Clone BO08894 Report

Search the DGRC for BO08894

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:88
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptSap47-RA
Protein status:BO08894.pep: validated full length
Sequenced Size:1687

Clone Sequence Records

BO08894.3prime Sequence

767 bp (728 high quality bases) assembled on 2006-01-10

> BO08894.3prime
ATGGTCTAGAAAGCTTGCCTTTAAATCATCGGTATCCTCAATTAAATCGG
CGTACTCCTCCCAATCGTTGTTAGTCGAGCGTGTGCGCAAGTTTGATATT
GTCGGTTCGTCCTCATCTGCCTCGGTGTCGTCCTCGCCGGCCTTCCTGCC
CTTTCTGCGTCCTCCGCCACCATCGCCGCCGGTGCCGCCTTCGTCAACCA
CCTCGTAGTCCTTGAGTTCAGCTTCCAGATCCTTTTCCCATTGTTCCTCA
TCAGTCGCAGCTAATGCCTGCTGGGTCATGCTGTCGATGCCCAATTTGCG
CATGCCGTCTTGGATCTCAGCCAAGTCCGATTCGCTCGAGGCCTGGAAGT
CATCCGAAACGAATTCCGATTCGGAGATCTTCTGGCCCAGCTCTTTGCCG
GCTTGAGCCTTTGCCTTTGCCTTTGACTTGGCTGCCTGGACATCGCACTC
CTGCGCCTCCGGCTCAATCACGGCCTTCGGCTGCTCGGCAATGGCTTTCA
CACTCGAATCGCCCTTGGCTGGTTCGGCAGTCTTGGATTTCTTTTCTTTA
GTGGCCACTTCGTTGGCATCTTCGCCGCTTGAGGCCTGACCCACGCCATC
GGCGCCCAGAGTGCCCAACTCGGCGGCCTGGATGATCAGTGAGACGCGGT
AGAAGTAATTCCGCCAGAAATTCTCTTCAGTGATGATCTTGGGCACCAGC
TCGAATCGCATCGTCTCGAGCGCCTTGTCTTCGGCCATAATGGCTATGGC
CGTAGGATAGGCGGTGT

BO08894.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG8884-PA 1656 Sap47-RA 905..1653 767..19 3745 100 Minus
CG8884-PC 1656 Sap47-RC 905..1653 767..19 3745 100 Minus
CG8884-PD 1656 Sap47-RD 905..1653 767..19 3745 100 Minus
CG8884-PE 1656 Sap47-RE 905..1653 767..19 3745 100 Minus
CG8884-PG 1608 Sap47-RG 857..1605 767..19 3745 100 Minus
CG8884-PH 1656 Sap47-RH 905..1653 767..19 3745 100 Minus
CG8884-PB 1125 Sap47-RB 905..1106 767..566 1010 100 Minus
CG8884-PF 1056 Sap47-RF 836..1037 767..566 1010 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:44:10
Subject Length Description Subject Range Query Range Score Percent Strand
Sap47-RG 4819 CG8884-RG 1496..2244 767..19 3745 100 Minus
Sap47-RE 4989 CG8884-RE 1666..2414 767..19 3745 100 Minus
Sap47-RD 5171 CG8884-RD 1848..2596 767..19 3745 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:44:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15955989..15956307 567..249 1595 100 Minus
3R 32079331 3R 15959319..15959549 249..19 1155 100 Minus
3R 32079331 3R 15955087..15955205 685..567 595 100 Minus
3R 32079331 3R 15954940..15955021 767..686 410 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:44:05 has no hits.

BO08894.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:21 Download gff for BO08894.3prime
Subject Subject Range Query Range Percent Splice Strand
Sap47-PA 905..1656 15..767 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:38 Download gff for BO08894.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8884-PC 905..1656 15..767 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:33:05 Download gff for BO08894.3prime
Subject Subject Range Query Range Percent Splice Strand
Sap47-RD 1848..2601 11..767 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:53:51 Download gff for BO08894.3prime
Subject Subject Range Query Range Percent Splice Strand
Sap47-RD 1848..2601 11..767 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:53:51 Download gff for BO08894.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15954940..15955021 686..767 100 -> Minus
3R 15955087..15955205 567..685 100 -> Minus
3R 15955990..15956307 249..566 100 -> Minus
3R 15959320..15959554 11..248 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:33:05 Download gff for BO08894.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11780662..11780743 686..767 100 -> Minus
arm_3R 11780809..11780927 567..685 100 -> Minus
arm_3R 11781712..11782029 249..566 100 -> Minus
arm_3R 11785042..11785276 11..248 98   Minus

