Clone Sequence Records
BO08894.3prime Sequence
767 bp (728 high quality bases) assembled on 2006-01-10
> BO08894.3prime
ATGGTCTAGAAAGCTTGCCTTTAAATCATCGGTATCCTCAATTAAATCGG
CGTACTCCTCCCAATCGTTGTTAGTCGAGCGTGTGCGCAAGTTTGATATT
GTCGGTTCGTCCTCATCTGCCTCGGTGTCGTCCTCGCCGGCCTTCCTGCC
CTTTCTGCGTCCTCCGCCACCATCGCCGCCGGTGCCGCCTTCGTCAACCA
CCTCGTAGTCCTTGAGTTCAGCTTCCAGATCCTTTTCCCATTGTTCCTCA
TCAGTCGCAGCTAATGCCTGCTGGGTCATGCTGTCGATGCCCAATTTGCG
CATGCCGTCTTGGATCTCAGCCAAGTCCGATTCGCTCGAGGCCTGGAAGT
CATCCGAAACGAATTCCGATTCGGAGATCTTCTGGCCCAGCTCTTTGCCG
GCTTGAGCCTTTGCCTTTGCCTTTGACTTGGCTGCCTGGACATCGCACTC
CTGCGCCTCCGGCTCAATCACGGCCTTCGGCTGCTCGGCAATGGCTTTCA
CACTCGAATCGCCCTTGGCTGGTTCGGCAGTCTTGGATTTCTTTTCTTTA
GTGGCCACTTCGTTGGCATCTTCGCCGCTTGAGGCCTGACCCACGCCATC
GGCGCCCAGAGTGCCCAACTCGGCGGCCTGGATGATCAGTGAGACGCGGT
AGAAGTAATTCCGCCAGAAATTCTCTTCAGTGATGATCTTGGGCACCAGC
TCGAATCGCATCGTCTCGAGCGCCTTGTCTTCGGCCATAATGGCTATGGC
CGTAGGATAGGCGGTGT
BO08894.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8884-PA | 1656 | Sap47-RA | 905..1653 | 767..19 | 3745 | 100 | Minus |
CG8884-PC | 1656 | Sap47-RC | 905..1653 | 767..19 | 3745 | 100 | Minus |
CG8884-PD | 1656 | Sap47-RD | 905..1653 | 767..19 | 3745 | 100 | Minus |
CG8884-PE | 1656 | Sap47-RE | 905..1653 | 767..19 | 3745 | 100 | Minus |
CG8884-PG | 1608 | Sap47-RG | 857..1605 | 767..19 | 3745 | 100 | Minus |
CG8884-PH | 1656 | Sap47-RH | 905..1653 | 767..19 | 3745 | 100 | Minus |
CG8884-PB | 1125 | Sap47-RB | 905..1106 | 767..566 | 1010 | 100 | Minus |
CG8884-PF | 1056 | Sap47-RF | 836..1037 | 767..566 | 1010 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:44:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sap47-RG | 4819 | CG8884-RG | 1496..2244 | 767..19 | 3745 | 100 | Minus |
Sap47-RE | 4989 | CG8884-RE | 1666..2414 | 767..19 | 3745 | 100 | Minus |
Sap47-RD | 5171 | CG8884-RD | 1848..2596 | 767..19 | 3745 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:44:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15955989..15956307 | 567..249 | 1595 | 100 | Minus |
3R | 32079331 | 3R | 15959319..15959549 | 249..19 | 1155 | 100 | Minus |
3R | 32079331 | 3R | 15955087..15955205 | 685..567 | 595 | 100 | Minus |
3R | 32079331 | 3R | 15954940..15955021 | 767..686 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:44:05 has no hits.
