Clone Sequence Records
BO08893.3prime Sequence
908 bp (767 high quality bases) assembled on 2006-01-09
> BO08893.3prime
ATGGTCTAGAAAGCTTGCCTCCTCGCCGTAGAAAATGCGGTTTTTGGCGG
AAGAGCGCTTCGAGGAGCGTTCAATACGATTGTGCAGATTTGTCCTGGGA
TAGCATTCATCGACGAGGCGCTCGGTCTTCTTGGGCGATTCGCGCAGCTC
CTTAACGTCCACGTTCTCCTGGGTTGCTTGTTTCCGCATAAACTTTTCGA
TAAGCGCATCGCACGCCAGATTCTTACTCGGCTCCCAGGAATCATCCTTC
GGTCCATACTTCTTCCATCGGATCTTAAACATGTCGCCCTCCTTGGTGGC
AACGTGATCAAGAATTTTTTCGACTTCCCATTGCTTTTCTGGGTCGATTG
AATCGTCGGCTTTCTTGGTGCCGGCGTTCCGTCGACCACGTCCCTTAGCC
TTCTTAGCGTTTGGCGAGGACTTCGATTTAGCTGCAACCTTCTGGGGTTG
AGCTGATTTCTCATCCTCTGTTCCAGCATCGACATCGGATTCCGAATCCT
TTTCAGCAACCTTCTTGCCATTTTTGACGGAAGAAGTCGAAGCCCTGCTC
AGCTTGCGCTTCTTGATCGGACTTGATGCATGTGCAGAGGCTTTGGAGGT
GGAGGGCAGTTCATTGCTATCTTCCGTTTCACCGCGCACGGATCGCCGTG
TCTGGCGTTTGATATTTGGCTTCCTTGGCGAACTGTCGGCACTAGGGTCT
ACATCGGAATGATTAGCATCATCATCCGAATCCTCTATAACGATTTTTTT
GCCATTTTTGCGGGGCGAAGTGGTGGCGTTCCTGGCCTTGCCCACCTTGC
GCTTGTTCCTTGCAGCTGGTACATCCACGTTGGAGGTAGAGGTCTGGCAA
TCGCTGTCTTCGCTGTCAGAGGCCACAGTCAGTTTGGCCTTTCGTTTGTT
CGGCGTCT
BO08893.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8289-PA | 1011 | CG8289-RA | 119..1008 | 908..19 | 4450 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:23:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8289-RA | 1770 | CG8289-RA | 237..1126 | 908..19 | 4450 | 100 | Minus |
CG8289-RB | 1767 | CG8289-RB | 237..1123 | 908..19 | 4395 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:23:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17635342..17635808 | 442..908 | 2335 | 100 | Plus |
X | 23542271 | X | 17634574..17634980 | 38..444 | 2035 | 100 | Plus |
2L | 23513712 | 2L | 9788850..9789058 | 405..195 | 505 | 84.8 | Minus |
2L | 23513712 | 2L | 9789791..9789906 | 442..557 | 295 | 83.6 | Plus |
2L | 23513712 | 2L | 9789914..9790013 | 686..786 | 275 | 87.1 | Plus |
2L | 23513712 | 2L | 9789143..9789206 | 760..697 | 185 | 85.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:23:48 has no hits.
