Clone Sequence Records
BO08895.3prime Sequence
845 bp (844 high quality bases) assembled on 2006-01-10
> BO08895.3prime
ATGGTCTAGAAAGCTTGTCTGGGCACTATGGTTGTGATGTGGATGCTCTG
CTAGGTAGATGACGTAGACCAAGGGTATGACGACACACAAGGCGAGTATG
AAGATCAGCAGACATATCCAAGACAAGTCGCAGTCCGATCCGGACCAGTC
GATGGCACTCAAAGAGGGTCCAGGGATGGGACGCACTAGCGGAGCGTGCC
TGTCCACCATGTGGTTAAGCAGAGCGGCATTTTCCTCGTAGGGTTGCTCC
ATATTGGCTTCGTCATTCGGCGCACCCTGGGCTCCCTCGTAGAATTGTCC
AGCAGCTCTGCTCGTCGATGGTTTCTCGTGATCCACGGCGCCTGAAGCAT
TTACCGCCGCCACCAGGAGTCGCTCATCCAGCATTTGCCGCGCATCCTCG
AGGGGATTGCGTTCGGGAGCTGGTTCCCGCTCAATATTGTGTCTAGGACT
GTTGTTCCCGCTGCGGTGGACCGCAGGAAGGGCTTCGAGGCCCCCGTTGC
CCAGCAGGACGTTGTGCACTGTAACCGGAATGCGAATAACCCGATGTGCG
TGGATTTCATTTTCGCGGTCGATCTTGTTCAGGCGCTTGATGTCCGCCAC
AGAGGAGTGAAAGCGCAGGGCCAGCGCCTGGAGTGTGTCTCCCTCTTGGA
CCTTTACCTCCAGAGTGTTCTCGTAGCGGCCGAGTCGGGCGTGGCCATTG
GGCCTCCTGGCCAGAGGGAGCAGATCTTCGAACTCGTCGTCATCGTAGGC
GGGACGGGCAAAGATGTCTTCCACGTCGTCGGGGCCGATTTCTTCCTGAT
TGTGTTGTTGTTGGCGCGCATTGCGACGCATGTCGACTGATAACT
BO08895.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17985-PA | 816 | CG17985-RA | 1..813 | 831..19 | 4065 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:15:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17985-RA | 1479 | CG17985-RA | 177..989 | 831..19 | 4065 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:14:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7654478..7655037 | 258..817 | 2800 | 100 | Plus |
| 2R | 25286936 | 2R | 7652115..7652355 | 19..259 | 1205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:14:59 has no hits.
BO08895.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:23 Download gff for
BO08895.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17985-PA | 1..816 | 17..831 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:41 Download gff for
BO08895.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17985-PA | 1..816 | 17..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:41:56 Download gff for
BO08895.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17985-RA | 177..994 | 11..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:32 Download gff for
BO08895.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17985-RA | 177..994 | 11..831 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:32 Download gff for
BO08895.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7652110..7652353 | 11..257 | 98 | <- | Plus |
| 2R | 7654478..7655037 | 258..817 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:41:56 Download gff for
BO08895.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3539615..3539858 | 11..257 | 98 | <- | Plus |
| arm_2R | 3541983..3542542 | 258..817 | 100 | <- | Plus |
BO08895.5prime Sequence
845 bp (798 high quality bases) assembled on 2006-01-09
> BO08895.5prime
GAAGTTATCAGTCGACATGCGTCGCAATGCGCGCCAACAACAACACAATC
AGGAAGAAATCGGCCCCGACGACGTGGAAGACATCTTTGCCCGTCCCGCC
TACGATGACGACGAGTTCGAAGATCTGCTCCCTCTGGCCAGGAGGCCCAA
TGGCCACGCCCGACTCGGCCGCTACGAGAACACTCTGGAGGTAAAGGTCC
AAGAGGGAGACACACTCCAGGCGCTGGCCCTGCGCTTTCACTCCTCTGTG
GCGGACATCAAGCGCCTGAACAAGATCGACCGCGAAAATGAAATCCACGC
ACATCGGGTTATTCGCATTCCGGTTACAGTGCACAACGTCCTGCTGGGCA
ACGGGGGCCTCGAAGCCCTTCCTGCGGTCCACCGCAGCGGGAACAACAGT
CCTAGACACAATATTGAGCGGGAACCAGCTCCCGAACGCAATCCCCTCGA
GGATGCGCGGCAAATGCTGGATGAGCGACTCCTGGTGGCGGCGGTAAATG
CTTCAGGCGCCGTGGATCACGAGAAACCATCGACGAGCAGAGCTGCTGGA
CAATTCTACGAGGGAGCCCAGGGTGCGCCGAATGACGAAGCCAATATGGA
GCAACCCTACGAGGAAAATGCCGCTCTGCTTAACCACATGGTGGACAGGC
ACGCTCCGCTAGTGCGTCCCATCCCTGGACCCTCTTTGAGTGCCATCGAC
TGGTCCGGATCGGACTGCGACTTGTCTTGGATATGTCTGCTGATCTTCAT
ACTCGCCTTGTGTGTCGTCATACCCTTGGTCTACGTCATCTACCTAGCAG
AGCATCCACATCACAACCATAGTGCCCAGACAAGCTTTCTAGACC
BO08895.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17985-PA | 816 | CG17985-RA | 1..813 | 17..829 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:56:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17985-RA | 1479 | CG17985-RA | 177..989 | 17..829 | 4065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:56:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7654478..7655037 | 590..31 | 2800 | 100 | Minus |
| 2R | 25286936 | 2R | 7652115..7652355 | 829..589 | 1205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:56:55 has no hits.