BO08894.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:21 Download gff for
BO08894.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sap47-PA | 905..1656 | 15..767 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:38 Download gff for
BO08894.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8884-PC | 905..1656 | 15..767 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:33:05 Download gff for
BO08894.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sap47-RD | 1848..2601 | 11..767 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:53:51 Download gff for
BO08894.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sap47-RD | 1848..2601 | 11..767 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:53:51 Download gff for
BO08894.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15954940..15955021 | 686..767 | 100 | -> | Minus |
3R | 15955087..15955205 | 567..685 | 100 | -> | Minus |
3R | 15955990..15956307 | 249..566 | 100 | -> | Minus |
3R | 15959320..15959554 | 11..248 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:33:05 Download gff for
BO08894.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11780662..11780743 | 686..767 | 100 | -> | Minus |
arm_3R | 11780809..11780927 | 567..685 | 100 | -> | Minus |
arm_3R | 11781712..11782029 | 249..566 | 100 | -> | Minus |
arm_3R | 11785042..11785276 | 11..248 | 98 | | Minus |
BO08894.5prime Sequence
708 bp (707 high quality bases) assembled on 2006-01-09
> BO08894.5prime
GAAGTTATCAGTCGACATGTTTTCGGGCCTAACAAATCAATTCACCTCGC
TGGTGGGCGCCGTTAAAGGAGGCGCTGGCGACGAGGATGTGCCCGCGCCC
ACAGGAGATGCGCCCGCAGCCGCTCCAGCAGCATCCACATCCGTGGAGGC
CACGGCCTCCTCCGCCGTGGACCCGGAGGCAGCTGCCGCAGCCGGTGGCG
AAGGACTCGAGGGCGAGGAAGCTGGCAAAAGACTTCCCAAATCCGCCTCC
CTGGTTGATTCATTAGTATCCGAAGCCACCGGATGGCTGGGCAGTGCCAA
GGGTTGGCTGGGAAACGCCTCGATACCGTCGATGCCAGCCATGCCGTCGA
TGCCATCGATGCCGGCCATGCCAGCGATGCCATCGATACCATCGATCCCG
GGACTCCGCAAGGGCGCAGGAGCCGATGGAGCCGAGGGCGCCGAGGGAGC
TGTCGCCGGAGAGGGCGGGGCCGCCGCCAGTGGAGCCGTGAGTGGTGGCG
AGGATGACGACAAGTCGAGGTATATTAGCGCCACGGAGGGCGCCGACTCG
CATCCTGCATCGGGCGGTGGCACGCCCACCGGCGACGAGGGTCAAATCGG
ACAGGGTAAGGGCGATGAAGTCAAAATTACCACAAAAGTAACACAGCAGG
CCAAACACTTTGGATCCTTCTTGTCATCGGCCATCAGCAAGGCTGGCAGC
AAAATCAA
BO08894.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8884-PA | 1656 | Sap47-RA | 1..692 | 17..708 | 3460 | 100 | Plus |
CG8884-PB | 1125 | Sap47-RB | 1..692 | 17..708 | 3460 | 100 | Plus |
CG8884-PC | 1656 | Sap47-RC | 1..692 | 17..708 | 3460 | 100 | Plus |
CG8884-PD | 1656 | Sap47-RD | 1..692 | 17..708 | 3460 | 100 | Plus |
CG8884-PE | 1656 | Sap47-RE | 1..692 | 17..708 | 3460 | 100 | Plus |
CG8884-PH | 1656 | Sap47-RH | 1..692 | 17..708 | 3460 | 100 | Plus |
CG8884-PG | 1608 | Sap47-RG | 216..644 | 280..708 | 2145 | 100 | Plus |
CG8884-PF | 1056 | Sap47-RF | 216..541 | 280..605 | 1630 | 100 | Plus |
CG8884-PG | 1608 | Sap47-RG | 1..215 | 17..231 | 1075 | 100 | Plus |
CG8884-PF | 1056 | Sap47-RF | 1..215 | 17..231 | 1075 | 100 | Plus |
CG8884-PF | 1056 | Sap47-RF | 542..623 | 627..708 | 410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:43:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sap47-RE | 4989 | CG8884-RE | 760..1453 | 15..708 | 3470 | 100 | Plus |
Sap47-RD | 5171 | CG8884-RD | 942..1635 | 15..708 | 3470 | 100 | Plus |
Sap47-RC | 4843 | CG8884-RC | 614..1307 | 15..708 | 3470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:43:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15951602..15951850 | 280..528 | 1245 | 100 | Plus |
3R | 32079331 | 3R | 15936124..15936340 | 15..231 | 1085 | 100 | Plus |
3R | 32079331 | 3R | 15954156..15954259 | 527..630 | 505 | 99 | Plus |
3R | 32079331 | 3R | 15954583..15954664 | 627..708 | 410 | 100 | Plus |
3R | 32079331 | 3R | 15944947..15944996 | 230..279 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:43:40 has no hits.