BO08894.5prime Sequence

708 bp (707 high quality bases) assembled on 2006-01-09

> BO08894.5prime
GAAGTTATCAGTCGACATGTTTTCGGGCCTAACAAATCAATTCACCTCGC
TGGTGGGCGCCGTTAAAGGAGGCGCTGGCGACGAGGATGTGCCCGCGCCC
ACAGGAGATGCGCCCGCAGCCGCTCCAGCAGCATCCACATCCGTGGAGGC
CACGGCCTCCTCCGCCGTGGACCCGGAGGCAGCTGCCGCAGCCGGTGGCG
AAGGACTCGAGGGCGAGGAAGCTGGCAAAAGACTTCCCAAATCCGCCTCC
CTGGTTGATTCATTAGTATCCGAAGCCACCGGATGGCTGGGCAGTGCCAA
GGGTTGGCTGGGAAACGCCTCGATACCGTCGATGCCAGCCATGCCGTCGA
TGCCATCGATGCCGGCCATGCCAGCGATGCCATCGATACCATCGATCCCG
GGACTCCGCAAGGGCGCAGGAGCCGATGGAGCCGAGGGCGCCGAGGGAGC
TGTCGCCGGAGAGGGCGGGGCCGCCGCCAGTGGAGCCGTGAGTGGTGGCG
AGGATGACGACAAGTCGAGGTATATTAGCGCCACGGAGGGCGCCGACTCG
CATCCTGCATCGGGCGGTGGCACGCCCACCGGCGACGAGGGTCAAATCGG
ACAGGGTAAGGGCGATGAAGTCAAAATTACCACAAAAGTAACACAGCAGG
CCAAACACTTTGGATCCTTCTTGTCATCGGCCATCAGCAAGGCTGGCAGC
AAAATCAA

BO08894.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG8884-PA 1656 Sap47-RA 1..692 17..708 3460 100 Plus
CG8884-PB 1125 Sap47-RB 1..692 17..708 3460 100 Plus
CG8884-PC 1656 Sap47-RC 1..692 17..708 3460 100 Plus
CG8884-PD 1656 Sap47-RD 1..692 17..708 3460 100 Plus
CG8884-PE 1656 Sap47-RE 1..692 17..708 3460 100 Plus
CG8884-PH 1656 Sap47-RH 1..692 17..708 3460 100 Plus
CG8884-PG 1608 Sap47-RG 216..644 280..708 2145 100 Plus
CG8884-PF 1056 Sap47-RF 216..541 280..605 1630 100 Plus
CG8884-PG 1608 Sap47-RG 1..215 17..231 1075 100 Plus
CG8884-PF 1056 Sap47-RF 1..215 17..231 1075 100 Plus
CG8884-PF 1056 Sap47-RF 542..623 627..708 410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
Sap47-RE 4989 CG8884-RE 760..1453 15..708 3470 100 Plus
Sap47-RD 5171 CG8884-RD 942..1635 15..708 3470 100 Plus
Sap47-RC 4843 CG8884-RC 614..1307 15..708 3470 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15951602..15951850 280..528 1245 100 Plus
3R 32079331 3R 15936124..15936340 15..231 1085 100 Plus
3R 32079331 3R 15954156..15954259 527..630 505 99 Plus
3R 32079331 3R 15954583..15954664 627..708 410 100 Plus
3R 32079331 3R 15944947..15944996 230..279 250 100 Plus
Blast to na_te.dros performed on 2015-02-11 12:43:40 has no hits.

BO08894.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:22 Download gff for BO08894.5prime
Subject Subject Range Query Range Percent Splice Strand
Sap47-PH 1..690 17..706 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:40 Download gff for BO08894.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8884-PD 1..690 17..706 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:26:21 Download gff for BO08894.5prime
Subject Subject Range Query Range Percent Splice Strand
Sap47-RC 609..1305 10..706 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:36:03 Download gff for BO08894.5prime
Subject Subject Range Query Range Percent Splice Strand
Sap47-RC 609..1305 10..706 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 15:36:03 Download gff for BO08894.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15936119..15936340 10..231 99 -> Plus
3R 15944949..15944996 232..279 100 -> Plus
3R 15951602..15951850 280..528 100 -> Plus
3R 15954158..15954255 529..626 100 -> Plus
3R 15954583..15954662 627..706 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:26:21 Download gff for BO08894.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11761841..11762062 10..231 99 -> Plus
arm_3R 11770671..11770718 232..279 100 -> Plus
arm_3R 11777324..11777572 280..528 100 -> Plus
arm_3R 11779880..11779977 529..626 100 -> Plus
arm_3R 11780305..11780384 627..706 100   Plus