BO08893.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:19 Download gff for
BO08893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8289-PA | 119..1011 | 16..908 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:36 Download gff for
BO08893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8289-PA | 119..1011 | 16..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:31:31 Download gff for
BO08893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8289-RA | 237..1126 | 19..908 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:42:31 Download gff for
BO08893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8289-RA | 237..1126 | 19..908 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:42:31 Download gff for
BO08893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17634574..17634977 | 38..441 | 100 | <- | Plus |
X | 17635342..17635808 | 442..908 | 100 | | Plus |
X | 17634335..17634353 | 19..37 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:31:31 Download gff for
BO08893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17528368..17528386 | 19..37 | 100 | <- | Plus |
arm_X | 17528607..17529010 | 38..441 | 100 | <- | Plus |
arm_X | 17529375..17529841 | 442..908 | 100 | | Plus |
BO08893.5prime Sequence
907 bp (843 high quality bases) assembled on 2006-01-09
> BO08893.5prime
GAAGTTATCAGTCGACATGGCCAAGGCGAGTAAGAAGGTGGCAGAAAGTA
AGCGCAGGAACGGAGTCGCCAACGAGAGCGAAAACGAGGAGATTGACCAG
CAAAAGTCCAATGGGACAGGTCGATCGTCCAGGAAGACGCCGAACAAACG
AAAGGCCAAACTGACTGTGGCCTCTGACAGCGAAGACAGCGATTGCCAGA
CCTCTACCTCCAACGTGGATGTACCAGCTGCAAGGAACAAGCGCAAGGTG
GGCAAGGCCAGGAACGCCACCACTTCGCCCCGCAAAAATGGCAAAAAAAT
CGTTATAGAGGATTCGGATGATGATGCTAATCATTCCGATGTAGACCCTA
GTGCCGACAGTTCGCCAAGGAAGCCAAATATCAAACGCCAGACACGGCGA
TCCGTGCGCGGTGAAACGGAAGATAGCAATGAACTGCCCTCCACCTCCAA
AGCCTCTGCACATGCATCAAGTCCGATCAAGAAGCGCAAGCTGAGCAGGG
CTTCGACTTCTTCCGTCAAAAATGGCAAGAAGGTTGCTGAAAAGGATTCG
GAATCCGATGTCGATGCTGGAACAGAGGATGAGAAATCAGCTCAACCCCA
GAAGGTTGCAGCTAAATCGAAGTCCTCGCCAAACGCTAAGAAGGCTAAGG
GACGTGGTCGACGGAACGCCGGCACCAAGAAAGCCGACGATTCAATCGAC
CCAGAAAAGCAATGGGAAGTCGAAAAAATTCTTGATCACGTTGCCACCAA
GGAGGGCGACATGTTTAAGATCCGATGGAAGAAGTATGGACCGAAGGATG
ATTCCTGGGAGCCGAGTAAGAATCTGGCGTGCGATGCGCTTATCGAAAAG
TTTATGCGGAAACAAGCAACCCAAGAGAACGTGGACGTTAGGGAGCTGCG
CGAATCG
BO08893.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8289-PA | 1011 | CG8289-RA | 1..891 | 17..907 | 4405 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:52:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8289-RA | 1770 | CG8289-RA | 119..1009 | 17..907 | 4425 | 99.8 | Plus |
CG8289-RB | 1767 | CG8289-RB | 119..1006 | 17..907 | 4370 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:52:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17635342..17635926 | 601..17 | 2925 | 100 | Minus |
X | 23542271 | X | 17634672..17634980 | 907..599 | 1515 | 99.4 | Minus |
2L | 23513712 | 2L | 9788850..9789058 | 638..848 | 505 | 84.8 | Plus |
2L | 23513712 | 2L | 9789791..9789906 | 601..486 | 295 | 83.6 | Minus |
2L | 23513712 | 2L | 9789914..9790013 | 357..257 | 275 | 87.1 | Minus |
2L | 23513712 | 2L | 9789143..9789206 | 283..346 | 185 | 85.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:52:24 has no hits.
BO08893.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:20 Download gff for
BO08893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8289-PA | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:37 Download gff for
BO08893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8289-PA | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:52:23 Download gff for
BO08893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8289-RA | 111..1009 | 10..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:28 Download gff for
BO08893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8289-RA | 111..1009 | 10..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:28 Download gff for
BO08893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17634672..17634977 | 602..907 | 99 | <- | Minus |
X | 17635342..17635934 | 10..601 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:52:23 Download gff for
BO08893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17528705..17529010 | 602..907 | 99 | <- | Minus |
arm_X | 17529375..17529967 | 10..601 | 99 | | Minus |