BO08894.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:22 Download gff for
BO08894.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sap47-PH | 1..690 | 17..706 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:40 Download gff for
BO08894.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8884-PD | 1..690 | 17..706 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:26:21 Download gff for
BO08894.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sap47-RC | 609..1305 | 10..706 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:36:03 Download gff for
BO08894.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sap47-RC | 609..1305 | 10..706 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 15:36:03 Download gff for
BO08894.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15936119..15936340 | 10..231 | 99 | -> | Plus |
3R | 15944949..15944996 | 232..279 | 100 | -> | Plus |
3R | 15951602..15951850 | 280..528 | 100 | -> | Plus |
3R | 15954158..15954255 | 529..626 | 100 | -> | Plus |
3R | 15954583..15954662 | 627..706 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:26:21 Download gff for
BO08894.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11761841..11762062 | 10..231 | 99 | -> | Plus |
arm_3R | 11770671..11770718 | 232..279 | 100 | -> | Plus |
arm_3R | 11777324..11777572 | 280..528 | 100 | -> | Plus |
arm_3R | 11779880..11779977 | 529..626 | 100 | -> | Plus |
arm_3R | 11780305..11780384 | 627..706 | 100 | | Plus |
BO08894.complete Sequence
1687 bp (1687 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631308
> BO08894.complete
GAAGTTATCAGTCGACATGTTTTCGGGCCTAACAAATCAATTCACCTCGC
TGGTGGGCGCCGTTAAAGGAGGCGCTGGCGACGAGGATGTGCCCGCGCCC
ACAGGAGATGCGCCCGCAGCCGCTCCAGCAGCATCCACATCCGTGGAGGC
CACGGCCTCCTCCGCCGTGGACCCGGAGGCAGCTGCCGCAGCCGGTGGCG
AAGGACTCGAGGGCGAGGAAGCTGGCAAAAGACTTCCCAAATCCGCCTCC
CTGGTTGATTCATTAGTATCCGAAGCCACCGGATGGCTGGGCAGTGCCAA
GGGTTGGCTGGGAAACGCCTCGATACCGTCGATGCCAGCCATGCCGTCGA
TGCCATCGATGCCGGCCATGCCAGCGATGCCATCGATACCATCGATCCCG
GGACTCCGCAAGGGCGCAGGAGCCGATGGAGCCGAGGGCGCCGAGGGAGC
TGTCGCCGGAGAGGGCGGGGCCGCCGCCAGTGGAGCCGTGAGTGGTGGCG
AGGATGACGACAAGTCGAGGTATATTAGCGCCACGGAGGGCGCCGACTCG
CATCCTGCATCGGGCGGTGGCACGCCCACCGGCGACGAGGGTCAAATCGG
ACAGGGTAAGGGCGATGAAGTCAAAATTACCACAAAAGTAACACAGCAGG
CCAAACACTTTGGATCCTTCTTGTCATCGGCCATCAGCAAGGCTGGCAGC
AAAATCAAGGAAACTGTCAAGGATAATACCATTCTCGACTCGTTCAACAA