BO08894.complete Sequence

1687 bp (1687 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631308

> BO08894.complete
GAAGTTATCAGTCGACATGTTTTCGGGCCTAACAAATCAATTCACCTCGC
TGGTGGGCGCCGTTAAAGGAGGCGCTGGCGACGAGGATGTGCCCGCGCCC
ACAGGAGATGCGCCCGCAGCCGCTCCAGCAGCATCCACATCCGTGGAGGC
CACGGCCTCCTCCGCCGTGGACCCGGAGGCAGCTGCCGCAGCCGGTGGCG
AAGGACTCGAGGGCGAGGAAGCTGGCAAAAGACTTCCCAAATCCGCCTCC
CTGGTTGATTCATTAGTATCCGAAGCCACCGGATGGCTGGGCAGTGCCAA
GGGTTGGCTGGGAAACGCCTCGATACCGTCGATGCCAGCCATGCCGTCGA
TGCCATCGATGCCGGCCATGCCAGCGATGCCATCGATACCATCGATCCCG
GGACTCCGCAAGGGCGCAGGAGCCGATGGAGCCGAGGGCGCCGAGGGAGC
TGTCGCCGGAGAGGGCGGGGCCGCCGCCAGTGGAGCCGTGAGTGGTGGCG
AGGATGACGACAAGTCGAGGTATATTAGCGCCACGGAGGGCGCCGACTCG
CATCCTGCATCGGGCGGTGGCACGCCCACCGGCGACGAGGGTCAAATCGG
ACAGGGTAAGGGCGATGAAGTCAAAATTACCACAAAAGTAACACAGCAGG
CCAAACACTTTGGATCCTTCTTGTCATCGGCCATCAGCAAGGCTGGCAGC
AAAATCAAGGAAACTGTCAAGGATAATACCATTCTCGACTCGTTCAACAA
GGAACAGGAAGCTTTCATCAAGGGCCAGGGAGGCGTGGGCAATGGAGCAG
CCCCCTGGATCGGACACGCCAACGAGGCCAAGATCAAGGAGGAAATCCTT
GGCCTGTCGCAGGATCGCCGCAACTTCGTGCGCGCCCCGCCCGCCGGCGT
GGACTTTGAGTTTAGCTACGACACCGCCTATCCTACGGCCATAGCCATTA
TGGCCGAAGACAAGGCGCTCGAGACGATGCGATTCGAGCTGGTGCCCAAG
ATCATCACTGAAGAGAATTTCTGGCGGAATTACTTCTACCGCGTCTCACT
GATCATCCAGGCCGCCGAGTTGGGCACTCTGGGCGCCGATGGCGTGGGTC
AGGCCTCAAGCGGCGAAGATGCCAACGAAGTGGCCACTAAAGAAAAGAAA
TCCAAGACTGCCGAACCAGCCAAGGGCGATTCGAGTGTGAAAGCCATTGC
CGAGCAGCCGAAGGCCGTGATTGAGCCGGAGGCGCAGGAGTGCGATGTCC
AGGCAGCCAAGTCAAAGGCAAAGGCAAAGGCTCAAGCCGGCAAAGAGCTG
GGCCAGAAGATCTCCGAATCGGAATTCGTTTCGGATGACTTCCAGGCCTC
GAGCGAATCGGACTTGGCTGAGATCCAAGACGGCATGCGCAAATTGGGCA
TCGACAGCATGACCCAGCAGGCATTAGCTGCGACTGATGAGGAACAATGG
GAAAAGGATCTGGAAGCTGAACTCAAGGACTACGAGGTGGTTGACGAAGG
CGGCACCGGCGGCGATGGTGGCGGAGGACGCAGAAAGGGCAGGAAGGCCG
GCGAGGACGACACCGAGGCAGATGAGGACGAACCGACAATATCAAACTTG
CGCACACGCTCGACTAACAACGATTGGGAGGAGTACGCCGATTTAATTGA
GGATACCGATGATTTAAAGGCAAGCTTTCTAGACCAT