BO08893.complete Sequence
1042 bp (1042 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631307
> BO08893.complete
GAAGTTATCAGTCGACATGGCCAAGGCGAGTAAGAAGGTGGCAGAAAGTA
AGCGCAGGAACGGAGTCGCCAACGAGAGCGAAAACGAGGAGATTGACCAG
CAAAAGTCCAATGGGACAGGTCGATCGTCCAGGAAGACGCCGAACAAACG
AAAGGCCAAACTGACTGTGGCCTCTGACAGCGAAGACAGCGATTGCCAGA
CCTCTACCTCCAACGTGGATGTACCAGCTGCAAGGAACAAGCGCAAGGTG
GGCAAGGCCAGGAACGCCACCACTTCGCCCCGCAAAAATGGCAAAAAAAT
CGTTATAGAGGATTCGGATGATGATGCTAATCATTCCGATGTAGACCCTA
GTGCCGACAGTTCGCCAAGGAAGCCAAATATCAAACGCCAGACACGGCGA
TCCGTGCGCGGTGAAACGGAAGATAGCAATGAACTGCCCTCCACCTCCAA
AGCCTCTGCACATGCATCAAGTCCGATCAAGAAGCGCAAGCTGAGCAGGG
CTTCGACTTCTTCCGTCAAAAATGGCAAGAAGGTTGCTGAAAAGGATTCG
GAATCCGATGTCGATGCTGGAACAGAGGATGAGAAATCAGCTCAACCCCA
GAAGGTTGCAGCTAAATCGAAGTCCTCGCCAAACGCTAAGAAGGCTAAGG
GACGTGGTCGACGGAACGCCGGCACCAAGAAAGCCGACGATTCAATCGAC
CCAGAAAAGCAATGGGAAGTCGAAAAAATTCTTGATCACGTTGCCACCAA
GGAGGGCGACATGTTTAAGATCCGATGGAAGAAGTATGGACCGAAGGATG
ATTCCTGGGAGCCGAGTAAGAATCTGGCGTGCGATGCGCTTATCGAAAAG
TTTATGCGGAAACAAGCAACCCAGGAGAACGTGGACGTTAAGGAGCTGCG
CGAATCGCCCAAGAAGACCGAGCGCCTCGTCGATGAATGCTATCCCAGGA
CAAATCTGCACAATCGTATTGAACGCTCCTCGAAGCGCTCTTCCGCCAAA
AACCGCATTTTCTACGGCGAGGAGGCAAGCTTTCTAGACCAT
BO08893.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:22:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8289-RA | 1011 | CG8289-PA | 1..1008 | 17..1024 | 5040 | 100 | Plus |
CG8289-RB | 1008 | CG8289-PB | 1..1005 | 17..1024 | 4960 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:22:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8289-RA | 1770 | CG8289-RA | 119..1126 | 17..1024 | 5040 | 100 | Plus |
CG8289-RB | 1767 | CG8289-RB | 119..1123 | 17..1024 | 4960 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:22:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17635342..17635926 | 601..17 | 2925 | 100 | Minus |
X | 23542271 | X | 17634574..17634980 | 1005..599 | 2035 | 100 | Minus |
2L | 23513712 | 2L | 9788850..9789058 | 638..848 | 505 | 84.8 | Plus |
2L | 23513712 | 2L | 9789791..9789906 | 601..486 | 295 | 83.6 | Minus |
2L | 23513712 | 2L | 9789914..9790013 | 357..257 | 275 | 87.1 | Minus |
2L | 23513712 | 2L | 9789143..9789206 | 283..346 | 185 | 85.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:22:05 has no hits.
BO08893.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:32 Download gff for
BO08893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8289-RA | 1..1011 | 17..1027 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:43 Download gff for
BO08893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8289-RA | 109..1124 | 10..1024 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:55:40 Download gff for
BO08893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8289-RA | 119..1126 | 17..1026 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:33 Download gff for
BO08893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8289-RA | 109..1124 | 10..1024 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:58:53 Download gff for
BO08893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8289-RA | 119..1126 | 17..1026 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:58:53 Download gff for
BO08893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17634574..17634977 | 602..1005 | 100 | <- | Minus |
X | 17635342..17635926 | 17..601 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:55:40 Download gff for
BO08893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17528607..17529010 | 602..1005 | 100 | <- | Minus |
arm_X | 17529375..17529959 | 17..601 | 100 | | Minus |
BO08893.pep Sequence
Translation from 16 to 1042
> BO08893.pep
MAKASKKVAESKRRNGVANESENEEIDQQKSNGTGRSSRKTPNKRKAKLT
VASDSEDSDCQTSTSNVDVPAARNKRKVGKARNATTSPRKNGKKIVIEDS
DDDANHSDVDPSADSSPRKPNIKRQTRRSVRGETEDSNELPSTSKASAHA
SSPIKKRKLSRASTSSVKNGKKVAEKDSESDVDAGTEDEKSAQPQKVAAK
SKSSPNAKKAKGRGRRNAGTKKADDSIDPEKQWEVEKILDHVATKEGDMF
KIRWKKYGPKDDSWEPSKNLACDALIEKFMRKQATQENVDVKELRESPKK
TERLVDECYPRTNLHNRIERSSKRSSAKNRIFYGEEASFLDH
BO08893.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:43:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8289-PA | 336 | CG8289-PA | 1..336 | 1..336 | 1712 | 100 | Plus |
CG8289-PB | 335 | CG8289-PB | 1..335 | 1..336 | 1695 | 99.7 | Plus |