GGAACAGGAAGCTTTCATCAAGGGCCAGGGAGGCGTGGGCAATGGAGCAG
CCCCCTGGATCGGACACGCCAACGAGGCCAAGATCAAGGAGGAAATCCTT
GGCCTGTCGCAGGATCGCCGCAACTTCGTGCGCGCCCCGCCCGCCGGCGT
GGACTTTGAGTTTAGCTACGACACCGCCTATCCTACGGCCATAGCCATTA
TGGCCGAAGACAAGGCGCTCGAGACGATGCGATTCGAGCTGGTGCCCAAG
ATCATCACTGAAGAGAATTTCTGGCGGAATTACTTCTACCGCGTCTCACT
GATCATCCAGGCCGCCGAGTTGGGCACTCTGGGCGCCGATGGCGTGGGTC
AGGCCTCAAGCGGCGAAGATGCCAACGAAGTGGCCACTAAAGAAAAGAAA
TCCAAGACTGCCGAACCAGCCAAGGGCGATTCGAGTGTGAAAGCCATTGC
CGAGCAGCCGAAGGCCGTGATTGAGCCGGAGGCGCAGGAGTGCGATGTCC
AGGCAGCCAAGTCAAAGGCAAAGGCAAAGGCTCAAGCCGGCAAAGAGCTG
GGCCAGAAGATCTCCGAATCGGAATTCGTTTCGGATGACTTCCAGGCCTC
GAGCGAATCGGACTTGGCTGAGATCCAAGACGGCATGCGCAAATTGGGCA
TCGACAGCATGACCCAGCAGGCATTAGCTGCGACTGATGAGGAACAATGG
GAAAAGGATCTGGAAGCTGAACTCAAGGACTACGAGGTGGTTGACGAAGG
CGGCACCGGCGGCGATGGTGGCGGAGGACGCAGAAAGGGCAGGAAGGCCG
GCGAGGACGACACCGAGGCAGATGAGGACGAACCGACAATATCAAACTTG
CGCACACGCTCGACTAACAACGATTGGGAGGAGTACGCCGATTTAATTGA
GGATACCGATGATTTAAAGGCAAGCTTTCTAGACCAT
BO08894.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:31:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sap47-RE | 1656 | CG8884-PE | 1..1653 | 17..1669 | 8265 | 100 | Plus |
Sap47-RD | 1656 | CG8884-PD | 1..1653 | 17..1669 | 8265 | 100 | Plus |
Sap47-RC | 1656 | CG8884-PC | 1..1653 | 17..1669 | 8265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:31:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sap47-RE | 4989 | CG8884-RE | 760..2414 | 15..1669 | 8275 | 100 | Plus |
Sap47-RD | 5171 | CG8884-RD | 942..2596 | 15..1669 | 8275 | 100 | Plus |
Sap47-RC | 4843 | CG8884-RC | 614..2268 | 15..1669 | 8275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:31:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15955989..15956307 | 1121..1439 | 1595 | 100 | Plus |
3R | 32079331 | 3R | 15954747..15955021 | 728..1002 | 1375 | 100 | Plus |
3R | 32079331 | 3R | 15951602..15951850 | 280..528 | 1245 | 100 | Plus |
3R | 32079331 | 3R | 15959319..15959549 | 1439..1669 | 1155 | 100 | Plus |
3R | 32079331 | 3R | 15936124..15936340 | 15..231 | 1085 | 100 | Plus |
3R | 32079331 | 3R | 15955087..15955205 | 1003..1121 | 595 | 100 | Plus |
3R | 32079331 | 3R | 15954156..15954259 | 527..630 | 505 | 99 | Plus |
3R | 32079331 | 3R | 15954583..15954683 | 627..727 | 505 | 100 | Plus |
3R | 32079331 | 3R | 15944947..15944996 | 230..279 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:31:07 has no hits.