BO08894.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:31:08
Subject Length Description Subject Range Query Range Score Percent Strand
Sap47-RE 1656 CG8884-PE 1..1653 17..1669 8265 100 Plus
Sap47-RD 1656 CG8884-PD 1..1653 17..1669 8265 100 Plus
Sap47-RC 1656 CG8884-PC 1..1653 17..1669 8265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:31:10
Subject Length Description Subject Range Query Range Score Percent Strand
Sap47-RE 4989 CG8884-RE 760..2414 15..1669 8275 100 Plus
Sap47-RD 5171 CG8884-RD 942..2596 15..1669 8275 100 Plus
Sap47-RC 4843 CG8884-RC 614..2268 15..1669 8275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:31:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15955989..15956307 1121..1439 1595 100 Plus
3R 32079331 3R 15954747..15955021 728..1002 1375 100 Plus
3R 32079331 3R 15951602..15951850 280..528 1245 100 Plus
3R 32079331 3R 15959319..15959549 1439..1669 1155 100 Plus
3R 32079331 3R 15936124..15936340 15..231 1085 100 Plus
3R 32079331 3R 15955087..15955205 1003..1121 595 100 Plus
3R 32079331 3R 15954156..15954259 527..630 505 99 Plus
3R 32079331 3R 15954583..15954683 627..727 505 100 Plus
3R 32079331 3R 15944947..15944996 230..279 250 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:31:07 has no hits.

BO08894.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:52 Download gff for BO08894.complete
Subject Subject Range Query Range Percent Splice Strand
Sap47-RD 1..1656 17..1673 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:54:18 Download gff for BO08894.complete
Subject Subject Range Query Range Percent Splice Strand
Sap47-RD 951..2596 24..1671 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:33 Download gff for BO08894.complete
Subject Subject Range Query Range Percent Splice Strand
Sap47-RC 623..2268 24..1671 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:52 Download gff for BO08894.complete
Subject Subject Range Query Range Percent Splice Strand
Sap47-RD 937..2601 10..1677 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:19:43 Download gff for BO08894.complete
Subject Subject Range Query Range Percent Splice Strand
Sap47-RC 623..2268 24..1671 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:19:43 Download gff for BO08894.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15959320..15959549 1440..1671 99   Plus
3R 15936133..15936340 24..231 100 -> Plus
3R 15944949..15944996 232..279 100 -> Plus
3R 15951602..15951850 280..528 100 -> Plus
3R 15954158..15954255 529..626 100 -> Plus
3R 15954583..15954683 627..727 100 -> Plus
3R 15954747..15955021 728..1002 100 -> Plus
3R 15955087..15955205 1003..1121 100 -> Plus
3R 15955990..15956307 1122..1439 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:33 Download gff for BO08894.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11761855..11762062 24..231 100 -> Plus
arm_3R 11770671..11770718 232..279 100 -> Plus
arm_3R 11777324..11777572 280..528 100 -> Plus
arm_3R 11779880..11779977 529..626 100 -> Plus
arm_3R 11780305..11780405 627..727 100 -> Plus
arm_3R 11780469..11780743 728..1002 100 -> Plus
arm_3R 11780809..11780927 1003..1121 100 -> Plus
arm_3R 11781712..11782029 1122..1439 100 -> Plus
arm_3R 11785042..11785271 1440..1671 99   Plus

BO08894.pep Sequence

Translation from 16 to 1687

> BO08894.pep
MFSGLTNQFTSLVGAVKGGAGDEDVPAPTGDAPAAAPAASTSVEATASSA
VDPEAAAAAGGEGLEGEEAGKRLPKSASLVDSLVSEATGWLGSAKGWLGN
ASIPSMPAMPSMPSMPAMPAMPSIPSIPGLRKGAGADGAEGAEGAVAGEG
GAAASGAVSGGEDDDKSRYISATEGADSHPASGGGTPTGDEGQIGQGKGD
EVKITTKVTQQAKHFGSFLSSAISKAGSKIKETVKDNTILDSFNKEQEAF
IKGQGGVGNGAAPWIGHANEAKIKEEILGLSQDRRNFVRAPPAGVDFEFS
YDTAYPTAIAIMAEDKALETMRFELVPKIITEENFWRNYFYRVSLIIQAA
ELGTLGADGVGQASSGEDANEVATKEKKSKTAEPAKGDSSVKAIAEQPKA
VIEPEAQECDVQAAKSKAKAKAQAGKELGQKISESEFVSDDFQASSESDL
AEIQDGMRKLGIDSMTQQALAATDEEQWEKDLEAELKDYEVVDEGGTGGD
GGGGRRKGRKAGEDDTEADEDEPTISNLRTRSTNNDWEEYADLIEDTDDL
KASFLDH

BO08894.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
Sap47-PE 551 CG8884-PE 1..551 1..551 2799 100 Plus
Sap47-PD 551 CG8884-PD 1..551 1..551 2799 100 Plus
Sap47-PC 551 CG8884-PC 1..551 1..551 2799 100 Plus
Sap47-PA 551 CG8884-PA 1..551 1..551 2799 100 Plus
Sap47-PG 535 CG8884-PG 1..535 1..551 2696 96.9 Plus