pep Sequence

Translation from 16 to 1042

> BO08893.pep
MAKASKKVAESKRRNGVANESENEEIDQQKSNGTGRSSRKTPNKRKAKLT
VASDSEDSDCQTSTSNVDVPAARNKRKVGKARNATTSPRKNGKKIVIEDS
DDDANHSDVDPSADSSPRKPNIKRQTRRSVRGETEDSNELPSTSKASAHA
SSPIKKRKLSRASTSSVKNGKKVAEKDSESDVDAGTEDEKSAQPQKVAAK
SKSSPNAKKAKGRGRRNAGTKKADDSIDPEKQWEVEKILDHVATKEGDMF
KIRWKKYGPKDDSWEPSKNLACDALIEKFMRKQATQENVDVKELRESPKK
TERLVDECYPRTNLHNRIERSSKRSSAKNRIFYGEEASFLDH

BO08893.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:43:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG8289-PA 336 CG8289-PA 1..336 1..336 1712 100 Plus
CG8289-PB 335 CG8289-PB 1..335 1..336 1695 99.7 Plus