BO08894.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:52 Download gff for
BO08894.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sap47-RD | 1..1656 | 17..1673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:54:18 Download gff for
BO08894.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sap47-RD | 951..2596 | 24..1671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:33 Download gff for
BO08894.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sap47-RC | 623..2268 | 24..1671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:52 Download gff for
BO08894.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sap47-RD | 937..2601 | 10..1677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:19:43 Download gff for
BO08894.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sap47-RC | 623..2268 | 24..1671 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:19:43 Download gff for
BO08894.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15959320..15959549 | 1440..1671 | 99 | | Plus |
3R | 15936133..15936340 | 24..231 | 100 | -> | Plus |
3R | 15944949..15944996 | 232..279 | 100 | -> | Plus |
3R | 15951602..15951850 | 280..528 | 100 | -> | Plus |
3R | 15954158..15954255 | 529..626 | 100 | -> | Plus |
3R | 15954583..15954683 | 627..727 | 100 | -> | Plus |
3R | 15954747..15955021 | 728..1002 | 100 | -> | Plus |
3R | 15955087..15955205 | 1003..1121 | 100 | -> | Plus |
3R | 15955990..15956307 | 1122..1439 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:33 Download gff for
BO08894.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11761855..11762062 | 24..231 | 100 | -> | Plus |
arm_3R | 11770671..11770718 | 232..279 | 100 | -> | Plus |
arm_3R | 11777324..11777572 | 280..528 | 100 | -> | Plus |
arm_3R | 11779880..11779977 | 529..626 | 100 | -> | Plus |
arm_3R | 11780305..11780405 | 627..727 | 100 | -> | Plus |
arm_3R | 11780469..11780743 | 728..1002 | 100 | -> | Plus |
arm_3R | 11780809..11780927 | 1003..1121 | 100 | -> | Plus |
arm_3R | 11781712..11782029 | 1122..1439 | 100 | -> | Plus |
arm_3R | 11785042..11785271 | 1440..1671 | 99 | | Plus |
BO08894.pep Sequence
Translation from 16 to 1687
> BO08894.pep
MFSGLTNQFTSLVGAVKGGAGDEDVPAPTGDAPAAAPAASTSVEATASSA
VDPEAAAAAGGEGLEGEEAGKRLPKSASLVDSLVSEATGWLGSAKGWLGN
ASIPSMPAMPSMPSMPAMPAMPSIPSIPGLRKGAGADGAEGAEGAVAGEG
GAAASGAVSGGEDDDKSRYISATEGADSHPASGGGTPTGDEGQIGQGKGD
EVKITTKVTQQAKHFGSFLSSAISKAGSKIKETVKDNTILDSFNKEQEAF
IKGQGGVGNGAAPWIGHANEAKIKEEILGLSQDRRNFVRAPPAGVDFEFS
YDTAYPTAIAIMAEDKALETMRFELVPKIITEENFWRNYFYRVSLIIQAA
ELGTLGADGVGQASSGEDANEVATKEKKSKTAEPAKGDSSVKAIAEQPKA
VIEPEAQECDVQAAKSKAKAKAQAGKELGQKISESEFVSDDFQASSESDL
AEIQDGMRKLGIDSMTQQALAATDEEQWEKDLEAELKDYEVVDEGGTGGD
GGGGRRKGRKAGEDDTEADEDEPTISNLRTRSTNNDWEEYADLIEDTDDL
KASFLDH
BO08894.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:59:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sap47-PE | 551 | CG8884-PE | 1..551 | 1..551 | 2799 | 100 | Plus |
Sap47-PD | 551 | CG8884-PD | 1..551 | 1..551 | 2799 | 100 | Plus |
Sap47-PC | 551 | CG8884-PC | 1..551 | 1..551 | 2799 | 100 | Plus |
Sap47-PA | 551 | CG8884-PA | 1..551 | 1..551 | 2799 | 100 | Plus |
Sap47-PG | 535 | CG8884-PG | 1..535 | 1..551 | 2696 | 96.9 | Plus |