BO08895.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:24 Download gff for
BO08895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17985-PA | 1..816 | 17..831 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:43 Download gff for
BO08895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17985-PA | 1..816 | 17..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:30:02 Download gff for
BO08895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17985-RA | 177..994 | 17..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:02:42 Download gff for
BO08895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17985-RA | 177..994 | 17..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:02:42 Download gff for
BO08895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7652110..7652353 | 591..837 | 98 | <- | Minus |
| 2R | 7654478..7655037 | 31..590 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:30:02 Download gff for
BO08895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3539615..3539858 | 591..837 | 98 | <- | Minus |
| arm_2R | 3541983..3542542 | 31..590 | 100 | <- | Minus |
BO08895.complete Sequence
847 bp assembled on 2011-06-28
> BO08895.complete
GAAGTTATCAGTCGACATGCGTCGCAATGCGCGCCAACAACAACACAATC
AGGAAGAAATCGGCCCCGACGACGTGGAAGACATCTTTGCCCGTCCCGCC
TACGATGACGACGAGTTCGAAGATCTGCTCCCTCTGGCCAGGAGGCCCAA
TGGCCACGCCCGACTCGGCCGCTACGAGAACACTCTGGAGGTAAAGGTCC
AAGAGGGAGACACACTCCAGGCGCTGGCCCTGCGCTTTCACTCCTCTGTG
GCGGACATCAAGCGCCTGAACAAGATCGACCGCGAAAATGAAATCCACGC
ACATCGGGTTATTCGCATTCCGGTTACAGTGCACAACGTCCTGCTGGGCA
ACGGGGGCCTCGAAGCCCTTCCTGCGGTCCACCGCAGCGGGAACAACAGT
CCTAGACACAATATTGAGCGGGAACCAGCTCCCGAACGCAATCCCCTCGA
GGATGCGCGGCAAATGCTGGATGAGCGACTCCTGGTGGCGGCGGTAAATG
CTTCAGGCGCCGTGGATCACGAGAAACCATCGACGAGCAGAGCTGCTGGA
CAATTCTACGAGGGAGCCCAGGGTGCGCCGAATGACGAAGCCAATATGGA
GCAACCCTACGAGGAAAATGCCGCTCTGCTTAACCACATGGTGGACAGGC
ACGCTCCGCTAGTGCGTCCCATCCCTGGACCCTCTTTGAGTGCCATCGAC
TGGTCCGGATCGGACTGCGACTTGTCTTGGATATGTCTGCTGATCTTCAT
ACTCGCCTTGTGTGTCGTCATACCCTTGGTCTACGTCATCTACCTAGCAG
AGCATCCACATCACAACCATAGTGCCCAGACAAGCTTTCTAGACCAT
BO08895.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:14:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17985-RA | 816 | CG17985-PA | 1..813 | 17..829 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:14:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17985-RA | 1479 | CG17985-RA | 177..989 | 17..829 | 4065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:14:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7654478..7655037 | 590..31 | 2800 | 100 | Minus |
| 2R | 25286936 | 2R | 7652115..7652355 | 829..589 | 1205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:14:14 has no hits.
BO08895.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:22 Download gff for
BO08895.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17985-RA | 186..998 | 17..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:55:42 Download gff for
BO08895.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17985-RA | 177..989 | 17..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:14:17 Download gff for
BO08895.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17985-RA | 177..989 | 17..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:14:17 Download gff for
BO08895.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7652112..7652353 | 591..831 | 99 | <- | Minus |
| 2R | 7654478..7655037 | 31..590 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:55:42 Download gff for
BO08895.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3539617..3539858 | 591..831 | 99 | <- | Minus |
| arm_2R | 3541983..3542542 | 31..590 | 100 | <- | Minus |
BO08895.pep Sequence
Translation from 16 to 847
> BO08895.pep
MRRNARQQQHNQEEIGPDDVEDIFARPAYDDDEFEDLLPLARRPNGHARL
GRYENTLEVKVQEGDTLQALALRFHSSVADIKRLNKIDRENEIHAHRVIR
IPVTVHNVLLGNGGLEALPAVHRSGNNSPRHNIEREPAPERNPLEDARQM
LDERLLVAAVNASGAVDHEKPSTSRAAGQFYEGAQGAPNDEANMEQPYEE
NAALLNHMVDRHAPLVRPIPGPSLSAIDWSGSDCDLSWICLLIFILALCV
VIPLVYVIYLAEHPHHNHSAQTSFLDH
BO08895.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:50:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17985-PA | 271 | CG17985-PA | 1..271 | 1..271 | 1426 | 100 | Plus |
